Wall clock time and date at job start Wed Apr 1 2020 02:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00419 * 2 1 4 4 H 1.48499 * 109.47088 * 275.57153 * 3 2 1 5 5 H 1.48502 * 109.47149 * 35.57084 * 3 2 1 6 6 H 1.48499 * 109.47282 * 155.56905 * 3 2 1 7 7 C 1.38811 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00503 * 36.63696 * 7 2 1 9 9 N 1.36945 * 120.00028 * 216.92068 * 7 2 1 10 10 C 1.46959 * 120.59520 * 25.67966 * 9 7 2 11 11 C 1.53809 * 108.39790 * 124.76274 * 10 9 7 12 12 N 1.46959 * 108.57934 * 49.63595 * 11 10 9 13 13 C 1.34781 * 120.59062 * 124.62082 * 12 11 10 14 14 O 1.21587 * 119.99818 * 174.95779 * 13 12 11 15 15 N 1.34777 * 120.00574 * 354.96746 * 13 12 11 16 16 C 1.39422 * 120.00536 * 184.74785 * 15 13 12 17 17 C 1.39156 * 119.85840 * 144.51317 * 16 15 13 18 18 C 1.37782 * 120.10833 * 180.02562 * 17 16 15 19 19 C 1.39430 * 119.66833 * 0.02562 * 18 17 16 20 20 C 1.39904 * 120.14395 * 359.97303 * 19 18 17 21 21 C 1.37480 * 119.91127 * 359.76867 * 20 19 18 22 22 C 1.50574 * 119.19340 * 180.02562 * 20 19 18 23 23 C 1.52692 * 109.90295 * 326.00933 * 22 20 19 24 24 N 1.46040 * 111.03642 * 51.12530 * 23 22 20 25 25 C 1.34790 * 121.20533 * 322.26887 * 24 23 22 26 26 O 1.21595 * 120.43026 * 182.75733 * 25 24 23 27 27 C 1.46962 * 118.81733 * 304.65225 * 12 11 10 28 28 C 1.46962 * 120.59212 * 205.96743 * 9 7 2 29 29 H 0.97001 * 119.99503 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.61216 * 244.54723 * 10 9 7 31 31 H 1.09008 * 109.60797 * 5.05957 * 10 9 7 32 32 H 1.09002 * 109.74499 * 289.84866 * 11 10 9 33 33 H 1.09002 * 109.67720 * 169.39041 * 11 10 9 34 34 H 0.97003 * 119.99138 * 4.74418 * 15 13 12 35 35 H 1.07998 * 119.94738 * 0.04014 * 17 16 15 36 36 H 1.07998 * 120.16567 * 179.97438 * 18 17 16 37 37 H 1.07995 * 120.05972 * 180.26699 * 21 20 19 38 38 H 1.09001 * 109.39564 * 86.13899 * 22 20 19 39 39 H 1.08996 * 109.39699 * 205.96138 * 22 20 19 40 40 H 1.09003 * 109.16753 * 171.52226 * 23 22 20 41 41 H 1.08999 * 109.16475 * 290.77436 * 23 22 20 42 42 H 0.96996 * 119.39418 * 142.29630 * 24 23 22 43 43 H 1.09008 * 109.60528 * 295.47863 * 27 12 11 44 44 H 1.09000 * 109.61661 * 174.97074 * 27 12 11 45 45 H 1.09003 * 109.60988 * 354.94574 * 28 9 7 46 46 H 1.09000 * 109.60868 * 115.28226 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3801 2.1142 -1.3935 5 1 1.5116 2.6158 0.8144 6 1 3.6017 1.4089 0.5791 7 6 2.0101 -1.2022 0.0005 8 1 1.6302 -2.0454 -0.5572 9 7 3.1736 -1.3209 0.7130 10 6 3.4250 -0.4670 1.8824 11 6 3.7281 -1.3724 3.0883 12 7 4.7503 -2.3516 2.6934 13 6 5.8959 -2.4676 3.3940 14 8 6.6934 -3.3419 3.1147 15 7 6.1574 -1.6147 4.4043 16 6 7.3842 -1.6710 5.0644 17 6 7.9815 -0.4987 5.5175 18 6 9.1941 -0.5482 6.1699 19 6 9.8189 -1.7781 6.3728 20 6 9.2169 -2.9557 5.9166 21 6 8.0043 -2.9002 5.2710 22 6 9.9101 -4.2722 6.1478 23 6 11.4234 -4.0831 6.0721 24 7 11.8584 -2.9869 6.9334 25 6 11.1194 -1.8675 7.0661 26 8 11.5188 -0.9430 7.7475 27 6 4.5015 -3.2015 1.5206 28 6 4.1959 -2.3000 0.3181 29 1 -0.4849 0.8401 -0.0004 30 1 4.2782 0.1818 1.6851 31 1 2.5424 0.1381 2.0900 32 1 2.8212 -1.8937 3.3946 33 1 4.1002 -0.7687 3.9161 34 1 5.4920 -0.9617 4.6722 35 1 7.4938 0.4516 5.3578 36 1 9.6587 0.3611 6.5216 37 1 7.5354 -3.8081 4.9216 38 1 9.6418 -4.6545 7.1326 39 1 9.5970 -4.9850 5.3850 40 1 11.9153 -5.0031 6.3880 41 1 11.7054 -3.8620 5.0427 42 1 12.6946 -3.0657 7.4186 43 1 3.6496 -3.8531 1.7152 44 1 5.3855 -3.8038 1.3111 45 1 3.8227 -2.9057 -0.5077 46 1 5.1018 -1.7785 0.0090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207570252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:08 Heat of formation + Delta-G solvation = 14.037588 kcal Electronic energy + Delta-G solvation = -29892.146206 eV Core-core repulsion = 25783.105187 eV Total energy + Delta-G solvation = -4109.041018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15975 -40.35404 -38.49094 -37.22706 -36.44993 -34.79747 -34.06756 -32.31359 -31.73507 -30.81191 -29.81386 -29.32343 -27.21438 -24.59212 -24.27752 -23.41764 -23.24016 -22.02366 -21.21170 -19.76996 -19.50613 -18.45211 -17.60021 -17.42544 -17.01708 -16.49781 -15.95129 -15.72210 -15.28131 -15.05567 -14.85337 -14.57489 -14.41072 -14.17681 -14.00845 -13.91147 -13.65430 -13.48977 -13.19137 -13.05824 -12.89539 -12.71051 -12.32396 -12.24588 -12.02512 -11.83047 -11.40188 -11.15074 -10.92523 -10.60217 -10.51149 -10.41789 -10.27450 -10.22561 -9.86557 -9.57104 -9.46454 -8.99752 -8.89880 -8.45623 -8.17260 -7.13177 -6.18054 -3.37864 0.61665 1.18498 2.48541 2.59315 2.94300 3.15989 3.27709 3.40823 3.46392 3.65394 3.76393 4.24775 4.32690 4.41635 4.42698 4.70472 4.75426 4.78832 4.93889 5.02607 5.10616 5.20597 5.26679 5.35582 5.45661 5.47594 5.51881 5.57310 5.76895 5.78016 5.91082 5.92805 5.94012 6.07778 6.14778 6.15015 6.29980 6.38636 6.46893 6.51874 6.60345 6.70527 6.81055 6.88363 6.96867 7.77221 7.83531 7.94289 8.15738 8.48639 8.78346 9.57322 9.96147 10.96104 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023226 B = 0.002392 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.248406 B =11705.105185 C =12496.518743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.039 3.961 3 Si 0.835 3.165 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.277 4.277 8 H 0.084 0.916 9 N -0.599 5.599 10 C 0.132 3.868 11 C 0.089 3.911 12 N -0.609 5.609 13 C 0.705 3.295 14 O -0.582 6.582 15 N -0.690 5.690 16 C 0.208 3.792 17 C -0.166 4.166 18 C -0.032 4.032 19 C -0.169 4.169 20 C -0.032 4.032 21 C -0.128 4.128 22 C -0.101 4.101 23 C 0.115 3.885 24 N -0.729 5.729 25 C 0.571 3.429 26 O -0.543 6.543 27 C 0.113 3.887 28 C 0.131 3.869 29 H 0.264 0.736 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.403 0.597 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.216 -7.557 13.477 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.163 4.163 3 Si 0.662 3.338 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.404 4.404 8 H 0.102 0.898 9 N -0.322 5.322 10 C 0.005 3.995 11 C -0.036 4.036 12 N -0.344 5.344 13 C 0.407 3.593 14 O -0.460 6.460 15 N -0.339 5.339 16 C 0.111 3.889 17 C -0.186 4.186 18 C -0.052 4.052 19 C -0.173 4.173 20 C -0.033 4.033 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.010 4.010 24 N -0.382 5.382 25 C 0.360 3.640 26 O -0.421 6.421 27 C -0.011 4.011 28 C 0.004 3.996 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.249 0.751 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.239 0.761 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 18.509 -7.642 13.387 24.087 hybrid contribution 0.173 1.473 0.070 1.485 sum 18.682 -6.169 13.457 23.836 Atomic orbital electron populations 1.70111 1.06196 1.27006 1.48374 1.25202 0.94804 0.97465 0.98785 0.87632 0.81994 0.86030 0.78177 1.21940 1.21994 1.18267 1.18776 0.96033 0.96893 1.28656 0.89837 1.44280 1.18082 1.41574 1.28247 1.21797 0.99677 0.92072 0.85997 1.22556 0.91220 0.91489 0.98370 1.47267 1.16630 1.40120 1.30377 1.15815 0.82479 0.81731 0.79264 1.90868 1.48288 1.36014 1.70820 1.42856 1.16657 1.39035 1.35323 1.17738 0.85604 0.93598 0.91981 1.20902 0.96576 0.97042 1.04127 1.20857 0.93100 0.97044 0.94154 1.19593 0.96663 0.94340 1.06697 1.19795 0.94336 0.94138 0.95058 1.21079 0.95878 0.98000 0.99875 1.20834 0.93913 0.95009 1.04125 1.21308 0.94717 0.89829 0.95105 1.45704 1.25466 1.17643 1.49358 1.18228 0.84349 0.81454 0.80016 1.90807 1.72704 1.37607 1.40989 1.22178 1.01390 0.92830 0.84662 1.21389 0.92018 0.91772 0.94419 0.92641 0.94848 0.90303 0.90365 0.91861 0.75128 0.84903 0.84469 0.83314 0.89436 0.88174 0.89282 0.91314 0.76126 0.91300 0.89425 0.90480 0.95548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.08 13.97 55.49 0.78 -24.31 16 2 C 0.04 1.05 4.82 -17.43 -0.08 0.96 16 3 Si 0.83 19.92 26.41 -169.99 -4.49 15.43 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -5.81 4.92 56.52 0.28 -5.53 16 7 C -0.28 -7.14 9.85 -15.06 -0.15 -7.29 16 8 H 0.08 2.31 8.05 -52.49 -0.42 1.88 16 9 N -0.60 -13.01 2.72 -171.77 -0.47 -13.48 16 10 C 0.13 2.53 4.56 -3.37 -0.02 2.52 16 11 C 0.09 1.33 6.61 -3.37 -0.02 1.31 16 12 N -0.61 -9.52 2.95 -177.94 -0.52 -10.04 16 13 C 0.70 10.82 8.13 -86.91 -0.71 10.11 16 14 O -0.58 -10.13 13.21 5.29 0.07 -10.06 16 15 N -0.69 -8.58 5.23 -14.20 -0.07 -8.65 16 16 C 0.21 2.54 6.29 -83.70 -0.53 2.02 16 17 C -0.17 -1.79 9.95 -39.41 -0.39 -2.18 16 18 C -0.03 -0.36 9.63 -39.30 -0.38 -0.74 16 19 C -0.17 -1.96 5.78 -104.99 -0.61 -2.57 16 20 C -0.03 -0.34 5.68 -104.34 -0.59 -0.93 16 21 C -0.13 -1.56 8.34 -39.49 -0.33 -1.89 16 22 C -0.10 -0.72 6.04 -28.10 -0.17 -0.89 16 23 C 0.11 0.67 7.03 -4.45 -0.03 0.64 16 24 N -0.73 -5.90 5.58 -61.78 -0.34 -6.24 16 25 C 0.57 6.76 7.78 -12.41 -0.10 6.66 16 26 O -0.54 -8.16 17.45 5.28 0.09 -8.07 16 27 C 0.11 1.82 6.58 -3.60 -0.02 1.80 16 28 C 0.13 2.39 6.67 -3.60 -0.02 2.37 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.66 6.76 -51.93 -0.35 0.31 16 31 H 0.08 1.63 5.51 -51.92 -0.29 1.35 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.73 5.55 -51.93 -0.29 0.44 16 34 H 0.41 4.18 6.27 -40.82 -0.26 3.92 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.14 1.44 7.84 -52.49 -0.41 1.03 16 37 H 0.15 1.96 6.25 -52.49 -0.33 1.63 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.62 8.07 -51.93 -0.42 0.20 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.40 2.55 8.92 -40.82 -0.36 2.18 16 43 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 44 H 0.09 1.36 7.02 -51.93 -0.36 0.99 16 45 H 0.08 1.37 7.93 -51.93 -0.41 0.95 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -33.36 363.77 -9.75 -43.11 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.12 Total: 4.91 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: -4.15 Total: 11.91 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.63 Total: -62.72 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.16 Total: -18.13 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.49 Total: 15.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.36 -9.75 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207570252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.150 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds