Wall clock time and date at job start Wed Apr 1 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99530 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47410 * 300.00225 * 3 2 1 6 6 H 1.48508 * 109.47161 * 60.00143 * 3 2 1 7 7 C 1.38810 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00169 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.47469 * 125.62849 * 179.97438 * 9 7 2 11 11 C 1.54908 * 104.81383 * 204.04428 * 10 9 7 12 12 H 1.09010 * 110.99911 * 81.13765 * 11 10 9 13 13 N 1.46494 * 111.00715 * 204.95040 * 11 10 9 14 14 C 1.34783 * 120.00145 * 270.42097 * 13 11 10 15 15 O 1.21285 * 119.99597 * 359.97438 * 14 13 11 16 16 C 1.50694 * 120.00067 * 180.02562 * 14 13 11 17 17 C 1.53005 * 109.46962 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.46867 * 179.97438 * 17 16 14 19 19 N 1.30109 * 124.95055 * 304.97701 * 18 17 16 20 20 C 1.35789 * 109.64122 * 179.97438 * 19 18 17 21 21 C 1.39742 * 133.60084 * 180.02562 * 20 19 18 22 22 C 1.36605 * 119.88532 * 179.67204 * 21 20 19 23 23 C 1.38778 * 120.66733 * 0.58395 * 22 21 20 24 24 C 1.37854 * 120.45022 * 359.42380 * 23 22 21 25 25 C 1.38828 * 119.68973 * 0.27668 * 24 23 22 26 26 N 1.36034 * 124.94845 * 124.95203 * 18 17 16 27 27 H 0.97007 * 126.34634 * 0.04500 * 26 18 17 28 28 C 1.55157 * 101.61869 * 323.04823 * 11 10 9 29 29 H 1.08997 * 110.72389 * 153.84423 * 28 11 10 30 30 O 1.42903 * 110.71604 * 277.11700 * 28 11 10 31 31 C 1.47024 * 125.64952 * 359.97438 * 9 7 2 32 32 H 0.96999 * 120.00296 * 0.02562 * 1 2 3 33 33 H 1.09010 * 110.34910 * 85.22860 * 10 9 7 34 34 H 1.09002 * 110.40751 * 322.89650 * 10 9 7 35 35 H 0.97000 * 120.00078 * 90.42359 * 13 11 10 36 36 H 1.09001 * 109.47533 * 60.00386 * 16 14 13 37 37 H 1.08994 * 109.47553 * 299.99948 * 16 14 13 38 38 H 1.08996 * 109.47038 * 60.00145 * 17 16 14 39 39 H 1.08995 * 109.47261 * 299.99878 * 17 16 14 40 40 H 1.08001 * 120.05554 * 359.96954 * 21 20 19 41 41 H 1.07997 * 119.66762 * 180.30600 * 22 21 20 42 42 H 1.08002 * 119.77676 * 179.70675 * 23 22 21 43 43 H 1.08005 * 120.15403 * 180.25756 * 24 23 22 44 44 H 0.96696 * 113.99698 * 179.97438 * 30 28 11 45 45 H 1.08995 * 109.88615 * 59.58008 * 31 9 7 46 46 H 1.08995 * 110.01071 * 298.48368 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 1.9343 -3.7312 -0.0028 11 6 0.8520 -4.6558 -0.6138 12 1 0.8563 -4.5961 -1.7023 13 7 1.0294 -6.0393 -0.1659 14 6 1.8117 -6.8808 -0.8706 15 8 2.3685 -6.4926 -1.8757 16 6 1.9937 -8.3040 -0.4101 17 6 2.9211 -9.0392 -1.3800 18 6 3.1036 -10.4624 -0.9191 19 7 3.5180 -10.8159 0.2624 20 6 3.5671 -12.1705 0.3425 21 6 3.9307 -13.0636 1.3540 22 6 3.8670 -14.4095 1.1289 23 6 3.4554 -14.9028 -0.1012 24 6 3.0922 -14.0405 -1.1136 25 6 3.1447 -12.6696 -0.9011 26 7 2.8586 -11.5646 -1.6778 27 1 2.5418 -11.5727 -2.5947 28 6 -0.4483 -4.0441 -0.0285 29 1 -1.2985 -4.2513 -0.6784 30 8 -0.6880 -4.5350 1.2920 31 6 -0.1374 -2.5327 -0.0017 32 1 -0.4850 0.8400 -0.0004 33 1 2.1682 -4.0423 1.0154 34 1 2.8333 -3.7406 -0.6191 35 1 0.5838 -6.3498 0.6378 36 1 1.0256 -8.8042 -0.3842 37 1 2.4325 -8.3099 0.5876 38 1 3.8893 -8.5392 -1.4063 39 1 2.4819 -9.0334 -2.3775 40 1 4.2568 -12.6904 2.3135 41 1 4.1441 -15.0965 1.9147 42 1 3.4149 -15.9695 -0.2650 43 1 2.7686 -14.4297 -2.0677 44 1 -1.4892 -4.1826 1.7031 45 1 -0.5574 -2.0520 -0.8852 46 1 -0.5566 -2.0842 0.8989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219959717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:06 Heat of formation + Delta-G solvation = -16.531624 kcal Electronic energy + Delta-G solvation = -28640.925534 eV Core-core repulsion = 24530.558935 eV Total energy + Delta-G solvation = -4110.366599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.12356 -41.03290 -39.47192 -38.31196 -36.45234 -35.41328 -34.55676 -34.06426 -33.53043 -30.92505 -30.51898 -29.82572 -28.76215 -26.81283 -25.77393 -23.34878 -23.00446 -22.45243 -21.97116 -21.50006 -21.10451 -19.24230 -18.83784 -18.31528 -18.26611 -17.84736 -16.94643 -16.77242 -16.55438 -16.23822 -16.10945 -15.76565 -15.30656 -15.17449 -14.86806 -14.79226 -14.61026 -14.53528 -14.21538 -13.88461 -13.77105 -13.28003 -13.18838 -12.89179 -12.80335 -12.75126 -12.57630 -12.44789 -12.27755 -12.15344 -12.07925 -11.91927 -11.86997 -11.69360 -10.96179 -10.95687 -10.83474 -10.77528 -10.04545 -9.32833 -9.09065 -8.94851 -7.89450 -5.25026 -0.00326 0.57990 1.44983 1.45551 1.56254 1.64572 1.71598 1.86118 2.22264 2.48941 2.93133 3.09109 3.20920 3.29768 3.56243 3.66740 3.80393 3.87532 3.96130 3.99726 4.11222 4.20191 4.26357 4.28486 4.44238 4.46954 4.53283 4.54779 4.61102 4.67843 4.82996 4.84415 4.93236 5.00492 5.08460 5.16679 5.36248 5.45861 5.47366 5.52437 5.58115 5.61567 5.65306 5.98746 6.14321 6.42048 6.62898 6.88356 6.88946 7.06484 7.29685 7.70624 8.34117 9.20627 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.001727 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.661366 B =16210.429321 C =16409.931689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.622 5.622 10 C 0.131 3.869 11 C 0.152 3.848 12 H 0.093 0.907 13 N -0.698 5.698 14 C 0.513 3.487 15 O -0.582 6.582 16 C -0.116 4.116 17 C -0.020 4.020 18 C 0.289 3.711 19 N -0.524 5.524 20 C 0.011 3.989 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.102 4.102 24 C -0.116 4.116 25 C 0.031 3.969 26 N -0.587 5.587 27 H 0.437 0.563 28 C 0.092 3.908 29 H 0.093 0.907 30 O -0.564 6.564 31 C 0.159 3.841 32 H 0.249 0.751 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.419 0.581 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.147 0.853 44 H 0.398 0.602 45 H 0.025 0.975 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 -31.730 -1.469 31.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.349 5.349 10 C 0.004 3.996 11 C 0.045 3.955 12 H 0.111 0.889 13 N -0.350 5.350 14 C 0.301 3.699 15 O -0.462 6.462 16 C -0.156 4.156 17 C -0.059 4.059 18 C 0.022 3.978 19 N -0.245 5.245 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.144 4.144 23 C -0.121 4.121 24 C -0.136 4.136 25 C -0.079 4.079 26 N -0.200 5.200 27 H 0.279 0.721 28 C 0.031 3.969 29 H 0.110 0.890 30 O -0.373 6.373 31 C 0.033 3.967 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.257 0.743 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.172 0.828 42 H 0.179 0.821 43 H 0.165 0.835 44 H 0.249 0.751 45 H 0.043 0.957 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.349 -31.050 -1.576 31.119 hybrid contribution -0.569 1.320 -0.509 1.525 sum 0.779 -29.730 -2.085 29.813 Atomic orbital electron populations 1.70116 1.06023 1.25424 1.58135 1.25605 0.96770 1.00790 1.02278 0.84997 0.78011 0.79308 0.76917 1.19491 1.21565 1.21571 1.19459 0.90921 0.83716 1.43366 0.90578 1.44578 1.02545 1.00619 1.87141 1.21906 0.95291 0.85245 0.97157 1.21912 0.94040 0.81009 0.98508 0.88867 1.45648 1.49542 1.09845 1.29957 1.21136 0.77399 0.88515 0.82843 1.90709 1.48945 1.79091 1.27485 1.21446 1.02903 0.89779 1.01520 1.19847 1.02128 0.84183 0.99785 1.23612 0.96329 0.91026 0.86860 1.70357 1.22784 1.12073 1.19305 1.19549 1.05622 0.90233 0.95305 1.20296 1.00164 0.92641 0.97717 1.21028 1.00518 0.94189 0.98704 1.21344 0.97744 1.00881 0.92125 1.20361 1.03675 0.87861 1.01742 1.19214 1.05374 0.90536 0.92799 1.43028 1.56708 1.04276 1.15959 0.72095 1.23137 0.96290 0.92572 0.84855 0.88954 1.86216 1.50737 1.71008 1.29325 1.21723 0.84094 0.91664 0.99174 0.94133 0.95914 0.95309 0.74328 0.86334 0.87170 0.88746 0.87454 0.85366 0.82790 0.82104 0.83496 0.75127 0.95721 0.95659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.17 10.31 21.65 0.22 -55.95 16 2 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 3 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.25 -14.25 10.28 84.03 0.86 -13.38 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -32.89 3.40 -691.88 -2.35 -35.24 16 10 C 0.13 5.84 6.92 86.85 0.60 6.44 16 11 C 0.15 5.46 3.25 46.38 0.15 5.61 16 12 H 0.09 3.58 7.63 -2.38 -0.02 3.56 16 13 N -0.70 -19.43 5.18 -435.96 -2.26 -21.68 16 14 C 0.51 13.84 7.83 87.65 0.69 14.53 16 15 O -0.58 -20.26 15.67 -3.04 -0.05 -20.31 16 16 C -0.12 -2.16 5.64 29.85 0.17 -1.99 16 17 C -0.02 -0.36 5.13 29.85 0.15 -0.21 16 18 C 0.29 5.75 7.37 137.93 1.02 6.77 16 19 N -0.52 -13.20 11.21 -179.96 -2.02 -15.21 16 20 C 0.01 0.25 7.23 39.45 0.29 0.53 16 21 C -0.09 -1.66 10.05 22.25 0.22 -1.44 16 22 C -0.12 -1.56 9.96 22.02 0.22 -1.34 16 23 C -0.10 -1.06 10.03 22.31 0.22 -0.84 16 24 C -0.12 -1.47 10.07 22.32 0.22 -1.24 16 25 C 0.03 0.57 7.31 38.86 0.28 0.85 16 26 N -0.59 -9.10 6.23 -179.23 -1.12 -10.22 16 27 H 0.44 3.70 8.96 -92.70 -0.83 2.87 16 28 C 0.09 3.13 4.20 31.78 0.13 3.26 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 O -0.56 -16.46 12.14 -148.98 -1.81 -18.27 16 31 C 0.16 7.56 5.14 86.73 0.45 8.00 16 32 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.42 9.92 7.57 -92.71 -0.70 9.22 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 1.98 8.10 -2.39 -0.02 1.96 16 39 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 44 H 0.40 8.70 9.12 -74.06 -0.68 8.02 16 45 H 0.02 1.31 7.38 -2.39 -0.02 1.29 16 46 H 0.03 1.32 7.43 -2.39 -0.02 1.31 16 Total: -1.00 -79.69 384.28 -2.36 -82.06 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -1.16 Total: 23.90 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 6.15 Total: 22.50 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -7.52 Total: -138.30 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.86 Total: -38.58 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -79.69 -2.36 -82.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219959717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.524 kcal (2) G-P(sol) polarization free energy of solvation -79.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds