Wall clock time and date at job start Wed Apr 1 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00214 * 2 1 4 4 H 1.48495 * 109.46747 * 269.99885 * 3 2 1 5 5 H 1.48496 * 109.46903 * 29.99419 * 3 2 1 6 6 H 1.48501 * 109.47024 * 149.99702 * 3 2 1 7 7 C 1.38818 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00150 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99351 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99490 * 180.27239 * 9 7 2 11 11 C 1.53003 * 109.47244 * 179.72098 * 10 9 7 12 12 H 1.08996 * 109.46575 * 60.00420 * 11 10 9 13 13 C 1.54803 * 109.47019 * 180.02562 * 11 10 9 14 14 N 1.45129 * 109.53825 * 187.88043 * 13 11 10 15 15 C 1.34775 * 118.75896 * 90.71519 * 14 13 11 16 16 O 1.21595 * 119.99855 * 354.42055 * 15 14 13 17 17 C 1.47523 * 120.00127 * 174.41645 * 15 14 13 18 18 C 1.39435 * 120.24728 * 313.93695 * 17 15 14 19 19 C 1.38289 * 120.28379 * 180.02562 * 18 17 15 20 20 C 1.37881 * 120.72321 * 359.97021 * 19 18 17 21 21 C 1.39676 * 120.10837 * 359.97438 * 20 19 18 22 22 N 1.35851 * 133.51093 * 180.02562 * 21 20 19 23 23 C 1.30102 * 109.53898 * 179.30946 * 22 21 20 24 24 N 1.36129 * 110.03905 * 0.62740 * 23 22 21 25 25 H 0.96995 * 126.30339 * 179.43750 * 24 23 22 26 26 C 1.37509 * 107.38468 * 359.47053 * 24 23 22 27 27 C 1.47509 * 122.48106 * 270.73897 * 14 13 11 28 28 C 1.53573 * 111.03191 * 41.60917 * 27 14 13 29 29 C 1.51530 * 109.57959 * 39.97598 * 28 27 14 30 30 O 1.38020 * 109.46883 * 300.01269 * 11 10 9 31 31 H 0.97009 * 120.00230 * 0.02562 * 1 2 3 32 32 H 0.96992 * 120.00786 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47347 * 299.72562 * 10 9 7 34 34 H 1.09003 * 109.47140 * 59.72392 * 10 9 7 35 35 H 1.09001 * 109.46192 * 307.89810 * 13 11 10 36 36 H 1.09001 * 109.46222 * 67.86170 * 13 11 10 37 37 H 1.08004 * 119.85907 * 359.97438 * 18 17 15 38 38 H 1.07998 * 119.63628 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.94393 * 180.02562 * 20 19 18 40 40 H 1.07991 * 124.97746 * 180.09844 * 23 22 21 41 41 H 1.09002 * 109.16199 * 162.00445 * 27 14 13 42 42 H 1.08999 * 109.16726 * 281.20770 * 27 14 13 43 43 H 1.09004 * 109.44775 * 160.00696 * 28 27 14 44 44 H 1.08993 * 109.45189 * 279.93861 * 28 27 14 45 45 H 1.09005 * 109.59642 * 28.37662 * 29 28 27 46 46 H 1.09003 * 109.59504 * 148.81519 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0071 11 6 1.0637 -4.8197 0.0127 12 1 0.4374 -4.7664 -0.8778 13 6 1.8378 -6.1603 0.0203 14 7 0.9073 -7.2590 -0.1619 15 6 0.6437 -7.6848 -1.4132 16 8 1.1014 -7.0868 -2.3679 17 6 -0.1999 -8.8764 -1.6246 18 6 0.0169 -10.0323 -0.8756 19 6 -0.7731 -11.1500 -1.0735 20 6 -1.7848 -11.1405 -2.0102 21 6 -2.0232 -9.9947 -2.7726 22 7 -2.9213 -9.6881 -3.7447 23 6 -2.7375 -8.4609 -4.1356 24 7 -1.7014 -7.9035 -3.4509 25 1 -1.3589 -7.0027 -3.5608 26 6 -1.2294 -8.8529 -2.5753 27 6 0.2387 -7.9271 0.9706 28 6 -0.2258 -6.9041 2.0176 29 6 -0.7814 -5.6794 1.3194 30 8 0.2697 -4.7407 1.1389 31 1 -0.4851 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6849 -3.7190 -0.8823 34 1 2.6843 -3.7100 0.8976 35 1 2.5666 -6.1635 -0.7902 36 1 2.3542 -6.2761 0.9733 37 1 0.8058 -10.0553 -0.1383 38 1 -0.5957 -12.0399 -0.4879 39 1 -2.3945 -12.0203 -2.1541 40 1 -3.3161 -7.9608 -4.8980 41 1 -0.6258 -8.4786 0.6010 42 1 0.9349 -8.6247 1.4362 43 1 -1.0011 -7.3495 2.6412 44 1 0.6194 -6.6141 2.6417 45 1 -1.1876 -5.9647 0.3489 46 1 -1.5671 -5.2352 1.9305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201701723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:42 Heat of formation + Delta-G solvation = -3.459079 kcal Electronic energy + Delta-G solvation = -30592.817561 eV Core-core repulsion = 26483.017830 eV Total energy + Delta-G solvation = -4109.799731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.24697 -41.70304 -39.80559 -38.12389 -36.92802 -36.28422 -34.45792 -34.12607 -32.69927 -31.64907 -30.51001 -30.03863 -27.85583 -26.85903 -25.33292 -24.20528 -23.39738 -23.13602 -22.47601 -22.31272 -20.61568 -19.28721 -19.01600 -18.71839 -17.80796 -17.74933 -17.48785 -16.97311 -16.66748 -16.47839 -16.19171 -15.96707 -15.67747 -15.19515 -15.16568 -14.97196 -14.76158 -14.60907 -14.52774 -13.97550 -13.69913 -13.45321 -13.19690 -13.05907 -12.88238 -12.81377 -12.78747 -12.62170 -12.34642 -12.16577 -12.04047 -11.86107 -11.80192 -11.51684 -11.47855 -11.00000 -10.87962 -10.61349 -9.77041 -9.48584 -9.23233 -9.03578 -7.96110 -5.25995 -0.39372 0.43129 1.33810 1.45284 1.48276 1.56756 1.69938 1.93969 1.95663 2.54493 2.66668 2.76323 3.18159 3.36334 3.37422 3.58301 3.75839 3.82059 3.92645 3.97892 4.03789 4.08315 4.23978 4.25414 4.31293 4.34817 4.37964 4.39299 4.49614 4.63603 4.69984 4.74220 4.80558 4.84447 4.92777 5.05199 5.08562 5.14302 5.22119 5.35228 5.41261 5.44493 5.45897 5.78302 6.11242 6.24241 6.27237 6.69367 6.75217 6.91385 7.30692 8.04685 8.29975 9.27776 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.002736 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.886339 B =10232.580499 C =11031.319724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.163 3.837 11 C 0.105 3.895 12 H 0.017 0.983 13 C 0.094 3.906 14 N -0.596 5.596 15 C 0.549 3.451 16 O -0.579 6.579 17 C -0.144 4.144 18 C -0.054 4.054 19 C -0.122 4.122 20 C -0.046 4.046 21 C 0.015 3.985 22 N -0.525 5.525 23 C 0.271 3.729 24 N -0.600 5.600 25 H 0.429 0.571 26 C 0.064 3.936 27 C 0.097 3.903 28 C -0.157 4.157 29 C 0.066 3.934 30 O -0.394 6.394 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.164 0.836 38 H 0.179 0.821 39 H 0.152 0.848 40 H 0.257 0.743 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.032 0.968 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -28.353 1.366 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.382 5.382 10 C 0.036 3.964 11 C 0.045 3.955 12 H 0.035 0.965 13 C -0.030 4.030 14 N -0.326 5.326 15 C 0.339 3.661 16 O -0.460 6.460 17 C -0.151 4.151 18 C -0.073 4.073 19 C -0.141 4.141 20 C -0.065 4.065 21 C -0.103 4.103 22 N -0.245 5.245 23 C -0.016 4.016 24 N -0.210 5.210 25 H 0.269 0.731 26 C -0.049 4.049 27 C -0.024 4.024 28 C -0.194 4.194 29 C -0.010 4.010 30 O -0.313 6.313 31 H 0.060 0.940 32 H 0.205 0.795 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.181 0.819 38 H 0.196 0.804 39 H 0.170 0.830 40 H 0.273 0.727 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.100 0.900 45 H 0.050 0.950 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.876 -28.445 0.754 28.718 hybrid contribution 0.527 2.392 -0.504 2.500 sum -3.349 -26.054 0.251 26.269 Atomic orbital electron populations 1.69852 1.06794 1.26072 1.59431 1.25647 0.96463 1.01322 1.03553 0.85064 0.77724 0.79035 0.77467 1.21361 1.22003 1.19152 1.19684 0.91589 0.85224 1.41422 0.90372 1.42412 1.05609 1.00921 1.89306 1.20763 0.93074 0.84032 0.98547 1.21881 0.91775 0.94726 0.87103 0.96525 1.22192 0.91904 0.84618 1.04276 1.47928 1.44183 1.33869 1.06669 1.18865 0.80103 0.84112 0.82991 1.90797 1.53992 1.59058 1.42143 1.18770 0.98535 0.96434 1.01324 1.21549 0.98951 0.90347 0.96479 1.21262 0.94634 0.99439 0.98812 1.20868 0.97373 0.95440 0.92834 1.19513 0.96187 0.95124 0.99463 1.70532 1.25628 1.14031 1.14308 1.26287 0.88781 0.89625 0.96886 1.43386 1.29549 1.15508 1.32532 0.73139 1.18927 0.98691 0.91665 0.95591 1.22547 0.98728 0.95114 0.85973 1.22450 1.03526 0.95037 0.98431 1.22345 0.89198 0.90194 0.99224 1.86357 1.45596 1.56533 1.42832 0.94013 0.79523 0.94740 0.94727 0.89914 0.87172 0.81886 0.80397 0.83024 0.72693 0.88285 0.87446 0.86266 0.89959 0.94957 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.96 13.06 21.65 0.28 -61.68 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 3 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.74 -40.81 5.49 -343.43 -1.88 -42.70 16 10 C 0.16 7.08 5.95 86.38 0.51 7.60 16 11 C 0.11 3.85 2.73 31.21 0.09 3.94 16 12 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 13 C 0.09 2.59 4.82 87.25 0.42 3.01 16 14 N -0.60 -13.65 2.19 -821.71 -1.80 -15.45 16 15 C 0.55 14.91 7.18 86.69 0.62 15.54 16 16 O -0.58 -20.74 16.49 -4.01 -0.07 -20.80 16 17 C -0.14 -3.16 4.74 -20.08 -0.10 -3.25 16 18 C -0.05 -0.71 7.61 22.57 0.17 -0.54 16 19 C -0.12 -1.24 9.99 22.20 0.22 -1.02 16 20 C -0.05 -0.70 10.09 22.53 0.23 -0.48 16 21 C 0.01 0.33 7.22 39.41 0.28 0.62 16 22 N -0.52 -12.15 11.28 -192.02 -2.17 -14.31 16 23 C 0.27 4.98 12.97 180.03 2.34 7.32 16 24 N -0.60 -13.35 6.21 -190.50 -1.18 -14.53 16 25 H 0.43 9.59 8.96 -92.71 -0.83 8.75 16 26 C 0.06 1.55 6.95 39.26 0.27 1.82 16 27 C 0.10 1.37 4.71 86.38 0.41 1.78 16 28 C -0.16 -2.54 5.78 30.31 0.18 -2.37 16 29 C 0.07 1.74 6.37 71.50 0.46 2.20 16 30 O -0.39 -14.24 9.18 -117.93 -1.08 -15.32 16 31 H 0.25 15.41 8.31 -92.70 -0.77 14.64 16 32 H 0.37 22.25 7.53 -92.71 -0.70 21.55 16 33 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 2.47 7.36 -2.39 -0.02 2.45 16 36 H 0.11 2.51 8.11 -2.39 -0.02 2.49 16 37 H 0.16 1.24 6.78 -2.91 -0.02 1.22 16 38 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.26 2.11 8.06 -2.92 -0.02 2.08 16 41 H 0.10 1.25 5.50 -2.39 -0.01 1.24 16 42 H 0.11 0.82 7.67 -2.39 -0.02 0.81 16 43 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.43 8.01 -2.39 -0.02 1.41 16 45 H 0.03 0.90 7.40 -2.38 -0.02 0.89 16 46 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -84.95 375.74 1.04 -83.91 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.49 Total: 33.05 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 7.40 Total: 18.25 kcal Atomic # 7 Polarization: -141.92 SS G_CDS: -6.75 Total: -148.67 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.15 Total: -36.13 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -84.95 1.04 -83.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201701723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.452 kcal (2) G-P(sol) polarization free energy of solvation -84.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds