Wall clock time and date at job start Wed Apr 1 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00388 * 2 1 4 4 H 1.48502 * 109.47130 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47262 * 119.99830 * 3 2 1 6 6 H 1.48496 * 109.47166 * 239.99635 * 3 2 1 7 7 C 1.38819 * 119.99474 * 180.27164 * 2 1 3 8 8 H 1.07993 * 119.99804 * 179.73333 * 7 2 1 9 9 N 1.36935 * 120.00015 * 359.72743 * 7 2 1 10 10 C 1.46502 * 119.99983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47408 * 304.99222 * 11 10 9 13 13 C 1.54809 * 109.46460 * 185.00073 * 11 10 9 14 14 N 1.45126 * 109.53909 * 172.12175 * 13 11 10 15 15 C 1.34769 * 118.75714 * 269.26333 * 14 13 11 16 16 O 1.21675 * 120.00173 * 173.70337 * 15 14 13 17 17 C 1.46930 * 120.00364 * 353.69567 * 15 14 13 18 18 C 1.36356 * 126.82323 * 39.27196 * 17 15 14 19 19 N 1.35575 * 109.75081 * 179.83289 * 18 17 15 20 20 H 0.96995 * 124.72306 * 180.18283 * 19 18 17 21 21 C 1.37700 * 110.55885 * 0.44807 * 19 18 17 22 22 N 1.32672 * 132.95279 * 179.70720 * 21 19 18 23 23 C 1.31604 * 121.69166 * 180.02562 * 22 21 19 24 24 C 1.38582 * 121.54255 * 0.02562 * 23 22 21 25 25 C 1.38332 * 119.32659 * 359.95468 * 24 23 22 26 26 C 1.39349 * 118.05691 * 0.04894 * 25 24 23 27 27 C 1.47511 * 122.48549 * 89.27606 * 14 13 11 28 28 C 1.53573 * 111.03158 * 318.37511 * 27 14 13 29 29 C 1.51537 * 109.57762 * 320.01778 * 28 27 14 30 30 O 1.38015 * 109.47334 * 64.99480 * 11 10 9 31 31 H 0.96994 * 120.00758 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99845 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.46859 * 299.99974 * 10 9 7 34 34 H 1.08997 * 109.46957 * 60.00021 * 10 9 7 35 35 H 1.08998 * 109.46136 * 292.13501 * 13 11 10 36 36 H 1.08993 * 109.46259 * 52.10075 * 13 11 10 37 37 H 1.08005 * 125.12297 * 359.97438 * 18 17 15 38 38 H 1.08007 * 119.22403 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.33500 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.97335 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.16334 * 78.77553 * 27 14 13 42 42 H 1.09002 * 109.16776 * 197.97674 * 27 14 13 43 43 H 1.08994 * 109.45350 * 80.05534 * 28 27 14 44 44 H 1.09003 * 109.45151 * 200.00917 * 28 27 14 45 45 H 1.08997 * 109.58683 * 211.18490 * 29 28 27 46 46 H 1.09000 * 109.59133 * 331.47612 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6962 -1.2124 7 6 2.0102 -1.2023 -0.0057 8 1 3.0901 -1.2023 -0.0101 9 7 1.3254 -2.3881 -0.0057 10 6 2.0579 -3.6569 -0.0111 11 6 1.0635 -4.8197 -0.0105 12 1 0.3822 -4.7148 0.8339 13 6 1.8337 -6.1570 0.1109 14 7 0.8913 -7.2446 0.2988 15 6 0.5483 -7.5957 1.5539 16 8 -0.3236 -8.4244 1.7371 17 6 1.2273 -6.9780 2.7012 18 6 1.6041 -5.6732 2.8223 19 7 2.2000 -5.4781 4.0244 20 1 2.5488 -4.6286 4.3367 21 6 2.2464 -6.6549 4.7378 22 7 2.7248 -6.9681 5.9350 23 6 2.6502 -8.1929 6.4106 24 6 2.0677 -9.2188 5.6834 25 6 1.5511 -8.9511 4.4284 26 6 1.6422 -7.6467 3.9467 27 6 0.2949 -7.9804 -0.8320 28 6 -0.1002 -7.0227 -1.9657 29 6 -0.6971 -5.7596 -1.3785 30 8 0.3425 -4.8091 -1.1874 31 1 -0.4851 -0.8399 -0.0004 32 1 0.3555 -2.3880 -0.0013 33 1 2.6811 -3.7127 -0.9035 34 1 2.6878 -3.7166 0.8764 35 1 2.4093 -6.3285 -0.7986 36 1 2.5095 -6.1106 0.9648 37 1 1.4490 -4.9096 2.0744 38 1 3.0524 -8.4035 7.3906 39 1 2.0173 -10.2170 6.0925 40 1 1.0917 -9.7305 3.8386 41 1 1.0181 -8.7031 -1.2099 42 1 -0.5923 -8.5106 -0.4860 43 1 0.7835 -6.7686 -2.5509 44 1 -0.8353 -7.5059 -2.6094 45 1 -1.4414 -5.3543 -2.0638 46 1 -1.1670 -5.9879 -0.4218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202098006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:39 Heat of formation + Delta-G solvation = 6.225880 kcal Electronic energy + Delta-G solvation = -30907.516837 eV Core-core repulsion = 26798.137077 eV Total energy + Delta-G solvation = -4109.379760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.99388 -41.51883 -39.71940 -38.95265 -36.99801 -36.39776 -34.89628 -33.97179 -32.78771 -31.35467 -30.51391 -30.20478 -27.78677 -26.60942 -25.00360 -24.79781 -24.09939 -23.61660 -22.69865 -21.82907 -20.26225 -19.49045 -19.29851 -18.67200 -17.89750 -17.64971 -17.36043 -17.14967 -16.97267 -16.37199 -16.24333 -15.93362 -15.71949 -15.52253 -15.39060 -15.02325 -14.91610 -14.44659 -14.30297 -14.06310 -13.85175 -13.75559 -13.50038 -13.31504 -13.05797 -12.94381 -12.70633 -12.57264 -12.41227 -12.04752 -11.88294 -11.66010 -11.56233 -11.28343 -11.19311 -10.94416 -10.68269 -10.47858 -9.78583 -9.62075 -9.28738 -9.10148 -8.36434 -5.31051 -0.22773 0.23564 0.84342 1.55783 1.60679 1.70359 1.74493 1.86278 1.97397 2.57608 2.73045 2.81943 3.26729 3.36461 3.43853 3.49851 3.55580 3.76410 3.79544 3.82981 3.95309 3.98629 4.08403 4.09200 4.18880 4.21918 4.29040 4.35975 4.40894 4.50177 4.58834 4.69897 4.75008 4.77847 4.79911 5.00000 5.01273 5.09872 5.15428 5.25997 5.26524 5.40785 5.60608 5.75019 6.08940 6.13930 6.51432 6.60025 6.89278 6.97609 7.10233 8.00346 8.12052 9.15118 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.003677 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.927686 B = 7612.059845 C = 9986.995045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.104 4.104 3 Si 1.127 2.873 4 H -0.297 1.297 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.332 4.332 8 H 0.073 0.927 9 N -0.751 5.751 10 C 0.163 3.837 11 C 0.086 3.914 12 H 0.039 0.961 13 C 0.074 3.926 14 N -0.600 5.600 15 C 0.588 3.412 16 O -0.572 6.572 17 C -0.244 4.244 18 C 0.119 3.881 19 N -0.556 5.556 20 H 0.436 0.564 21 C 0.261 3.739 22 N -0.514 5.514 23 C 0.135 3.865 24 C -0.180 4.180 25 C -0.041 4.041 26 C -0.133 4.133 27 C 0.108 3.892 28 C -0.152 4.152 29 C 0.067 3.933 30 O -0.391 6.391 31 H 0.243 0.757 32 H 0.360 0.640 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.196 0.804 38 H 0.201 0.799 39 H 0.177 0.823 40 H 0.138 0.862 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.993 -21.589 5.533 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.295 4.295 3 Si 0.951 3.049 4 H -0.223 1.223 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.463 4.463 8 H 0.090 0.910 9 N -0.395 5.395 10 C 0.036 3.964 11 C 0.026 3.974 12 H 0.056 0.944 13 C -0.051 4.051 14 N -0.331 5.331 15 C 0.378 3.622 16 O -0.452 6.452 17 C -0.255 4.255 18 C -0.015 4.015 19 N -0.160 5.160 20 H 0.276 0.724 21 C 0.029 3.971 22 N -0.227 5.227 23 C -0.031 4.031 24 C -0.200 4.200 25 C -0.068 4.068 26 C -0.140 4.140 27 C -0.012 4.012 28 C -0.190 4.190 29 C -0.009 4.009 30 O -0.310 6.310 31 H 0.054 0.946 32 H 0.192 0.808 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.213 0.787 38 H 0.217 0.783 39 H 0.195 0.805 40 H 0.156 0.844 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.131 0.869 45 H 0.116 0.884 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.127 -19.471 5.947 21.261 hybrid contribution -0.837 -1.754 -0.338 1.973 sum 5.291 -21.226 5.609 22.583 Atomic orbital electron populations 1.70985 1.07324 1.27871 1.56226 1.27161 0.97050 1.04663 1.00635 0.82644 0.73361 0.71631 0.77219 1.22346 1.20036 1.20494 1.20387 0.92514 0.86821 1.46583 0.90952 1.42437 1.04798 1.01632 1.90654 1.20808 0.92839 0.83155 0.99559 1.22331 0.93109 0.94662 0.87273 0.94391 1.22675 0.91914 0.84805 1.05671 1.47779 1.44844 1.34759 1.05684 1.17521 0.81061 0.80923 0.82653 1.90731 1.32321 1.36252 1.85897 1.19861 1.14260 0.94418 0.96945 1.22964 0.93339 0.97393 0.87763 1.41433 1.50446 1.10294 1.13864 0.72356 1.18549 1.00265 0.86518 0.91741 1.66581 1.20952 1.23990 1.11177 1.23232 0.94123 0.85303 1.00393 1.22342 1.00589 1.02736 0.94353 1.21228 0.95390 0.94060 0.96109 1.19636 1.04258 0.95542 0.94551 1.22007 0.99642 0.94179 0.85420 1.22409 1.03437 0.95340 0.97850 1.22358 0.89205 0.89293 1.00061 1.86383 1.48965 1.57442 1.38168 0.94648 0.80781 0.94876 0.92870 0.87318 0.87871 0.78740 0.78257 0.80518 0.84417 0.89391 0.89763 0.89739 0.86868 0.88406 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.79 13.70 21.65 0.30 -60.49 16 2 C -0.10 -5.92 5.50 84.86 0.47 -5.45 16 3 Si 1.13 50.84 29.92 68.60 2.05 52.89 16 4 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.33 -18.00 9.99 84.04 0.84 -17.16 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.75 -36.43 5.54 -343.46 -1.90 -38.33 16 10 C 0.16 5.88 5.62 86.38 0.49 6.37 16 11 C 0.09 2.60 1.63 31.21 0.05 2.65 16 12 H 0.04 1.25 6.49 -2.39 -0.02 1.23 16 13 C 0.07 1.72 4.40 87.25 0.38 2.10 16 14 N -0.60 -14.69 2.19 -822.37 -1.80 -16.49 16 15 C 0.59 17.40 7.55 86.52 0.65 18.06 16 16 O -0.57 -19.92 16.40 -4.27 -0.07 -19.99 16 17 C -0.24 -6.90 5.47 -19.05 -0.10 -7.01 16 18 C 0.12 3.07 9.23 83.68 0.77 3.84 16 19 N -0.56 -13.49 5.97 -191.78 -1.15 -14.63 16 20 H 0.44 8.78 8.96 -92.71 -0.83 7.95 16 21 C 0.26 6.94 8.41 133.76 1.13 8.07 16 22 N -0.51 -12.51 10.39 -192.79 -2.00 -14.51 16 23 C 0.13 2.32 11.14 84.81 0.95 3.27 16 24 C -0.18 -2.88 10.10 22.37 0.23 -2.66 16 25 C -0.04 -0.94 10.21 22.56 0.23 -0.71 16 26 C -0.13 -3.66 6.38 -20.06 -0.13 -3.79 16 27 C 0.11 2.19 6.19 86.38 0.53 2.73 16 28 C -0.15 -2.83 5.79 30.31 0.18 -2.65 16 29 C 0.07 1.71 6.37 71.50 0.46 2.17 16 30 O -0.39 -12.66 9.38 -117.86 -1.11 -13.77 16 31 H 0.24 15.20 6.77 -92.71 -0.63 14.57 16 32 H 0.36 18.80 6.49 -92.71 -0.60 18.20 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.72 7.50 -2.39 -0.02 1.70 16 35 H 0.11 2.22 8.11 -2.39 -0.02 2.20 16 36 H 0.10 2.25 5.17 -2.39 -0.01 2.24 16 37 H 0.20 5.07 3.01 -2.91 -0.01 5.06 16 38 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.90 6.94 -2.39 -0.02 1.88 16 43 H 0.08 1.57 8.01 -2.39 -0.02 1.55 16 44 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.04 1.06 7.41 -2.39 -0.02 1.04 16 Total: -1.00 -77.61 368.25 1.20 -76.41 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.24 Total: 39.10 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 7.11 Total: 9.82 kcal Atomic # 7 Polarization: -137.91 SS G_CDS: -6.56 Total: -144.46 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.18 Total: -33.76 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -77.61 1.20 -76.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202098006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.638 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds