Wall clock time and date at job start Wed Apr 1 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48506 * 109.47003 * 269.99675 * 3 2 1 5 5 H 1.48497 * 109.47387 * 29.99635 * 3 2 1 6 6 H 1.48507 * 109.47218 * 150.00168 * 3 2 1 7 7 C 1.38819 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99600 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00260 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00267 * 180.27564 * 9 7 2 11 11 C 1.52994 * 109.47497 * 179.72061 * 10 9 7 12 12 H 1.09002 * 109.47028 * 304.99719 * 11 10 9 13 13 C 1.54806 * 109.47520 * 184.99769 * 11 10 9 14 14 N 1.45119 * 109.54233 * 172.12333 * 13 11 10 15 15 C 1.34776 * 118.75648 * 269.30657 * 14 13 11 16 16 O 1.21646 * 120.00032 * 356.14201 * 15 14 13 17 17 C 1.47159 * 119.99964 * 176.14603 * 15 14 13 18 18 C 1.38590 * 120.73159 * 51.94899 * 17 15 14 19 19 C 1.38919 * 121.36646 * 179.97438 * 18 17 15 20 20 C 1.35822 * 122.59785 * 0.02562 * 19 18 17 21 21 C 1.40839 * 120.55670 * 0.02562 * 20 19 18 22 22 C 1.38429 * 134.89396 * 180.02562 * 21 20 19 23 23 N 1.33893 * 107.83743 * 179.97438 * 22 21 20 24 24 H 0.97005 * 125.01774 * 180.02562 * 23 22 21 25 25 N 1.39977 * 109.96708 * 0.02562 * 23 22 21 26 26 C 1.31481 * 109.01426 * 359.69528 * 25 23 22 27 27 C 1.47507 * 122.48537 * 89.28253 * 14 13 11 28 28 C 1.53570 * 111.03218 * 318.36965 * 27 14 13 29 29 C 1.51536 * 109.57814 * 320.02352 * 28 27 14 30 30 O 1.38023 * 109.47188 * 64.98928 * 11 10 9 31 31 H 0.96998 * 119.99343 * 0.02562 * 1 2 3 32 32 H 0.97009 * 119.99794 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.46787 * 299.72302 * 10 9 7 34 34 H 1.09003 * 109.46997 * 59.71999 * 10 9 7 35 35 H 1.09004 * 109.45722 * 292.14492 * 13 11 10 36 36 H 1.09004 * 109.45665 * 52.09900 * 13 11 10 37 37 H 1.08010 * 119.31174 * 0.02562 * 18 17 15 38 38 H 1.08004 * 118.69688 * 180.02562 * 19 18 17 39 39 H 1.08008 * 119.72243 * 179.97438 * 20 19 18 40 40 H 1.07999 * 126.08164 * 0.02562 * 22 21 20 41 41 H 1.09002 * 109.16717 * 78.77132 * 27 14 13 42 42 H 1.09000 * 109.16663 * 197.96523 * 27 14 13 43 43 H 1.09004 * 109.45254 * 80.05363 * 28 27 14 44 44 H 1.08996 * 109.45263 * 199.99001 * 28 27 14 45 45 H 1.09000 * 109.59097 * 211.18292 * 29 28 27 46 46 H 1.09004 * 109.59024 * 331.61880 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4709 -0.0067 11 6 5.6163 -2.1914 -0.0116 12 1 5.8626 -1.5430 -0.8524 13 6 6.3888 -3.5262 -0.1458 14 7 7.8010 -3.2526 -0.3376 15 6 8.2713 -3.1213 -1.5938 16 8 7.5312 -3.3016 -2.5422 17 6 9.6801 -2.7600 -1.8181 18 6 10.6999 -3.4736 -1.2086 19 6 12.0342 -3.1443 -1.4115 20 6 12.4208 -2.1152 -2.2092 21 6 11.4627 -1.3260 -2.8745 22 6 11.5160 -0.2404 -3.7317 23 7 10.2589 0.0933 -4.0498 24 1 10.0085 0.8226 -4.6384 25 7 9.3594 -0.7656 -3.4076 26 6 10.0358 -1.6393 -2.6949 27 6 8.7411 -3.1122 0.7904 28 6 8.1142 -2.2991 1.9324 29 6 7.3164 -1.1466 1.3568 30 8 5.9727 -1.5701 1.1682 31 1 -0.4849 0.8401 -0.0004 32 1 3.8647 -0.3621 0.0004 33 1 3.8521 -3.0452 0.8825 34 1 3.8454 -3.0398 -0.8974 35 1 6.2532 -4.1169 0.7602 36 1 6.0070 -4.0822 -1.0021 37 1 10.4521 -4.3034 -0.5631 38 1 12.7941 -3.7298 -0.9152 39 1 13.4718 -1.8998 -2.3337 40 1 12.4122 0.2498 -4.0824 41 1 9.0070 -4.1025 1.1601 42 1 9.6426 -2.6067 0.4441 43 1 7.4546 -2.9416 2.5158 44 1 8.9029 -1.9091 2.5758 45 1 7.3405 -0.3041 2.0480 46 1 7.7435 -0.8487 0.3992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201112559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:53 Heat of formation + Delta-G solvation = 54.098411 kcal Electronic energy + Delta-G solvation = -30621.851412 eV Core-core repulsion = 26514.547561 eV Total energy + Delta-G solvation = -4107.303851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65162 -40.51546 -38.53099 -37.19075 -35.62003 -34.67588 -32.89539 -32.42806 -31.28374 -31.07385 -29.65620 -28.68710 -26.70604 -25.65353 -24.61589 -22.81139 -22.26122 -21.66036 -21.26201 -20.96387 -19.19711 -18.48938 -17.81855 -17.55600 -16.90506 -16.48533 -16.39522 -15.89805 -15.67481 -15.19072 -15.00398 -14.68579 -14.30753 -14.25924 -13.79633 -13.66218 -13.44980 -13.35786 -12.83697 -12.57142 -12.55921 -12.46236 -12.20717 -12.16047 -11.86344 -11.73490 -11.35197 -11.09925 -10.89828 -10.81921 -10.77208 -10.64814 -10.28052 -10.01065 -9.77782 -9.47749 -9.42316 -9.20448 -8.78623 -8.55119 -8.00596 -7.09180 -5.65188 -2.98832 0.02586 1.41062 1.90858 2.26660 2.62392 2.90007 3.43477 3.48696 3.53851 3.55011 3.82754 3.92156 4.05190 4.38699 4.55298 4.63198 4.71988 4.74191 4.79669 4.89628 4.94754 4.97416 5.16354 5.19271 5.30474 5.35609 5.45912 5.51536 5.54755 5.62553 5.65575 5.81529 5.87748 5.91459 5.96279 5.97255 6.07704 6.10310 6.11679 6.38289 6.53291 6.65535 6.66214 6.77446 7.19178 7.24816 7.95302 8.11081 8.13315 8.54160 9.34100 10.06921 10.28156 11.53478 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.003169 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.849658 B = 8832.852699 C = 9795.284669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.003 3.997 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.084 3.916 12 H 0.051 0.949 13 C 0.082 3.918 14 N -0.605 5.605 15 C 0.557 3.443 16 O -0.517 6.517 17 C -0.108 4.108 18 C -0.039 4.039 19 C -0.168 4.168 20 C -0.016 4.016 21 C -0.218 4.218 22 C 0.092 3.908 23 N -0.425 5.425 24 H 0.447 0.553 25 N -0.280 5.280 26 C 0.132 3.868 27 C 0.098 3.902 28 C -0.166 4.166 29 C 0.072 3.928 30 O -0.372 6.372 31 H 0.258 0.742 32 H 0.363 0.637 33 H 0.036 0.964 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.192 0.808 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.804 -4.495 -1.906 35.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.192 4.192 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.043 3.957 11 C 0.024 3.976 12 H 0.069 0.931 13 C -0.041 4.041 14 N -0.338 5.338 15 C 0.345 3.655 16 O -0.392 6.392 17 C -0.115 4.115 18 C -0.062 4.062 19 C -0.188 4.188 20 C -0.036 4.036 21 C -0.228 4.228 22 C -0.065 4.065 23 N -0.124 5.124 24 H 0.291 0.709 25 N -0.106 5.106 26 C -0.026 4.026 27 C -0.024 4.024 28 C -0.204 4.204 29 C -0.005 4.005 30 O -0.290 6.290 31 H 0.068 0.932 32 H 0.196 0.804 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.209 0.791 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 32.793 -4.260 -2.633 33.173 hybrid contribution 1.596 1.378 -0.301 2.130 sum 34.389 -2.881 -2.934 34.634 Atomic orbital electron populations 1.69707 1.05049 1.25664 1.58141 1.24630 0.95214 0.97129 1.02264 0.86552 0.79474 0.85002 0.77728 1.21237 1.21800 1.20038 1.19075 0.80574 0.94774 1.42346 0.89145 1.42580 1.03906 1.02128 1.90962 1.20588 0.85622 0.90072 0.99389 1.22344 0.96129 0.92116 0.87053 0.93103 1.22404 0.79166 0.98813 1.03708 1.47831 1.09225 1.71119 1.05602 1.18147 0.87001 0.77292 0.83084 1.90857 1.58374 1.48809 1.41141 1.19723 0.93304 0.97354 1.01106 1.21220 0.92049 0.97309 0.95576 1.20310 0.95570 1.00038 1.02835 1.20272 0.97900 0.92559 0.92886 1.19570 0.93955 1.01730 1.07551 1.22807 0.89810 0.96708 0.97223 1.46512 1.04094 1.26127 1.35690 0.70857 1.77803 1.12037 1.05830 1.14898 1.21495 0.91287 0.94334 0.95481 1.22247 0.92637 1.00540 0.87008 1.22495 1.00938 0.99014 0.97951 1.22116 0.82782 0.95626 0.99927 1.86408 1.26993 1.77016 1.38565 0.93198 0.80372 0.94592 0.93825 0.89536 0.88486 0.84760 0.85335 0.85525 0.79135 0.91266 0.89269 0.89837 0.89717 0.89462 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.85 13.97 55.49 0.78 -30.08 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 23.74 27.74 -169.99 -4.71 19.02 16 4 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 5 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.27 -7.11 6.52 56.52 0.37 -6.74 16 7 C -0.24 -7.22 10.47 -15.06 -0.16 -7.38 16 8 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 9 N -0.75 -19.83 5.34 -59.91 -0.32 -20.15 16 10 C 0.17 3.70 5.92 -4.05 -0.02 3.67 16 11 C 0.08 1.54 2.68 -25.78 -0.07 1.47 16 12 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 13 C 0.08 1.24 4.89 -3.83 -0.02 1.22 16 14 N -0.60 -8.04 2.19 -173.83 -0.38 -8.42 16 15 C 0.56 8.64 7.20 -12.64 -0.09 8.55 16 16 O -0.52 -10.27 16.49 5.24 0.09 -10.18 16 17 C -0.11 -1.38 4.95 -102.74 -0.51 -1.88 16 18 C -0.04 -0.34 7.43 -39.20 -0.29 -0.63 16 19 C -0.17 -1.10 9.83 -40.19 -0.39 -1.49 16 20 C -0.02 -0.10 10.02 -39.46 -0.40 -0.50 16 21 C -0.22 -1.97 6.34 -105.21 -0.67 -2.64 16 22 C 0.09 0.57 12.08 -16.58 -0.20 0.37 16 23 N -0.42 -3.59 7.18 30.86 0.22 -3.37 16 24 H 0.45 2.18 8.96 -182.69 -1.64 0.55 16 25 N -0.28 -4.01 12.67 34.35 0.44 -3.57 16 26 C 0.13 1.75 7.48 -80.98 -0.61 1.14 16 27 C 0.10 0.91 4.86 -3.20 -0.02 0.90 16 28 C -0.17 -1.63 5.79 -27.18 -0.16 -1.79 16 29 C 0.07 0.99 6.37 36.42 0.23 1.22 16 30 O -0.37 -6.68 9.38 -26.56 -0.25 -6.93 16 31 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 32 H 0.36 9.62 5.52 -40.82 -0.23 9.39 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 36 H 0.10 1.55 7.22 -51.93 -0.37 1.18 16 37 H 0.13 0.87 7.03 -52.48 -0.37 0.50 16 38 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 39 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 40 H 0.19 0.20 8.06 -52.49 -0.42 -0.23 16 41 H 0.07 0.49 7.99 -51.93 -0.42 0.07 16 42 H 0.09 0.75 5.05 -51.93 -0.26 0.49 16 43 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -41.73 374.05 -9.45 -51.18 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.48 Total: 4.62 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -3.46 Total: 2.24 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: 0.73 Total: -65.58 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.16 Total: -17.12 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.71 Total: 19.02 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -41.73 -9.45 -51.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201112559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.275 kcal (2) G-P(sol) polarization free energy of solvation -41.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds