Wall clock time and date at job start Wed Apr 1 2020 02:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34642 * 116.99404 * 2 1 4 4 O 1.21510 * 120.00577 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99584 * 179.97438 * 3 2 1 6 6 C 1.46504 * 119.99546 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.46631 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00375 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99704 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99948 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.28786 * 35.67454 * 10 9 7 12 12 C 1.54379 * 110.32244 * 273.54967 * 10 9 7 13 13 N 1.48562 * 104.59081 * 217.14895 * 12 10 9 14 14 C 1.46904 * 110.99976 * 159.04035 * 13 12 10 15 15 C 1.50697 * 109.46892 * 169.99611 * 14 13 12 16 16 O 1.21291 * 120.00763 * 359.72740 * 15 14 13 17 17 N 1.34784 * 119.99774 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99968 * 179.72830 * 17 15 14 19 19 H 1.08005 * 120.00127 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00107 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99828 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00407 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46940 * 60.00199 * 22 20 18 24 24 H 1.48496 * 109.47341 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47121 * 300.00728 * 22 20 18 26 26 C 1.48557 * 104.22215 * 39.48172 * 13 12 10 27 27 C 1.54257 * 110.40909 * 157.86030 * 10 9 7 28 28 H 1.09004 * 110.32078 * 237.94237 * 27 10 9 29 29 O 1.42897 * 110.32366 * 0.04223 * 27 10 9 30 30 H 1.08997 * 109.47247 * 60.00161 * 1 2 3 31 31 H 1.08996 * 109.46470 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47147 * 300.00162 * 1 2 3 33 33 H 0.96993 * 120.00151 * 0.02562 * 5 3 2 34 34 H 1.08991 * 109.47164 * 60.00683 * 6 5 3 35 35 H 1.08994 * 109.47132 * 299.99889 * 6 5 3 36 36 H 0.96993 * 120.00215 * 0.02562 * 9 7 6 37 37 H 1.09003 * 110.41445 * 98.37350 * 12 10 9 38 38 H 1.08999 * 110.41005 * 335.92466 * 12 10 9 39 39 H 1.09001 * 109.46900 * 50.00271 * 14 13 12 40 40 H 1.08993 * 109.47169 * 289.99992 * 14 13 12 41 41 H 0.97005 * 119.99846 * 359.72750 * 17 15 14 42 42 H 0.96990 * 120.00373 * 180.02562 * 21 20 18 43 43 H 1.09004 * 110.41098 * 79.29869 * 26 13 12 44 44 H 1.09005 * 110.40948 * 201.73925 * 26 13 12 45 45 H 0.96704 * 113.99716 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5757 0.0000 7 6 5.5682 2.3783 0.0001 8 8 6.0318 1.2576 0.0001 9 7 6.3891 3.4473 0.0001 10 6 7.8415 3.2554 0.0008 11 1 8.1077 2.3824 -0.5951 12 6 8.3607 3.0967 1.4460 13 7 9.6688 3.8010 1.4532 14 6 10.0586 4.1735 2.8197 15 6 11.4853 4.6589 2.8203 16 8 12.1170 4.6868 1.7853 17 7 12.0610 5.0575 3.9720 18 6 13.3606 5.4939 3.9735 19 1 13.9233 5.5178 3.0520 20 6 13.9540 5.9053 5.1608 21 7 13.2695 5.8756 6.2822 22 14 15.7250 6.4992 5.1631 23 1 15.8525 7.6792 4.2706 24 1 16.1184 6.8776 6.5441 25 1 16.6122 5.4123 4.6763 26 6 9.4383 5.0075 0.6177 27 6 8.5504 4.5124 -0.5441 28 1 9.1631 4.2567 -1.4086 29 8 7.5902 5.5108 -0.8952 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.9374 0.4569 0.0005 34 1 3.7809 3.1332 0.8894 35 1 3.7816 3.1321 -0.8905 36 1 6.0184 4.3435 0.0005 37 1 8.4952 2.0425 1.6881 38 1 7.6731 3.5648 2.1505 39 1 9.9701 3.3049 3.4723 40 1 9.4046 4.9672 3.1805 41 1 11.5557 5.0356 4.7998 42 1 13.6834 6.1631 7.1108 43 1 8.9194 5.7746 1.1926 44 1 10.3842 5.3919 0.2360 45 1 7.9788 6.3245 -1.2446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219271241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:35 Heat of formation + Delta-G solvation = -210.315857 kcal Electronic energy + Delta-G solvation = -29635.830435 eV Core-core repulsion = 25073.918707 eV Total energy + Delta-G solvation = -4561.911728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74679 -41.25004 -40.34235 -39.41733 -37.71392 -36.87185 -35.94754 -35.76314 -35.31852 -33.28412 -31.79006 -29.97743 -28.98229 -28.18854 -27.34406 -25.92794 -22.93728 -22.62630 -21.95877 -21.53334 -20.99111 -20.28088 -19.88113 -18.58582 -18.13544 -17.89415 -17.79549 -17.73066 -16.95803 -16.69181 -16.58101 -16.45125 -16.22808 -15.88836 -15.69864 -15.15984 -15.06411 -14.92051 -14.70719 -14.47577 -14.16865 -14.05424 -13.80237 -13.58135 -13.42241 -13.18029 -12.95626 -12.95213 -12.58687 -12.50190 -12.42297 -12.12732 -12.05249 -11.87715 -11.80995 -11.47358 -11.18350 -11.03590 -10.47547 -10.37252 -10.18140 -10.00508 -9.46269 -8.45842 -5.94594 0.99201 1.40191 1.41251 1.42423 1.53004 1.64012 1.96330 2.05724 2.29356 2.74792 3.12464 3.20518 3.24023 3.33354 3.47527 3.62740 3.77355 4.05746 4.19300 4.25384 4.27870 4.28344 4.34442 4.36303 4.39171 4.42650 4.50324 4.64863 4.70459 4.83104 4.88688 4.96512 4.99569 5.24814 5.31857 5.41220 5.74171 5.80043 6.04103 6.22386 6.43030 6.60826 6.75200 7.10403 7.13423 7.16391 7.56807 8.12353 8.71293 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024150 B = 0.001716 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.126886 B =16315.306638 C =16932.719080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.650 3.350 4 O -0.600 6.600 5 N -0.695 5.695 6 C 0.123 3.877 7 C 0.514 3.486 8 O -0.568 6.568 9 N -0.690 5.690 10 C 0.157 3.843 11 H 0.099 0.901 12 C 0.025 3.975 13 N -0.501 5.501 14 C 0.048 3.952 15 C 0.443 3.557 16 O -0.614 6.614 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.007 3.993 27 C 0.113 3.887 28 H 0.086 0.914 29 O -0.563 6.563 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.063 0.937 33 H 0.420 0.580 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.424 0.576 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.910 -5.507 -11.927 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.290 6.290 3 C 0.403 3.597 4 O -0.492 6.492 5 N -0.357 5.357 6 C -0.003 4.003 7 C 0.300 3.700 8 O -0.447 6.447 9 N -0.343 5.343 10 C 0.050 3.950 11 H 0.117 0.883 12 C -0.104 4.104 13 N -0.227 5.227 14 C -0.083 4.083 15 C 0.230 3.770 16 O -0.500 6.500 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.121 4.121 27 C 0.052 3.948 28 H 0.103 0.897 29 O -0.371 6.371 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.259 0.741 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.263 0.737 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -23.474 -6.524 -12.430 27.351 hybrid contribution 0.674 1.310 0.973 1.765 sum -22.800 -5.214 -11.457 26.044 Atomic orbital electron populations 1.23539 0.72409 1.05717 1.02830 1.86272 1.26077 1.29966 1.86645 1.18085 0.83240 0.82389 0.76028 1.90994 1.65267 1.35717 1.57197 1.44246 1.03002 1.10943 1.77525 1.21077 0.87561 0.84659 1.06988 1.20637 0.89217 0.84689 0.75448 1.90734 1.77814 1.24919 1.51264 1.45503 1.05231 1.10087 1.73524 1.21602 0.79786 0.97892 0.95702 0.88277 1.23585 0.89473 1.00411 0.96897 1.64985 1.27255 1.20638 1.09780 1.21909 0.92943 1.01678 0.91789 1.20660 0.89960 0.82639 0.83698 1.90477 1.66293 1.60048 1.33153 1.41923 1.12635 1.57686 1.08970 1.19630 0.89487 1.41525 0.95644 0.90206 1.26025 1.03976 0.97164 0.94061 1.69664 1.39171 1.47935 0.99409 0.84993 0.77115 0.78650 0.77610 1.19589 1.19614 1.19835 1.23865 1.00088 0.92525 0.95663 1.22525 0.88695 0.87700 0.95834 0.89656 1.86185 1.35362 1.29346 1.86239 0.91713 0.84767 0.91804 0.74118 0.86357 0.86196 0.73707 0.89621 0.92026 0.87526 0.90841 0.77097 0.91345 0.92459 0.90963 0.74289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 10.56 113.37 1.20 1.70 16 2 O -0.38 -6.40 10.62 -55.52 -0.59 -6.99 16 3 C 0.65 12.86 8.75 129.79 1.14 14.00 16 4 O -0.60 -14.68 16.13 19.81 0.32 -14.36 16 5 N -0.69 -11.65 5.53 -594.60 -3.29 -14.94 16 6 C 0.12 1.65 6.15 85.63 0.53 2.17 16 7 C 0.51 8.88 7.89 87.66 0.69 9.57 16 8 O -0.57 -13.81 15.36 -3.03 -0.05 -13.85 16 9 N -0.69 -10.74 4.90 -438.29 -2.15 -12.88 16 10 C 0.16 3.16 3.36 45.89 0.15 3.32 16 11 H 0.10 2.24 7.64 -2.39 -0.02 2.22 16 12 C 0.03 0.60 6.17 86.45 0.53 1.13 16 13 N -0.50 -15.33 4.97 -886.05 -4.41 -19.74 16 14 C 0.05 1.63 5.32 85.56 0.46 2.09 16 15 C 0.44 20.66 7.63 87.65 0.67 21.33 16 16 O -0.61 -33.08 14.81 -3.06 -0.05 -33.12 16 17 N -0.57 -29.09 5.29 -306.97 -1.62 -30.72 16 18 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.32 13.05 21.66 0.28 -49.03 16 22 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.01 0.19 5.66 86.45 0.49 0.68 16 27 C 0.11 2.14 4.42 31.49 0.14 2.28 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 29 O -0.56 -7.51 11.50 -148.98 -1.71 -9.22 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.42 7.11 7.55 -92.71 -0.70 6.41 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.42 5.12 7.18 -92.71 -0.67 4.46 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 1.32 7.91 -2.39 -0.02 1.30 16 39 H 0.11 3.26 8.08 -2.39 -0.02 3.24 16 40 H 0.07 2.17 7.77 -2.39 -0.02 2.15 16 41 H 0.40 19.06 7.90 -92.70 -0.73 18.33 16 42 H 0.28 13.95 8.31 -92.72 -0.77 13.18 16 43 H 0.06 1.44 7.69 -2.39 -0.02 1.42 16 44 H 0.07 2.37 7.25 -2.38 -0.02 2.36 16 45 H 0.41 2.76 9.12 -74.05 -0.68 2.08 16 Total: -1.00 -76.46 384.67 -5.65 -82.11 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -1.69 Total: 38.07 kcal Atomic # 6 Polarization: 32.89 SS G_CDS: 7.27 Total: 40.17 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -11.19 Total: -127.32 kcal Atomic # 8 Polarization: -75.47 SS G_CDS: -2.08 Total: -77.54 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -76.46 -5.65 -82.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219271241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.205 kcal (2) G-P(sol) polarization free energy of solvation -76.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds