Wall clock time and date at job start Wed Apr 1 2020 02:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34642 * 116.99404 * 2 1 4 4 O 1.21510 * 120.00577 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99584 * 179.97438 * 3 2 1 6 6 C 1.46504 * 119.99546 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.46631 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00375 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99704 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99948 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.28786 * 35.67454 * 10 9 7 12 12 C 1.54379 * 110.32244 * 273.54967 * 10 9 7 13 13 N 1.48562 * 104.59081 * 217.14895 * 12 10 9 14 14 C 1.46904 * 110.99976 * 159.04035 * 13 12 10 15 15 C 1.50697 * 109.46892 * 169.99611 * 14 13 12 16 16 O 1.21291 * 120.00763 * 359.72740 * 15 14 13 17 17 N 1.34784 * 119.99774 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99968 * 179.72830 * 17 15 14 19 19 H 1.08005 * 120.00127 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00107 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99828 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00407 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46940 * 60.00199 * 22 20 18 24 24 H 1.48496 * 109.47341 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47121 * 300.00728 * 22 20 18 26 26 C 1.48557 * 104.22215 * 39.48172 * 13 12 10 27 27 C 1.54257 * 110.40909 * 157.86030 * 10 9 7 28 28 H 1.09004 * 110.32078 * 237.94237 * 27 10 9 29 29 O 1.42897 * 110.32366 * 0.04223 * 27 10 9 30 30 H 1.08997 * 109.47247 * 60.00161 * 1 2 3 31 31 H 1.08996 * 109.46470 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47147 * 300.00162 * 1 2 3 33 33 H 0.96993 * 120.00151 * 0.02562 * 5 3 2 34 34 H 1.08991 * 109.47164 * 60.00683 * 6 5 3 35 35 H 1.08994 * 109.47132 * 299.99889 * 6 5 3 36 36 H 0.96993 * 120.00215 * 0.02562 * 9 7 6 37 37 H 1.09003 * 110.41445 * 98.37350 * 12 10 9 38 38 H 1.08999 * 110.41005 * 335.92466 * 12 10 9 39 39 H 1.09001 * 109.46900 * 50.00271 * 14 13 12 40 40 H 1.08993 * 109.47169 * 289.99992 * 14 13 12 41 41 H 0.97005 * 119.99846 * 359.72750 * 17 15 14 42 42 H 0.96990 * 120.00373 * 180.02562 * 21 20 18 43 43 H 1.09004 * 110.41098 * 79.29869 * 26 13 12 44 44 H 1.09005 * 110.40948 * 201.73925 * 26 13 12 45 45 H 0.96704 * 113.99716 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5757 0.0000 7 6 5.5682 2.3783 0.0001 8 8 6.0318 1.2576 0.0001 9 7 6.3891 3.4473 0.0001 10 6 7.8415 3.2554 0.0008 11 1 8.1077 2.3824 -0.5951 12 6 8.3607 3.0967 1.4460 13 7 9.6688 3.8010 1.4532 14 6 10.0586 4.1735 2.8197 15 6 11.4853 4.6589 2.8203 16 8 12.1170 4.6868 1.7853 17 7 12.0610 5.0575 3.9720 18 6 13.3606 5.4939 3.9735 19 1 13.9233 5.5178 3.0520 20 6 13.9540 5.9053 5.1608 21 7 13.2695 5.8756 6.2822 22 14 15.7250 6.4992 5.1631 23 1 15.8525 7.6792 4.2706 24 1 16.1184 6.8776 6.5441 25 1 16.6122 5.4123 4.6763 26 6 9.4383 5.0075 0.6177 27 6 8.5504 4.5124 -0.5441 28 1 9.1631 4.2567 -1.4086 29 8 7.5902 5.5108 -0.8952 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.9374 0.4569 0.0005 34 1 3.7809 3.1332 0.8894 35 1 3.7816 3.1321 -0.8905 36 1 6.0184 4.3435 0.0005 37 1 8.4952 2.0425 1.6881 38 1 7.6731 3.5648 2.1505 39 1 9.9701 3.3049 3.4723 40 1 9.4046 4.9672 3.1805 41 1 11.5557 5.0356 4.7998 42 1 13.6834 6.1631 7.1108 43 1 8.9194 5.7746 1.1926 44 1 10.3842 5.3919 0.2360 45 1 7.9788 6.3245 -1.2446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219271241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:35 Heat of formation + Delta-G solvation = -176.411595 kcal Electronic energy + Delta-G solvation = -29634.360236 eV Core-core repulsion = 25073.918707 eV Total energy + Delta-G solvation = -4560.441529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97704 -40.37362 -39.15132 -37.93518 -36.99928 -35.90890 -35.03663 -34.52586 -33.85568 -31.33500 -30.69089 -29.16058 -28.10485 -27.19637 -26.20684 -24.26716 -22.04845 -21.60841 -21.17012 -20.66826 -19.56914 -19.23137 -17.96152 -17.74762 -17.37778 -17.09262 -17.04681 -16.17445 -16.13534 -15.85549 -15.47193 -15.07738 -14.95304 -14.62202 -14.45240 -14.14112 -14.07529 -13.82245 -13.60297 -13.45973 -13.10663 -12.94667 -12.85801 -12.45515 -12.16822 -12.13850 -11.61787 -11.52150 -11.37803 -11.17267 -11.16056 -11.05917 -10.92900 -10.46475 -10.35901 -10.24820 -10.19569 -9.76124 -9.51482 -9.38029 -8.63063 -8.12297 -7.98607 -6.44030 -3.85112 1.64408 2.16593 2.41379 2.73010 3.18024 3.24196 3.28198 3.70541 3.86657 3.86929 4.06001 4.23808 4.37461 4.43577 4.50662 4.74934 4.81346 4.84859 4.85078 4.96530 5.09058 5.10059 5.16977 5.21633 5.31364 5.56288 5.64932 5.69111 5.74442 5.81415 5.88307 5.94127 6.06229 6.12970 6.22016 6.88175 6.95611 7.01726 7.15537 7.31630 7.52459 7.81325 7.89957 8.02839 8.58764 9.15338 9.51338 10.02972 10.73599 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024150 B = 0.001716 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.126886 B =16315.306638 C =16932.719080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.651 3.349 4 O -0.574 6.574 5 N -0.698 5.698 6 C 0.119 3.881 7 C 0.509 3.491 8 O -0.536 6.536 9 N -0.701 5.701 10 C 0.152 3.848 11 H 0.108 0.892 12 C 0.019 3.981 13 N -0.477 5.477 14 C 0.036 3.964 15 C 0.445 3.555 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.005 3.995 27 C 0.095 3.905 28 H 0.081 0.919 29 O -0.569 6.569 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.420 0.580 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.414 0.586 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.052 0.948 44 H 0.103 0.897 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.561 -5.739 -11.751 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.403 3.597 4 O -0.463 6.463 5 N -0.360 5.360 6 C -0.007 4.007 7 C 0.294 3.706 8 O -0.413 6.413 9 N -0.355 5.355 10 C 0.047 3.953 11 H 0.126 0.874 12 C -0.110 4.110 13 N -0.202 5.202 14 C -0.096 4.096 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.123 4.123 27 C 0.035 3.965 28 H 0.099 0.901 29 O -0.375 6.375 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.251 0.749 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.121 0.879 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -22.094 -6.776 -12.251 26.156 hybrid contribution 0.315 1.405 0.967 1.734 sum -21.779 -5.371 -11.284 25.110 Atomic orbital electron populations 1.23235 0.74039 1.03665 1.02854 1.86260 1.24417 1.30682 1.86949 1.17962 0.83024 0.82338 0.76327 1.91018 1.64675 1.34831 1.55746 1.44183 1.03319 1.10393 1.78134 1.20991 0.89218 0.84946 1.05557 1.20387 0.88549 0.85263 0.76420 1.90739 1.77163 1.23617 1.49737 1.45639 1.06176 1.09636 1.74038 1.21798 0.78675 0.97914 0.96929 0.87419 1.23620 0.90774 1.01166 0.95453 1.65097 1.24974 1.19441 1.10651 1.22073 0.96811 1.00619 0.90096 1.19647 0.87961 0.84485 0.84942 1.90504 1.64633 1.59068 1.31988 1.41852 1.13098 1.56945 1.08173 1.19646 0.88031 1.39415 0.95886 0.87956 1.25261 1.00256 0.97636 0.94733 1.69599 1.37766 1.47883 0.99045 0.85912 0.81917 0.79255 0.77099 1.19940 1.20978 1.19874 1.23919 1.00794 0.92916 0.94676 1.22846 0.89025 0.87567 0.97086 0.90104 1.86213 1.36117 1.28835 1.86336 0.91734 0.87798 0.91694 0.74165 0.87785 0.87759 0.74862 0.88978 0.93215 0.89068 0.93002 0.77509 0.91802 0.93025 0.87900 0.76247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.56 101.05 1.07 1.40 16 2 O -0.37 -3.35 10.62 -40.33 -0.43 -3.77 16 3 C 0.65 6.80 8.75 54.06 0.47 7.27 16 4 O -0.57 -7.32 16.13 -19.28 -0.31 -7.63 16 5 N -0.70 -6.31 5.53 -66.47 -0.37 -6.68 16 6 C 0.12 0.92 6.15 -5.19 -0.03 0.89 16 7 C 0.51 4.86 7.89 -10.98 -0.09 4.77 16 8 O -0.54 -6.80 15.36 5.56 0.09 -6.71 16 9 N -0.70 -6.25 4.90 -52.46 -0.26 -6.51 16 10 C 0.15 1.66 3.36 -66.55 -0.22 1.44 16 11 H 0.11 1.28 7.64 -51.93 -0.40 0.88 16 12 C 0.02 0.24 6.17 -2.18 -0.01 0.23 16 13 N -0.48 -7.46 4.97 -231.41 -1.15 -8.61 16 14 C 0.04 0.62 5.32 -4.98 -0.03 0.59 16 15 C 0.44 10.21 7.63 -10.98 -0.08 10.13 16 16 O -0.58 -15.15 14.81 5.55 0.08 -15.06 16 17 N -0.56 -14.03 5.29 -10.96 -0.06 -14.08 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 22 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.01 0.07 5.66 -2.19 -0.01 0.06 16 27 C 0.09 0.98 4.42 -25.35 -0.11 0.86 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 O -0.57 -4.55 11.50 -35.23 -0.41 -4.96 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.42 3.75 7.55 -40.82 -0.31 3.44 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.41 3.11 7.18 -40.82 -0.29 2.82 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 39 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 40 H 0.05 0.81 7.77 -51.93 -0.40 0.41 16 41 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.05 0.68 7.69 -51.93 -0.40 0.29 16 44 H 0.10 1.66 7.25 -51.93 -0.38 1.28 16 45 H 0.39 1.84 9.12 45.56 0.42 2.26 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -35.12 384.67 -5.99 -41.11 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.38 Total: 15.12 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 0.71 Total: 19.76 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -1.11 Total: -59.41 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.98 Total: -38.14 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.12 -5.99 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219271241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.307 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds