Wall clock time and date at job start Wed Apr 1 2020 03:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47127 * 272.93851 * 3 2 1 5 5 H 1.48503 * 109.47322 * 32.94429 * 3 2 1 6 6 H 1.48501 * 109.47065 * 152.94341 * 3 2 1 7 7 C 1.38811 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99481 * 339.34474 * 7 2 1 9 9 N 1.36932 * 120.00294 * 159.34435 * 7 2 1 10 10 C 1.46926 * 120.63284 * 332.63298 * 9 7 2 11 11 C 1.53187 * 108.77613 * 233.58818 * 10 9 7 12 12 C 1.53046 * 109.31013 * 305.36121 * 11 10 9 13 13 N 1.46502 * 109.45591 * 181.38737 * 12 11 10 14 14 C 1.34780 * 119.99586 * 154.97196 * 13 12 11 15 15 O 1.21283 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99974 * 179.97438 * 14 13 12 17 17 S 1.81400 * 109.47229 * 180.02562 * 16 14 13 18 18 O 1.42092 * 108.57897 * 65.51261 * 17 16 14 19 19 O 1.42096 * 108.57559 * 294.48216 * 17 16 14 20 20 C 1.81399 * 101.91926 * 179.97438 * 17 16 14 21 21 C 1.54966 * 110.92756 * 66.53958 * 20 17 16 22 22 C 1.54264 * 104.16607 * 156.29176 * 21 20 17 23 23 C 1.53880 * 106.63989 * 336.44747 * 22 21 20 24 24 C 1.54268 * 106.59537 * 359.97184 * 23 22 21 25 25 C 1.53040 * 109.52600 * 61.37397 * 12 11 10 26 26 C 1.46924 * 120.63152 * 152.60488 * 9 7 2 27 27 H 0.97010 * 119.99989 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.58698 * 113.79588 * 10 9 7 29 29 H 1.09001 * 109.69932 * 353.44119 * 10 9 7 30 30 H 1.09001 * 109.49932 * 185.41021 * 11 10 9 31 31 H 1.08998 * 109.49883 * 65.31229 * 11 10 9 32 32 H 1.09001 * 109.45953 * 301.35561 * 12 11 10 33 33 H 0.96996 * 120.00497 * 334.97175 * 13 12 11 34 34 H 1.09002 * 109.47063 * 59.99823 * 16 14 13 35 35 H 1.09001 * 109.46995 * 300.00306 * 16 14 13 36 36 H 1.08995 * 110.67749 * 303.22937 * 20 17 16 37 37 H 1.09005 * 110.47258 * 37.63822 * 21 20 17 38 38 H 1.09005 * 110.52996 * 274.97656 * 21 20 17 39 39 H 1.09002 * 110.03610 * 217.13606 * 22 21 20 40 40 H 1.09003 * 110.03087 * 95.75319 * 22 21 20 41 41 H 1.08995 * 110.03427 * 119.25454 * 23 22 21 42 42 H 1.09001 * 110.03162 * 240.64152 * 23 22 21 43 43 H 1.09000 * 110.48385 * 142.29045 * 24 23 22 44 44 H 1.09004 * 110.48831 * 264.79923 * 24 23 22 45 45 H 1.08997 * 109.49879 * 58.57984 * 25 12 11 46 46 H 1.09000 * 109.49452 * 178.67785 * 25 12 11 47 47 H 1.08995 * 109.59072 * 246.20401 * 26 9 7 48 48 H 1.09003 * 109.58847 * 6.48838 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4355 2.0823 -1.3982 5 1 1.4801 2.6340 0.7614 6 1 3.5775 1.4230 0.6369 7 6 2.0102 -1.2021 0.0005 8 1 1.5222 -2.1072 0.3309 9 7 3.3136 -1.2404 -0.4177 10 6 3.8173 -0.2596 -1.3887 11 6 4.4622 -1.0099 -2.5583 12 6 5.5289 -1.9660 -2.0196 13 7 6.1707 -2.6612 -3.1381 14 6 7.4214 -3.1449 -3.0024 15 8 8.0153 -3.0051 -1.9542 16 6 8.0815 -3.8605 -4.1527 17 16 9.7460 -4.3882 -3.6614 18 8 9.6274 -5.3610 -2.6325 19 8 10.5391 -3.2312 -3.4344 20 6 10.3383 -5.2093 -5.1666 21 6 10.5122 -4.1903 -6.3211 22 6 11.5429 -4.8534 -7.2579 23 6 12.3460 -5.8451 -6.3979 24 6 11.7761 -5.7499 -4.9676 25 6 4.8749 -2.9908 -1.0900 26 6 4.2350 -2.2629 0.0963 27 1 -0.4850 0.8401 0.0004 28 1 4.5598 0.3796 -0.9108 29 1 2.9923 0.3505 -1.7564 30 1 4.9247 -0.2948 -3.2386 31 1 3.6995 -1.5783 -3.0906 32 1 6.2780 -1.3997 -1.4661 33 1 5.6957 -2.7733 -3.9763 34 1 8.1506 -3.1877 -5.0075 35 1 7.4893 -4.7342 -4.4249 36 1 9.6610 -6.0116 -5.4592 37 1 10.8964 -3.2442 -5.9399 38 1 9.5667 -4.0372 -6.8415 39 1 12.2080 -4.0978 -7.6760 40 1 11.0307 -5.3847 -8.0602 41 1 12.2229 -6.8575 -6.7823 42 1 13.4010 -5.5711 -6.3993 43 1 11.7522 -6.7343 -4.5002 44 1 12.3663 -5.0577 -4.3670 45 1 4.1084 -3.5404 -1.6363 46 1 5.6312 -3.6858 -0.7252 47 1 5.0114 -1.7871 0.6953 48 1 3.6845 -2.9752 0.7109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228032539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:01 Heat of formation + Delta-G solvation = -121.449939 kcal Electronic energy + Delta-G solvation = -28664.163673 eV Core-core repulsion = 24652.398675 eV Total energy + Delta-G solvation = -4011.764998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21876 -39.28621 -38.89468 -38.01693 -37.04600 -36.21184 -34.19874 -32.56293 -32.01289 -30.91263 -30.02009 -29.61658 -26.76522 -24.60973 -23.68336 -22.57725 -21.80538 -21.32947 -21.15875 -19.76683 -19.06101 -18.59907 -17.96832 -17.64121 -17.20089 -17.16612 -16.68029 -16.37723 -16.06260 -15.96118 -15.38062 -15.20388 -14.99755 -14.81342 -14.59476 -14.46415 -14.30067 -13.98012 -13.87284 -13.68844 -13.46595 -13.14517 -13.06869 -12.62892 -12.61955 -12.55450 -12.31091 -12.20623 -12.13259 -12.08678 -12.05717 -11.92701 -11.85198 -11.60347 -11.49176 -11.35036 -11.26521 -11.19660 -10.72084 -10.21052 -8.99217 -8.17351 -5.49952 -1.13666 1.27811 1.33194 1.42469 1.50746 1.74431 1.87501 2.40067 2.75768 2.95149 3.04508 3.28117 3.33130 3.46182 3.50866 3.73080 3.86755 3.90851 3.99256 4.18088 4.25165 4.27844 4.34621 4.35736 4.41858 4.45498 4.50538 4.59185 4.65190 4.76217 4.80504 4.82421 4.88823 4.97306 5.02977 5.03119 5.08070 5.13288 5.21844 5.26892 5.32422 5.39266 5.46078 5.85141 6.11426 6.30870 6.88704 7.02400 7.59386 7.99966 9.02274 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.002179 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.130941 B =12848.444233 C =13088.742115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.033 4.033 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.311 1.311 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.054 0.946 9 N -0.619 5.619 10 C 0.119 3.881 11 C -0.126 4.126 12 C 0.152 3.848 13 N -0.695 5.695 14 C 0.526 3.474 15 O -0.586 6.586 16 C -0.642 4.642 17 S 2.428 3.572 18 O -0.978 6.978 19 O -0.972 6.972 20 C -0.553 4.553 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.132 4.132 26 C 0.145 3.855 27 H 0.262 0.738 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.423 0.577 34 H 0.208 0.792 35 H 0.208 0.792 36 H 0.182 0.818 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.297 -12.212 -23.301 35.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.228 4.228 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.240 1.240 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.007 4.007 11 C -0.165 4.165 12 C 0.047 3.953 13 N -0.346 5.346 14 C 0.312 3.688 15 O -0.467 6.467 16 C -0.772 4.772 17 S 2.614 3.386 18 O -0.975 6.975 19 O -0.969 6.969 20 C -0.666 4.666 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.172 4.172 26 C 0.020 3.980 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.262 0.738 34 H 0.225 0.775 35 H 0.225 0.775 36 H 0.200 0.800 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.967 -11.888 -21.698 34.446 hybrid contribution -0.765 0.765 -0.101 1.087 sum 23.202 -11.122 -21.799 33.723 Atomic orbital electron populations 1.69955 1.07288 1.27241 1.55512 1.25879 0.95840 1.00767 1.00292 0.85969 0.78448 0.80397 0.77958 1.19218 1.24039 1.19356 1.18850 0.86469 0.93652 1.38817 0.92869 1.44512 1.07760 1.34504 1.47553 1.21396 0.96984 0.92094 0.90195 1.22162 0.97433 0.98723 0.98216 1.20814 0.94041 0.92915 0.87510 1.45843 1.14557 1.56689 1.17490 1.19982 0.82439 0.78558 0.87848 1.90870 1.64877 1.59757 1.31208 1.30751 1.23650 1.14511 1.08252 1.07677 0.77276 0.75305 0.78301 1.93516 1.86311 1.62290 1.55433 1.93510 1.67394 1.50849 1.85106 1.31187 1.08440 1.12047 1.14930 1.22557 1.03242 0.96214 0.93827 1.22138 0.97301 0.98483 0.97968 1.22150 1.00083 1.01062 0.92463 1.22365 0.91067 1.02266 1.00348 1.22231 0.99442 0.97990 0.97496 1.21007 0.91819 0.90812 0.94384 0.92873 0.95264 0.92048 0.88779 0.90211 0.91316 0.73847 0.77519 0.77532 0.80013 0.90428 0.86080 0.90850 0.89443 0.89892 0.91046 0.89117 0.91793 0.91083 0.91879 0.95611 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.30 13.97 21.65 0.30 -58.99 16 2 C -0.03 -1.90 5.23 84.86 0.44 -1.46 16 3 Si 0.94 46.19 24.35 68.60 1.67 47.86 16 4 H -0.27 -11.93 6.62 99.48 0.66 -11.27 16 5 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 6 H -0.27 -12.95 6.64 99.48 0.66 -12.29 16 7 C -0.25 -14.01 10.03 84.03 0.84 -13.16 16 8 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 9 N -0.62 -28.98 2.77 -699.10 -1.94 -30.92 16 10 C 0.12 4.83 4.20 86.36 0.36 5.19 16 11 C -0.13 -3.72 5.55 30.67 0.17 -3.55 16 12 C 0.15 4.51 2.42 45.02 0.11 4.61 16 13 N -0.69 -14.65 5.08 -442.39 -2.25 -16.90 16 14 C 0.53 12.74 7.81 87.66 0.68 13.42 16 15 O -0.59 -21.29 15.29 -0.17 0.00 -21.30 16 16 C -0.64 -6.94 6.13 71.24 0.44 -6.50 16 17 S 2.43 46.41 3.57 -56.49 -0.20 46.21 16 18 O -0.98 -28.48 17.94 -125.74 -2.26 -30.73 16 19 O -0.97 -27.44 17.30 -125.76 -2.18 -29.61 16 20 C -0.55 -4.20 3.29 31.91 0.11 -4.10 16 21 C -0.12 -0.54 6.05 31.69 0.19 -0.35 16 22 C -0.12 -0.51 6.80 31.32 0.21 -0.29 16 23 C -0.12 -0.76 6.80 31.32 0.21 -0.55 16 24 C -0.12 -1.29 6.28 31.67 0.20 -1.09 16 25 C -0.13 -4.36 5.65 30.67 0.17 -4.19 16 26 C 0.15 5.89 6.52 86.36 0.56 6.45 16 27 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 28 H 0.03 1.19 7.08 -2.38 -0.02 1.18 16 29 H 0.06 2.71 4.50 -2.39 -0.01 2.70 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.36 7.58 -2.39 -0.02 2.34 16 33 H 0.42 5.18 8.60 -92.71 -0.80 4.38 16 34 H 0.21 0.18 8.07 -2.39 -0.02 0.16 16 35 H 0.21 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.18 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.08 0.59 7.51 -2.38 -0.02 0.57 16 38 H 0.12 -0.34 8.14 -2.38 -0.02 -0.35 16 39 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.88 8.05 -2.39 -0.02 0.87 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 Total: -1.00 -92.15 384.93 -2.08 -94.23 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.06 Total: 5.71 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.71 Total: -5.56 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -3.88 Total: -106.81 kcal Atomic # 8 Polarization: -77.21 SS G_CDS: -4.43 Total: -81.64 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Atomic # 16 Polarization: 46.41 SS G_CDS: -0.20 Total: 46.21 kcal Total: -92.15 -2.08 -94.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228032539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.221 kcal (2) G-P(sol) polarization free energy of solvation -92.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds