Wall clock time and date at job start Wed Apr 1 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00388 * 2 1 4 4 H 1.48502 * 109.47130 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47262 * 119.99830 * 3 2 1 6 6 H 1.48496 * 109.47166 * 239.99635 * 3 2 1 7 7 C 1.38819 * 119.99474 * 180.27164 * 2 1 3 8 8 H 1.07993 * 119.99804 * 179.73333 * 7 2 1 9 9 N 1.36935 * 120.00015 * 359.72743 * 7 2 1 10 10 C 1.46502 * 119.99983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47408 * 304.99222 * 11 10 9 13 13 C 1.54809 * 109.46460 * 185.00073 * 11 10 9 14 14 N 1.45126 * 109.53909 * 172.12175 * 13 11 10 15 15 C 1.34769 * 118.75714 * 269.26333 * 14 13 11 16 16 O 1.21675 * 120.00173 * 173.70337 * 15 14 13 17 17 C 1.46930 * 120.00364 * 353.69567 * 15 14 13 18 18 C 1.36356 * 126.82323 * 39.27196 * 17 15 14 19 19 N 1.35575 * 109.75081 * 179.83289 * 18 17 15 20 20 H 0.96995 * 124.72306 * 180.18283 * 19 18 17 21 21 C 1.37700 * 110.55885 * 0.44807 * 19 18 17 22 22 N 1.32672 * 132.95279 * 179.70720 * 21 19 18 23 23 C 1.31604 * 121.69166 * 180.02562 * 22 21 19 24 24 C 1.38582 * 121.54255 * 0.02562 * 23 22 21 25 25 C 1.38332 * 119.32659 * 359.95468 * 24 23 22 26 26 C 1.39349 * 118.05691 * 0.04894 * 25 24 23 27 27 C 1.47511 * 122.48549 * 89.27606 * 14 13 11 28 28 C 1.53573 * 111.03158 * 318.37511 * 27 14 13 29 29 C 1.51537 * 109.57762 * 320.01778 * 28 27 14 30 30 O 1.38015 * 109.47334 * 64.99480 * 11 10 9 31 31 H 0.96994 * 120.00758 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99845 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.46859 * 299.99974 * 10 9 7 34 34 H 1.08997 * 109.46957 * 60.00021 * 10 9 7 35 35 H 1.08998 * 109.46136 * 292.13501 * 13 11 10 36 36 H 1.08993 * 109.46259 * 52.10075 * 13 11 10 37 37 H 1.08005 * 125.12297 * 359.97438 * 18 17 15 38 38 H 1.08007 * 119.22403 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.33500 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.97335 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.16334 * 78.77553 * 27 14 13 42 42 H 1.09002 * 109.16776 * 197.97674 * 27 14 13 43 43 H 1.08994 * 109.45350 * 80.05534 * 28 27 14 44 44 H 1.09003 * 109.45151 * 200.00917 * 28 27 14 45 45 H 1.08997 * 109.58683 * 211.18490 * 29 28 27 46 46 H 1.09000 * 109.59133 * 331.47612 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6962 -1.2124 7 6 2.0102 -1.2023 -0.0057 8 1 3.0901 -1.2023 -0.0101 9 7 1.3254 -2.3881 -0.0057 10 6 2.0579 -3.6569 -0.0111 11 6 1.0635 -4.8197 -0.0105 12 1 0.3822 -4.7148 0.8339 13 6 1.8337 -6.1570 0.1109 14 7 0.8913 -7.2446 0.2988 15 6 0.5483 -7.5957 1.5539 16 8 -0.3236 -8.4244 1.7371 17 6 1.2273 -6.9780 2.7012 18 6 1.6041 -5.6732 2.8223 19 7 2.2000 -5.4781 4.0244 20 1 2.5488 -4.6286 4.3367 21 6 2.2464 -6.6549 4.7378 22 7 2.7248 -6.9681 5.9350 23 6 2.6502 -8.1929 6.4106 24 6 2.0677 -9.2188 5.6834 25 6 1.5511 -8.9511 4.4284 26 6 1.6422 -7.6467 3.9467 27 6 0.2949 -7.9804 -0.8320 28 6 -0.1002 -7.0227 -1.9657 29 6 -0.6971 -5.7596 -1.3785 30 8 0.3425 -4.8091 -1.1874 31 1 -0.4851 -0.8399 -0.0004 32 1 0.3555 -2.3880 -0.0013 33 1 2.6811 -3.7127 -0.9035 34 1 2.6878 -3.7166 0.8764 35 1 2.4093 -6.3285 -0.7986 36 1 2.5095 -6.1106 0.9648 37 1 1.4490 -4.9096 2.0744 38 1 3.0524 -8.4035 7.3906 39 1 2.0173 -10.2170 6.0925 40 1 1.0917 -9.7305 3.8386 41 1 1.0181 -8.7031 -1.2099 42 1 -0.5923 -8.5106 -0.4860 43 1 0.7835 -6.7686 -2.5509 44 1 -0.8353 -7.5059 -2.6094 45 1 -1.4414 -5.3543 -2.0638 46 1 -1.1670 -5.9879 -0.4218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202098006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:40 Heat of formation + Delta-G solvation = 29.808418 kcal Electronic energy + Delta-G solvation = -30906.494221 eV Core-core repulsion = 26798.137077 eV Total energy + Delta-G solvation = -4108.357144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.03630 -40.45458 -38.53841 -38.04850 -35.47888 -35.12707 -33.59737 -32.98876 -31.18513 -30.38457 -29.58248 -28.80980 -26.70106 -25.12238 -23.98557 -23.41806 -22.72800 -22.70347 -21.39101 -20.87808 -19.23809 -18.41999 -17.68395 -17.37421 -16.79964 -16.56534 -16.31924 -16.12865 -15.77801 -15.37676 -15.05281 -14.85606 -14.47578 -14.14469 -14.02390 -13.74438 -13.39280 -13.35573 -13.20696 -12.98249 -12.78365 -12.61819 -12.52092 -12.19952 -12.18149 -11.86242 -11.43098 -10.99940 -10.76872 -10.66432 -10.61996 -10.49806 -10.08971 -10.02704 -9.60378 -9.54643 -9.27192 -8.96832 -8.77788 -8.65405 -8.31247 -7.08113 -6.14888 -3.15913 0.69216 1.10095 1.84943 2.48006 2.75353 3.03310 3.48403 3.51832 3.69351 3.69569 3.72721 4.22084 4.30667 4.48169 4.54849 4.66219 4.70453 4.75047 4.87388 4.89626 4.92704 4.98841 5.12631 5.17235 5.24118 5.27002 5.37428 5.47268 5.56484 5.59730 5.60374 5.63020 5.72076 5.88684 5.92003 5.97953 6.01662 6.11522 6.13374 6.25781 6.37448 6.50891 6.62668 6.96691 7.19669 7.72495 7.76174 7.76576 8.06902 8.71359 9.16134 10.02890 10.17099 11.33352 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.003677 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.927686 B = 7612.059845 C = 9986.995045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.042 4.042 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.165 3.835 11 C 0.075 3.925 12 H 0.051 0.949 13 C 0.062 3.938 14 N -0.605 5.605 15 C 0.590 3.410 16 O -0.540 6.540 17 C -0.226 4.226 18 C 0.115 3.885 19 N -0.561 5.561 20 H 0.429 0.571 21 C 0.279 3.721 22 N -0.493 5.493 23 C 0.134 3.866 24 C -0.197 4.197 25 C -0.024 4.024 26 C -0.108 4.108 27 C 0.112 3.888 28 C -0.165 4.165 29 C 0.071 3.929 30 O -0.364 6.364 31 H 0.256 0.744 32 H 0.371 0.629 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.199 0.801 38 H 0.162 0.838 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -20.014 5.010 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.382 5.382 10 C 0.037 3.963 11 C 0.014 3.986 12 H 0.068 0.932 13 C -0.063 4.063 14 N -0.337 5.337 15 C 0.380 3.620 16 O -0.418 6.418 17 C -0.237 4.237 18 C -0.018 4.018 19 N -0.165 5.165 20 H 0.268 0.732 21 C 0.047 3.953 22 N -0.205 5.205 23 C -0.032 4.032 24 C -0.218 4.218 25 C -0.050 4.050 26 C -0.115 4.115 27 C -0.010 4.010 28 C -0.203 4.203 29 C -0.005 4.005 30 O -0.282 6.282 31 H 0.067 0.933 32 H 0.204 0.796 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.215 0.785 38 H 0.179 0.821 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.269 -17.855 5.435 19.146 hybrid contribution -0.290 -2.104 -0.240 2.137 sum 3.978 -19.959 5.195 21.004 Atomic orbital electron populations 1.70871 1.06065 1.28573 1.53007 1.25778 0.97029 1.00981 1.00191 0.83251 0.74237 0.75620 0.75864 1.21012 1.22257 1.22211 1.19992 0.91976 0.85660 1.49114 0.91699 1.42236 1.05036 1.00351 1.90623 1.20627 0.92303 0.84307 0.99048 1.22565 0.93731 0.94366 0.87889 0.93193 1.22808 0.92425 0.86564 1.04459 1.47733 1.45179 1.35103 1.05727 1.17355 0.81448 0.81292 0.81922 1.90760 1.30937 1.34692 1.85392 1.19808 1.13482 0.93829 0.96616 1.23108 0.93265 0.97894 0.87500 1.41451 1.50808 1.10049 1.14198 0.73187 1.18369 0.99445 0.86297 0.91191 1.66493 1.20226 1.22411 1.11404 1.22463 0.95350 0.86186 0.99168 1.21922 1.02955 1.01119 0.95807 1.20998 0.94570 0.94655 0.94808 1.19369 1.03328 0.94437 0.94406 1.21835 0.99392 0.93856 0.85911 1.22491 1.02806 0.96980 0.98057 1.22189 0.89585 0.88449 1.00318 1.86445 1.48076 1.55792 1.37906 0.93259 0.79570 0.94702 0.95048 0.88986 0.88798 0.78484 0.82057 0.84319 0.84451 0.91585 0.88878 0.90059 0.89572 0.89036 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.61 13.70 55.49 0.76 -27.85 16 2 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 3 Si 1.08 25.30 29.92 -169.99 -5.09 20.21 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.34 -9.15 9.99 -15.06 -0.15 -9.30 16 8 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.74 -17.68 5.54 -59.91 -0.33 -18.02 16 10 C 0.17 3.02 5.62 -4.04 -0.02 2.99 16 11 C 0.07 1.13 1.63 -25.78 -0.04 1.09 16 12 H 0.05 0.79 6.49 -51.93 -0.34 0.46 16 13 C 0.06 0.75 4.40 -3.83 -0.02 0.74 16 14 N -0.61 -7.62 2.19 -173.91 -0.38 -8.00 16 15 C 0.59 8.68 7.55 -12.74 -0.10 8.58 16 16 O -0.54 -9.25 16.40 5.21 0.09 -9.16 16 17 C -0.23 -3.17 5.47 -103.36 -0.57 -3.74 16 18 C 0.11 1.47 9.23 -16.58 -0.15 1.31 16 19 N -0.56 -6.80 5.97 -11.97 -0.07 -6.87 16 20 H 0.43 4.31 8.96 -40.82 -0.37 3.95 16 21 C 0.28 3.77 8.41 -155.52 -1.31 2.46 16 22 N -0.49 -6.33 10.39 -12.29 -0.13 -6.46 16 23 C 0.13 1.33 11.14 -17.52 -0.20 1.14 16 24 C -0.20 -1.84 10.10 -39.42 -0.40 -2.24 16 25 C -0.02 -0.28 10.21 -39.13 -0.40 -0.68 16 26 C -0.11 -1.50 6.38 -104.93 -0.67 -2.17 16 27 C 0.11 1.21 6.19 -3.19 -0.02 1.19 16 28 C -0.17 -1.68 5.79 -27.17 -0.16 -1.84 16 29 C 0.07 0.92 6.37 36.42 0.23 1.15 16 30 O -0.36 -5.91 9.38 -26.53 -0.25 -6.16 16 31 H 0.26 7.71 6.77 -40.82 -0.28 7.43 16 32 H 0.37 9.37 6.49 -40.82 -0.26 9.10 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.53 7.50 -51.93 -0.39 0.14 16 35 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.09 1.07 5.17 -51.93 -0.27 0.80 16 37 H 0.20 2.53 3.01 -52.48 -0.16 2.38 16 38 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.08 6.94 -51.93 -0.36 0.72 16 43 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.70 7.41 -51.93 -0.38 0.32 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -35.20 368.25 -9.72 -44.92 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.81 Total: 12.42 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -4.06 Total: -0.59 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -0.15 Total: -67.19 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.16 Total: -15.32 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.09 Total: 20.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.20 -9.72 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202098006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.732 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds