Wall clock time and date at job start Wed Apr 1 2020 02:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00419 * 2 1 4 4 H 1.48499 * 109.47088 * 275.57153 * 3 2 1 5 5 H 1.48502 * 109.47149 * 35.57084 * 3 2 1 6 6 H 1.48499 * 109.47282 * 155.56905 * 3 2 1 7 7 C 1.38811 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00503 * 36.63696 * 7 2 1 9 9 N 1.36945 * 120.00028 * 216.92068 * 7 2 1 10 10 C 1.46959 * 120.59520 * 25.67966 * 9 7 2 11 11 C 1.53809 * 108.39790 * 124.76274 * 10 9 7 12 12 N 1.46959 * 108.57934 * 49.63595 * 11 10 9 13 13 C 1.34781 * 120.59062 * 124.62082 * 12 11 10 14 14 O 1.21587 * 119.99818 * 174.95779 * 13 12 11 15 15 N 1.34777 * 120.00574 * 354.96746 * 13 12 11 16 16 C 1.39422 * 120.00536 * 184.74785 * 15 13 12 17 17 C 1.39156 * 119.85840 * 144.51317 * 16 15 13 18 18 C 1.37782 * 120.10833 * 180.02562 * 17 16 15 19 19 C 1.39430 * 119.66833 * 0.02562 * 18 17 16 20 20 C 1.39904 * 120.14395 * 359.97303 * 19 18 17 21 21 C 1.37480 * 119.91127 * 359.76867 * 20 19 18 22 22 C 1.50574 * 119.19340 * 180.02562 * 20 19 18 23 23 C 1.52692 * 109.90295 * 326.00933 * 22 20 19 24 24 N 1.46040 * 111.03642 * 51.12530 * 23 22 20 25 25 C 1.34790 * 121.20533 * 322.26887 * 24 23 22 26 26 O 1.21595 * 120.43026 * 182.75733 * 25 24 23 27 27 C 1.46962 * 118.81733 * 304.65225 * 12 11 10 28 28 C 1.46962 * 120.59212 * 205.96743 * 9 7 2 29 29 H 0.97001 * 119.99503 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.61216 * 244.54723 * 10 9 7 31 31 H 1.09008 * 109.60797 * 5.05957 * 10 9 7 32 32 H 1.09002 * 109.74499 * 289.84866 * 11 10 9 33 33 H 1.09002 * 109.67720 * 169.39041 * 11 10 9 34 34 H 0.97003 * 119.99138 * 4.74418 * 15 13 12 35 35 H 1.07998 * 119.94738 * 0.04014 * 17 16 15 36 36 H 1.07998 * 120.16567 * 179.97438 * 18 17 16 37 37 H 1.07995 * 120.05972 * 180.26699 * 21 20 19 38 38 H 1.09001 * 109.39564 * 86.13899 * 22 20 19 39 39 H 1.08996 * 109.39699 * 205.96138 * 22 20 19 40 40 H 1.09003 * 109.16753 * 171.52226 * 23 22 20 41 41 H 1.08999 * 109.16475 * 290.77436 * 23 22 20 42 42 H 0.96996 * 119.39418 * 142.29630 * 24 23 22 43 43 H 1.09008 * 109.60528 * 295.47863 * 27 12 11 44 44 H 1.09000 * 109.61661 * 174.97074 * 27 12 11 45 45 H 1.09003 * 109.60988 * 354.94574 * 28 9 7 46 46 H 1.09000 * 109.60868 * 115.28226 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3801 2.1142 -1.3935 5 1 1.5116 2.6158 0.8144 6 1 3.6017 1.4089 0.5791 7 6 2.0101 -1.2022 0.0005 8 1 1.6302 -2.0454 -0.5572 9 7 3.1736 -1.3209 0.7130 10 6 3.4250 -0.4670 1.8824 11 6 3.7281 -1.3724 3.0883 12 7 4.7503 -2.3516 2.6934 13 6 5.8959 -2.4676 3.3940 14 8 6.6934 -3.3419 3.1147 15 7 6.1574 -1.6147 4.4043 16 6 7.3842 -1.6710 5.0644 17 6 7.9815 -0.4987 5.5175 18 6 9.1941 -0.5482 6.1699 19 6 9.8189 -1.7781 6.3728 20 6 9.2169 -2.9557 5.9166 21 6 8.0043 -2.9002 5.2710 22 6 9.9101 -4.2722 6.1478 23 6 11.4234 -4.0831 6.0721 24 7 11.8584 -2.9869 6.9334 25 6 11.1194 -1.8675 7.0661 26 8 11.5188 -0.9430 7.7475 27 6 4.5015 -3.2015 1.5206 28 6 4.1959 -2.3000 0.3181 29 1 -0.4849 0.8401 -0.0004 30 1 4.2782 0.1818 1.6851 31 1 2.5424 0.1381 2.0900 32 1 2.8212 -1.8937 3.3946 33 1 4.1002 -0.7687 3.9161 34 1 5.4920 -0.9617 4.6722 35 1 7.4938 0.4516 5.3578 36 1 9.6587 0.3611 6.5216 37 1 7.5354 -3.8081 4.9216 38 1 9.6418 -4.6545 7.1326 39 1 9.5970 -4.9850 5.3850 40 1 11.9153 -5.0031 6.3880 41 1 11.7054 -3.8620 5.0427 42 1 12.6946 -3.0657 7.4186 43 1 3.6496 -3.8531 1.7152 44 1 5.3855 -3.8038 1.3111 45 1 3.8227 -2.9057 -0.5077 46 1 5.1018 -1.7785 0.0090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207570252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:07 Heat of formation + Delta-G solvation = -9.226168 kcal Electronic energy + Delta-G solvation = -29893.154998 eV Core-core repulsion = 25783.105187 eV Total energy + Delta-G solvation = -4110.049811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.13904 -41.33941 -39.54685 -38.53078 -37.26817 -35.87749 -35.56048 -33.54520 -33.08746 -32.21681 -30.82011 -30.02909 -28.75387 -25.79293 -25.08226 -24.88764 -24.48864 -22.85827 -22.54739 -20.85912 -20.53520 -19.71268 -18.62254 -18.26492 -18.12025 -17.85210 -17.10847 -16.84469 -16.47406 -16.29861 -15.95549 -15.88710 -15.59563 -15.41868 -15.09308 -14.95460 -14.79487 -14.67856 -14.29483 -14.15795 -14.06822 -13.91058 -13.60710 -13.44257 -13.08983 -12.76862 -12.52768 -12.49490 -12.32077 -12.19256 -12.10914 -11.89492 -11.44525 -11.40203 -11.19517 -10.97811 -10.68407 -10.17690 -9.96282 -9.80304 -9.20876 -8.86487 -8.22581 -5.38599 -0.26525 0.34157 1.34824 1.40687 1.49214 1.53432 1.62891 2.04264 2.28090 2.44354 2.64366 2.79360 2.94399 3.37076 3.55853 3.60412 3.76711 3.98220 4.05557 4.10648 4.18761 4.21209 4.31661 4.34013 4.38537 4.44031 4.56654 4.56730 4.69402 4.76597 4.83574 4.87617 4.93120 5.00360 5.04182 5.09004 5.14897 5.22460 5.31153 5.39906 5.47125 5.83200 5.84135 5.86332 5.95786 6.12464 6.13523 6.71584 6.89892 7.15632 7.32879 7.62563 8.04240 8.95150 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023226 B = 0.002392 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.248406 B =11705.105185 C =12496.518743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 0.897 3.103 4 H -0.308 1.308 5 H -0.294 1.294 6 H -0.235 1.235 7 C -0.263 4.263 8 H 0.053 0.947 9 N -0.612 5.612 10 C 0.125 3.875 11 C 0.100 3.900 12 N -0.612 5.612 13 C 0.706 3.294 14 O -0.603 6.603 15 N -0.678 5.678 16 C 0.191 3.809 17 C -0.159 4.159 18 C -0.040 4.040 19 C -0.182 4.182 20 C -0.029 4.029 21 C -0.140 4.140 22 C -0.103 4.103 23 C 0.112 3.888 24 N -0.715 5.715 25 C 0.565 3.435 26 O -0.585 6.585 27 C 0.124 3.876 28 C 0.130 3.870 29 H 0.263 0.737 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.420 0.580 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.412 0.588 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.511 -8.003 14.898 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.210 4.210 3 Si 0.725 3.275 4 H -0.236 1.236 5 H -0.221 1.221 6 H -0.158 1.158 7 C -0.392 4.392 8 H 0.071 0.929 9 N -0.336 5.336 10 C -0.001 4.001 11 C -0.025 4.025 12 N -0.348 5.348 13 C 0.409 3.591 14 O -0.483 6.483 15 N -0.328 5.328 16 C 0.095 3.905 17 C -0.180 4.180 18 C -0.060 4.060 19 C -0.186 4.186 20 C -0.030 4.030 21 C -0.160 4.160 22 C -0.140 4.140 23 C -0.011 4.011 24 N -0.367 5.367 25 C 0.354 3.646 26 O -0.467 6.467 27 C 0.000 4.000 28 C 0.005 3.995 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.262 0.738 35 H 0.172 0.828 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.146 0.854 41 H 0.088 0.912 42 H 0.250 0.750 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 20.870 -8.115 14.842 26.864 hybrid contribution -0.467 1.479 -0.373 1.595 sum 20.404 -6.636 14.469 25.879 Atomic orbital electron populations 1.70191 1.07703 1.27503 1.51535 1.25677 0.95217 1.00252 0.99818 0.86643 0.81792 0.81994 0.77105 1.23647 1.22060 1.15818 1.18710 0.96954 0.95788 1.27701 0.92926 1.44401 1.17770 1.42470 1.28970 1.21851 0.99024 0.92555 0.86645 1.22393 0.91493 0.91053 0.97532 1.47240 1.16963 1.40182 1.30380 1.15858 0.81894 0.81808 0.79582 1.90858 1.48822 1.37041 1.71569 1.42658 1.17071 1.38530 1.34492 1.17919 0.85732 0.94199 0.92673 1.21048 0.96216 0.97486 1.03209 1.21029 0.93396 0.97321 0.94238 1.19787 0.96912 0.94944 1.06962 1.20097 0.93762 0.95403 0.93745 1.21084 0.96574 0.97679 1.00673 1.20960 0.94434 0.93410 1.05179 1.21550 0.94152 0.90458 0.94922 1.45705 1.25244 1.16991 1.48783 1.18360 0.84692 0.81893 0.79692 1.90781 1.73656 1.39276 1.42941 1.21962 1.01724 0.92311 0.84008 1.21476 0.91020 0.91374 0.95658 0.92833 0.94478 0.91838 0.90618 0.87715 0.73845 0.82778 0.84141 0.84401 0.88233 0.86955 0.85382 0.91176 0.75008 0.91283 0.88599 0.90570 0.95309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.97 21.65 0.30 -53.98 16 2 C -0.01 -0.63 4.82 84.86 0.41 -0.22 16 3 Si 0.90 41.49 26.41 68.60 1.81 43.30 16 4 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.23 -9.82 4.92 99.48 0.49 -9.33 16 7 C -0.26 -13.72 9.85 84.03 0.83 -12.89 16 8 H 0.05 3.02 8.05 -2.91 -0.02 2.99 16 9 N -0.61 -26.09 2.72 -697.36 -1.89 -27.98 16 10 C 0.13 4.57 4.56 86.56 0.39 4.97 16 11 C 0.10 2.74 6.61 86.56 0.57 3.31 16 12 N -0.61 -17.70 2.95 -835.15 -2.46 -20.16 16 13 C 0.71 19.99 8.13 179.05 1.46 21.44 16 14 O -0.60 -19.87 13.21 -3.99 -0.05 -19.93 16 15 N -0.68 -15.02 5.23 -317.09 -1.66 -16.68 16 16 C 0.19 4.28 6.29 38.39 0.24 4.52 16 17 C -0.16 -3.09 9.95 22.38 0.22 -2.87 16 18 C -0.04 -0.85 9.63 22.45 0.22 -0.64 16 19 C -0.18 -3.98 5.78 -20.10 -0.12 -4.10 16 20 C -0.03 -0.55 5.68 -19.68 -0.11 -0.67 16 21 C -0.14 -3.17 8.34 22.33 0.19 -2.98 16 22 C -0.10 -1.18 6.04 29.71 0.18 -1.00 16 23 C 0.11 0.95 7.03 86.36 0.61 1.55 16 24 N -0.72 -9.98 5.58 -467.63 -2.61 -12.59 16 25 C 0.56 12.71 7.78 86.73 0.67 13.39 16 26 O -0.58 -17.38 17.45 -4.01 -0.07 -17.45 16 27 C 0.12 3.79 6.58 86.42 0.57 4.35 16 28 C 0.13 4.64 6.67 86.42 0.58 5.22 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.04 1.34 6.76 -2.39 -0.02 1.33 16 31 H 0.06 2.53 5.51 -2.38 -0.01 2.51 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.10 2.00 5.55 -2.39 -0.01 1.99 16 34 H 0.42 7.11 6.27 -92.71 -0.58 6.53 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.14 2.83 7.84 -2.91 -0.02 2.80 16 37 H 0.14 3.45 6.25 -2.91 -0.02 3.43 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 1.06 8.07 -2.39 -0.02 1.04 16 40 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.41 4.29 8.92 -92.71 -0.83 3.46 16 43 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.10 2.80 7.02 -2.39 -0.02 2.79 16 45 H 0.08 2.68 7.93 -2.39 -0.02 2.66 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -73.59 363.77 -0.30 -73.89 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.58 Total: 18.20 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 6.91 Total: 33.39 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -8.32 Total: -131.40 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.12 Total: -37.38 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.81 Total: 43.30 kcal Total: -73.59 -0.30 -73.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207570252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.663 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds