Wall clock time and date at job start Wed Apr 1 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99530 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47410 * 300.00225 * 3 2 1 6 6 H 1.48508 * 109.47161 * 60.00143 * 3 2 1 7 7 C 1.38810 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00169 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.47469 * 125.62849 * 179.97438 * 9 7 2 11 11 C 1.54908 * 104.81383 * 204.04428 * 10 9 7 12 12 H 1.09010 * 110.99911 * 81.13765 * 11 10 9 13 13 N 1.46494 * 111.00715 * 204.95040 * 11 10 9 14 14 C 1.34783 * 120.00145 * 270.42097 * 13 11 10 15 15 O 1.21285 * 119.99597 * 359.97438 * 14 13 11 16 16 C 1.50694 * 120.00067 * 180.02562 * 14 13 11 17 17 C 1.53005 * 109.46962 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.46867 * 179.97438 * 17 16 14 19 19 N 1.30109 * 124.95055 * 304.97701 * 18 17 16 20 20 C 1.35789 * 109.64122 * 179.97438 * 19 18 17 21 21 C 1.39742 * 133.60084 * 180.02562 * 20 19 18 22 22 C 1.36605 * 119.88532 * 179.67204 * 21 20 19 23 23 C 1.38778 * 120.66733 * 0.58395 * 22 21 20 24 24 C 1.37854 * 120.45022 * 359.42380 * 23 22 21 25 25 C 1.38828 * 119.68973 * 0.27668 * 24 23 22 26 26 N 1.36034 * 124.94845 * 124.95203 * 18 17 16 27 27 H 0.97007 * 126.34634 * 0.04500 * 26 18 17 28 28 C 1.55157 * 101.61869 * 323.04823 * 11 10 9 29 29 H 1.08997 * 110.72389 * 153.84423 * 28 11 10 30 30 O 1.42903 * 110.71604 * 277.11700 * 28 11 10 31 31 C 1.47024 * 125.64952 * 359.97438 * 9 7 2 32 32 H 0.96999 * 120.00296 * 0.02562 * 1 2 3 33 33 H 1.09010 * 110.34910 * 85.22860 * 10 9 7 34 34 H 1.09002 * 110.40751 * 322.89650 * 10 9 7 35 35 H 0.97000 * 120.00078 * 90.42359 * 13 11 10 36 36 H 1.09001 * 109.47533 * 60.00386 * 16 14 13 37 37 H 1.08994 * 109.47553 * 299.99948 * 16 14 13 38 38 H 1.08996 * 109.47038 * 60.00145 * 17 16 14 39 39 H 1.08995 * 109.47261 * 299.99878 * 17 16 14 40 40 H 1.08001 * 120.05554 * 359.96954 * 21 20 19 41 41 H 1.07997 * 119.66762 * 180.30600 * 22 21 20 42 42 H 1.08002 * 119.77676 * 179.70675 * 23 22 21 43 43 H 1.08005 * 120.15403 * 180.25756 * 24 23 22 44 44 H 0.96696 * 113.99698 * 179.97438 * 30 28 11 45 45 H 1.08995 * 109.88615 * 59.58008 * 31 9 7 46 46 H 1.08995 * 110.01071 * 298.48368 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 1.9343 -3.7312 -0.0028 11 6 0.8520 -4.6558 -0.6138 12 1 0.8563 -4.5961 -1.7023 13 7 1.0294 -6.0393 -0.1659 14 6 1.8117 -6.8808 -0.8706 15 8 2.3685 -6.4926 -1.8757 16 6 1.9937 -8.3040 -0.4101 17 6 2.9211 -9.0392 -1.3800 18 6 3.1036 -10.4624 -0.9191 19 7 3.5180 -10.8159 0.2624 20 6 3.5671 -12.1705 0.3425 21 6 3.9307 -13.0636 1.3540 22 6 3.8670 -14.4095 1.1289 23 6 3.4554 -14.9028 -0.1012 24 6 3.0922 -14.0405 -1.1136 25 6 3.1447 -12.6696 -0.9011 26 7 2.8586 -11.5646 -1.6778 27 1 2.5418 -11.5727 -2.5947 28 6 -0.4483 -4.0441 -0.0285 29 1 -1.2985 -4.2513 -0.6784 30 8 -0.6880 -4.5350 1.2920 31 6 -0.1374 -2.5327 -0.0017 32 1 -0.4850 0.8400 -0.0004 33 1 2.1682 -4.0423 1.0154 34 1 2.8333 -3.7406 -0.6191 35 1 0.5838 -6.3498 0.6378 36 1 1.0256 -8.8042 -0.3842 37 1 2.4325 -8.3099 0.5876 38 1 3.8893 -8.5392 -1.4063 39 1 2.4819 -9.0334 -2.3775 40 1 4.2568 -12.6904 2.3135 41 1 4.1441 -15.0965 1.9147 42 1 3.4149 -15.9695 -0.2650 43 1 2.7686 -14.4297 -2.0677 44 1 -1.4892 -4.1826 1.7031 45 1 -0.5574 -2.0520 -0.8852 46 1 -0.5566 -2.0842 0.8989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219959717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:07 Heat of formation + Delta-G solvation = 10.376432 kcal Electronic energy + Delta-G solvation = -28639.758714 eV Core-core repulsion = 24530.558935 eV Total energy + Delta-G solvation = -4109.199778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44693 -39.74387 -38.03368 -37.64825 -34.85126 -33.97156 -33.72686 -33.33207 -31.64854 -30.31096 -29.37624 -28.43947 -27.17837 -25.48688 -24.21573 -22.71210 -22.33408 -21.13919 -20.57198 -20.21607 -19.84469 -18.19113 -17.66858 -17.40275 -16.78964 -16.75889 -15.84435 -15.52640 -15.39149 -15.21758 -14.77569 -14.63116 -14.25453 -14.04051 -14.00446 -13.49395 -13.25562 -13.14266 -12.67282 -12.55604 -12.48113 -12.35007 -12.16992 -11.91410 -11.85233 -11.40830 -11.29396 -10.98254 -10.94716 -10.85415 -10.51918 -10.45705 -10.23886 -10.10125 -9.82335 -9.70048 -9.31592 -8.71238 -8.70260 -8.63764 -8.42764 -6.87246 -5.75070 -3.07821 0.62548 1.19416 2.43547 2.52047 2.79553 3.35174 3.40008 3.45953 3.48406 3.57076 3.81664 4.24510 4.48341 4.55373 4.65555 4.67926 4.72844 4.80394 4.97994 5.07023 5.12212 5.19476 5.28677 5.32769 5.38995 5.42481 5.54724 5.63976 5.72056 5.74837 5.77023 5.87064 6.06587 6.08063 6.18861 6.20631 6.21876 6.55052 6.61412 6.67196 6.94141 6.98434 7.32629 7.44688 7.59822 7.72556 7.80536 8.06400 8.19699 8.44296 9.18061 9.78154 10.42533 11.37338 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.001727 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.661366 B =16210.429321 C =16409.931689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.131 3.869 11 C 0.138 3.862 12 H 0.103 0.897 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.547 6.547 16 C -0.130 4.130 17 C -0.026 4.026 18 C 0.293 3.707 19 N -0.488 5.488 20 C 0.049 3.951 21 C -0.064 4.064 22 C -0.130 4.130 23 C -0.105 4.105 24 C -0.112 4.112 25 C 0.043 3.957 26 N -0.598 5.598 27 H 0.423 0.577 28 C 0.067 3.933 29 H 0.060 0.940 30 O -0.567 6.567 31 C 0.154 3.846 32 H 0.252 0.748 33 H 0.026 0.974 34 H 0.044 0.956 35 H 0.408 0.592 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.379 0.621 45 H 0.055 0.945 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -28.956 -1.268 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.033 3.967 12 H 0.121 0.879 13 N -0.358 5.358 14 C 0.297 3.703 15 O -0.425 6.425 16 C -0.171 4.171 17 C -0.066 4.066 18 C 0.026 3.974 19 N -0.209 5.209 20 C -0.070 4.070 21 C -0.084 4.084 22 C -0.150 4.150 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.067 4.067 26 N -0.210 5.210 27 H 0.262 0.738 28 C 0.007 3.993 29 H 0.078 0.922 30 O -0.373 6.373 31 C 0.029 3.971 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.243 0.757 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.227 0.773 45 H 0.073 0.927 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.865 -28.228 -1.386 28.323 hybrid contribution -0.766 0.558 -0.619 1.132 sum 1.099 -27.670 -2.006 27.764 Atomic orbital electron populations 1.69921 1.04912 1.24993 1.57700 1.24792 0.95787 0.97723 1.02305 0.85995 0.78789 0.83523 0.77195 1.20437 1.21737 1.21767 1.19152 0.90613 0.82175 1.43160 0.90183 1.44296 1.01244 0.99939 1.87293 1.21847 0.94589 0.85717 0.97454 1.22342 0.95364 0.79699 0.99318 0.87908 1.45778 1.49157 1.11410 1.29421 1.20492 0.78753 0.87362 0.83728 1.90717 1.47756 1.78208 1.25810 1.21523 1.01382 0.92587 1.01656 1.19921 1.02831 0.84628 0.99197 1.23682 0.96141 0.90603 0.86939 1.70441 1.21530 1.11005 1.17879 1.19139 1.03932 0.90196 0.93690 1.20068 0.98918 0.91645 0.97745 1.20659 1.01939 0.94778 0.97618 1.20885 0.99424 0.99292 0.92860 1.19963 1.04201 0.88771 1.00322 1.18911 1.05106 0.89479 0.93179 1.43125 1.57290 1.05063 1.15478 0.73797 1.23505 0.95581 0.96950 0.83229 0.92186 1.86250 1.49262 1.71558 1.30267 1.21852 0.85577 0.87746 1.01950 0.93792 0.95587 0.93726 0.75670 0.88909 0.87321 0.87384 0.88956 0.85260 0.85361 0.85331 0.86029 0.77280 0.92698 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.84 10.31 55.49 0.57 -26.27 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.47 3.40 -170.04 -0.58 -16.05 16 10 C 0.13 2.88 6.92 -2.51 -0.02 2.86 16 11 C 0.14 2.52 3.25 -65.79 -0.21 2.31 16 12 H 0.10 1.99 7.63 -51.92 -0.40 1.59 16 13 N -0.71 -10.34 5.18 -51.73 -0.27 -10.61 16 14 C 0.51 7.17 7.83 -10.99 -0.09 7.09 16 15 O -0.55 -9.60 15.67 5.55 0.09 -9.52 16 16 C -0.13 -1.31 5.64 -27.88 -0.16 -1.47 16 17 C -0.03 -0.25 5.13 -27.88 -0.14 -0.39 16 18 C 0.29 3.01 7.37 -154.82 -1.14 1.87 16 19 N -0.49 -6.13 11.21 -8.23 -0.09 -6.22 16 20 C 0.05 0.57 7.23 -84.70 -0.61 -0.04 16 21 C -0.06 -0.61 10.05 -39.61 -0.40 -1.01 16 22 C -0.13 -0.95 9.96 -39.97 -0.40 -1.34 16 23 C -0.10 -0.71 10.03 -39.52 -0.40 -1.10 16 24 C -0.11 -0.85 10.07 -39.50 -0.40 -1.25 16 25 C 0.04 0.42 7.31 -83.99 -0.61 -0.19 16 26 N -0.60 -5.02 6.23 -8.00 -0.05 -5.07 16 27 H 0.42 2.16 8.96 -40.82 -0.37 1.80 16 28 C 0.07 1.19 4.20 -24.89 -0.10 1.08 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 O -0.57 -8.87 12.14 -35.23 -0.43 -9.29 16 31 C 0.15 3.59 5.14 -3.06 -0.02 3.58 16 32 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 34 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.41 5.30 7.57 -40.82 -0.31 4.99 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.11 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.38 4.59 9.12 45.56 0.42 5.01 16 45 H 0.05 1.41 7.38 -51.93 -0.38 1.02 16 46 H 0.05 1.35 7.43 -51.93 -0.39 0.96 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -35.52 384.28 -10.55 -46.07 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.62 Total: 8.79 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -4.95 Total: 5.14 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.42 Total: -64.22 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.34 Total: -18.81 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.52 -10.55 -46.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219959717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.445 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds