Wall clock time and date at job start Wed Apr 1 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00014 * 2 1 4 4 O 1.20827 * 120.00057 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00063 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47076 * 180.02562 * 5 3 2 7 7 H 1.09007 * 109.47449 * 305.00076 * 6 5 3 8 8 C 1.47203 * 109.47099 * 65.00259 * 6 5 3 9 9 N 4.81453 * 111.93031 * 29.93450 * 2 1 3 10 10 C 1.50704 * 109.47351 * 185.00431 * 6 5 3 11 11 C 1.38263 * 119.94565 * 119.99935 * 10 6 5 12 12 C 1.38146 * 120.05501 * 180.02562 * 11 10 6 13 13 C 1.38742 * 119.94337 * 0.02562 * 12 11 10 14 14 O 1.35894 * 120.05371 * 180.02562 * 13 12 11 15 15 C 1.42897 * 117.00394 * 355.04640 * 14 13 12 16 16 H 1.08998 * 110.88517 * 327.70924 * 15 14 13 17 17 C 1.55157 * 111.00893 * 203.82433 * 15 14 13 18 18 C 1.54321 * 102.94544 * 206.38607 * 17 15 14 19 19 N 1.47023 * 107.26925 * 22.18961 * 18 17 15 20 20 C 1.36939 * 125.64584 * 181.02167 * 19 18 17 21 21 H 1.07995 * 119.99884 * 173.48890 * 20 19 18 22 22 C 1.38809 * 119.99966 * 353.48949 * 20 19 18 23 23 N 1.31617 * 120.00228 * 167.40000 * 22 20 19 24 24 Si 1.86802 * 120.00039 * 347.39953 * 22 20 19 25 25 H 1.48499 * 109.47078 * 186.06852 * 24 22 20 26 26 H 1.48501 * 109.47092 * 66.06925 * 24 22 20 27 27 H 1.48497 * 109.47251 * 306.06911 * 24 22 20 28 28 C 1.47423 * 108.70406 * 1.29283 * 19 18 17 29 29 C 1.38729 * 119.88766 * 0.27318 * 13 12 11 30 30 C 1.38147 * 119.94599 * 359.43010 * 29 13 12 31 31 H 1.08999 * 109.47335 * 59.99523 * 1 2 3 32 32 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46685 * 299.99745 * 1 2 3 34 34 H 1.09006 * 109.47125 * 60.00451 * 5 3 2 35 35 H 1.09003 * 109.47380 * 300.00846 * 5 3 2 36 36 H 1.07993 * 119.97324 * 359.97438 * 11 10 6 37 37 H 1.07993 * 120.02901 * 180.02562 * 12 11 10 38 38 H 1.08999 * 110.71367 * 88.01945 * 17 15 14 39 39 H 1.08998 * 110.87220 * 324.82236 * 17 15 14 40 40 H 1.09003 * 109.87930 * 262.77569 * 18 17 15 41 41 H 1.08993 * 110.01210 * 141.68256 * 18 17 15 42 42 H 0.97001 * 119.99989 * 5.07452 * 23 22 20 43 43 H 1.08994 * 110.36735 * 94.47856 * 28 19 18 44 44 H 1.09002 * 110.36196 * 216.80334 * 28 19 18 45 45 H 1.07995 * 120.02889 * 179.72187 * 29 13 12 46 46 H 1.08001 * 119.97772 * 180.27439 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5382 3.2579 -0.8408 8 6 3.5763 3.3786 1.2589 9 7 3.2501 3.8703 2.2286 10 6 5.4999 2.8226 -0.1223 11 6 6.0697 3.4834 -1.1948 12 6 7.4443 3.5581 -1.3104 13 6 8.2532 2.9689 -0.3494 14 8 9.6056 3.0415 -0.4606 15 6 10.1277 3.6441 -1.6465 16 1 9.4743 3.4552 -2.4983 17 6 11.5707 3.1506 -1.9322 18 6 12.1829 4.3182 -2.7343 19 7 11.3997 5.5220 -2.4194 20 6 11.6089 6.7698 -2.9433 21 1 10.9141 7.5686 -2.7297 22 6 12.7139 7.0080 -3.7490 23 7 12.7897 8.1191 -4.4504 24 14 14.0933 5.7515 -3.8378 25 1 15.2131 6.3019 -4.6430 26 1 13.5900 4.5081 -4.4747 27 1 14.5734 5.4458 -2.4662 28 6 10.3562 5.1647 -1.4413 29 6 7.6789 2.3012 0.7225 30 6 6.3038 2.2345 0.8369 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.9564 0.7807 -0.8892 35 1 3.9558 0.7809 0.8908 36 1 5.4397 3.9407 -1.9433 37 1 7.8889 4.0746 -2.1481 38 1 11.5552 2.2388 -2.5292 39 1 12.1181 2.9923 -1.0030 40 1 12.1233 4.1060 -3.8018 41 1 13.2228 4.4659 -2.4434 42 1 12.1105 8.8042 -4.3487 43 1 10.7020 5.3653 -0.4273 44 1 9.4390 5.7168 -1.6464 45 1 8.3064 1.8379 1.4695 46 1 5.8563 1.7186 1.6735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231002118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:31 Heat of formation + Delta-G solvation = -51.476619 kcal Electronic energy + Delta-G solvation = -28733.263454 eV Core-core repulsion = 24589.088776 eV Total energy + Delta-G solvation = -4144.174679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74108 -41.31337 -39.84611 -38.53442 -37.62657 -37.23316 -34.90339 -34.44995 -32.12680 -31.51791 -30.55883 -29.83210 -28.56532 -26.48444 -25.78776 -24.16179 -22.87657 -22.63450 -22.06316 -21.64218 -19.67175 -19.44271 -18.93907 -18.65791 -17.78362 -17.43873 -17.20198 -16.80771 -16.56872 -16.07798 -15.96860 -15.47285 -15.43242 -15.26422 -14.89810 -14.63127 -14.40877 -14.33649 -14.27764 -14.06741 -13.97909 -13.80103 -13.72849 -13.27380 -13.11152 -13.04886 -12.91960 -12.70426 -12.54974 -12.43832 -12.25198 -11.81973 -11.78328 -11.66890 -11.55654 -11.53795 -11.35131 -11.02755 -10.76851 -9.94260 -9.18248 -9.12037 -8.64933 -5.50989 0.30362 0.41647 1.15818 1.39770 1.51774 1.61756 1.72052 1.74446 1.83746 2.08990 2.54179 2.62736 3.00869 3.15664 3.30070 3.51602 3.53927 3.66693 3.74967 3.85969 3.89485 3.99987 4.10284 4.18051 4.24841 4.31785 4.33451 4.37076 4.40351 4.51741 4.63896 4.65126 4.70372 4.74250 4.79130 4.83823 4.87516 4.94398 5.10277 5.13438 5.29488 5.39452 5.45073 5.46817 5.54136 5.80457 6.05107 6.44401 6.52694 6.68280 6.78920 7.38267 8.02650 8.85990 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023538 B = 0.001918 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.266719 B =14596.673591 C =14837.229523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.456 3.544 4 O -0.540 6.540 5 C -0.100 4.100 6 C 0.077 3.923 7 H 0.145 0.855 8 C 0.235 3.765 9 N -0.483 5.483 10 C -0.128 4.128 11 C -0.053 4.053 12 C -0.220 4.220 13 C 0.122 3.878 14 O -0.309 6.309 15 C 0.084 3.916 16 H 0.102 0.898 17 C -0.109 4.109 18 C 0.084 3.916 19 N -0.631 5.631 20 C -0.314 4.314 21 H 0.044 0.956 22 C -0.085 4.085 23 N -0.964 5.964 24 Si 1.116 2.884 25 H -0.313 1.313 26 H -0.240 1.240 27 H -0.283 1.283 28 C 0.116 3.884 29 C -0.157 4.157 30 C -0.061 4.061 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.054 0.946 34 H 0.168 0.832 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.245 0.755 43 H 0.025 0.975 44 H 0.041 0.959 45 H 0.142 0.858 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 -25.416 7.648 33.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.301 3.699 4 O -0.430 6.430 5 C -0.138 4.138 6 C 0.056 3.944 7 H 0.163 0.837 8 C -0.082 4.082 9 N -0.159 5.159 10 C -0.129 4.129 11 C -0.071 4.071 12 C -0.238 4.238 13 C 0.077 3.923 14 O -0.222 6.222 15 C 0.027 3.973 16 H 0.119 0.881 17 C -0.146 4.146 18 C -0.040 4.040 19 N -0.360 5.360 20 C -0.442 4.442 21 H 0.062 0.938 22 C -0.277 4.277 23 N -0.608 5.608 24 Si 0.944 3.056 25 H -0.243 1.243 26 H -0.165 1.165 27 H -0.211 1.211 28 C -0.010 4.010 29 C -0.175 4.175 30 C -0.079 4.079 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.073 0.927 34 H 0.185 0.815 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.160 0.840 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.784 -24.732 8.486 32.789 hybrid contribution -1.644 1.779 0.381 2.452 sum -21.428 -22.953 8.866 32.628 Atomic orbital electron populations 1.23513 0.75083 1.05609 1.02283 1.86496 1.24672 1.32758 1.83636 1.24243 0.93109 0.81199 0.71326 1.90732 1.68191 1.37377 1.46674 1.21637 0.86018 0.95364 1.10785 1.17585 0.92403 0.94980 0.89446 0.83723 1.29375 0.91533 0.92957 0.94384 1.81180 1.10674 1.10099 1.13927 1.19092 0.92047 1.04110 0.97655 1.21057 0.93557 0.95280 0.97241 1.21450 0.95332 1.05799 1.01267 1.19479 0.82298 0.95063 0.95460 1.86072 1.18996 1.75609 1.41505 1.23546 0.96107 0.91350 0.86336 0.88069 1.22628 0.92739 0.97780 1.01454 1.22391 0.95642 0.86668 0.99284 1.44717 1.36538 1.05067 1.49674 1.20058 1.08329 0.87278 1.28546 0.93762 1.27253 1.01755 1.03374 0.95306 1.71029 1.39458 1.09660 1.40666 0.83348 0.72751 0.73759 0.75772 1.24266 1.16471 1.21063 1.22087 0.91861 0.94687 0.92382 1.20592 0.95442 1.03215 0.98272 1.21037 0.91829 0.96957 0.98040 0.91749 0.85141 0.92749 0.81469 0.84451 0.82933 0.85627 0.86577 0.89197 0.92738 0.94346 0.94542 0.95745 0.94023 0.84013 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.42 16 2 O -0.36 -3.97 10.57 -51.46 -0.54 -4.51 16 3 C 0.46 5.65 7.70 71.24 0.55 6.20 16 4 O -0.54 -10.71 14.73 21.96 0.32 -10.38 16 5 C -0.10 -0.53 5.00 29.85 0.15 -0.38 16 6 C 0.08 0.80 2.10 -13.35 -0.03 0.77 16 7 H 0.15 1.17 7.69 -2.38 -0.02 1.15 16 8 C 0.23 4.55 12.80 89.45 1.14 5.69 16 9 N -0.48 -12.84 18.53 20.00 0.37 -12.47 16 10 C -0.13 -1.58 4.76 -19.85 -0.09 -1.67 16 11 C -0.05 -0.80 9.66 22.25 0.22 -0.59 16 12 C -0.22 -4.62 8.96 22.37 0.20 -4.42 16 13 C 0.12 2.79 6.68 22.51 0.15 2.94 16 14 O -0.31 -8.33 9.95 -92.36 -0.92 -9.25 16 15 C 0.08 2.46 2.82 32.06 0.09 2.55 16 16 H 0.10 2.71 6.20 -2.39 -0.01 2.70 16 17 C -0.11 -3.07 6.68 31.78 0.21 -2.86 16 18 C 0.08 3.28 4.65 86.73 0.40 3.69 16 19 N -0.63 -30.10 3.36 -691.56 -2.32 -32.42 16 20 C -0.31 -18.26 10.60 84.03 0.89 -17.37 16 21 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 22 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 23 N -0.96 -62.19 13.70 21.65 0.30 -61.89 16 24 Si 1.12 52.49 24.50 68.60 1.68 54.17 16 25 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 26 H -0.24 -9.55 5.45 99.48 0.54 -9.01 16 27 H -0.28 -12.50 6.47 99.48 0.64 -11.85 16 28 C 0.12 4.54 6.89 86.93 0.60 5.14 16 29 C -0.16 -2.77 9.99 22.37 0.22 -2.55 16 30 C -0.06 -0.79 8.85 22.26 0.20 -0.59 16 31 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 32 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.05 0.54 8.13 -2.38 -0.02 0.52 16 34 H 0.17 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.14 0.26 7.56 -2.39 -0.02 0.25 16 36 H 0.15 1.56 7.94 -2.91 -0.02 1.54 16 37 H 0.13 2.92 5.71 -2.91 -0.02 2.90 16 38 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.05 2.15 6.14 -2.39 -0.01 2.13 16 41 H 0.04 1.58 3.97 -2.39 -0.01 1.57 16 42 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 43 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.04 1.66 7.87 -2.39 -0.02 1.64 16 45 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 46 H 0.15 1.22 7.62 -2.91 -0.02 1.19 16 Total: -1.00 -82.89 381.07 6.20 -76.69 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.74 Total: 6.68 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 6.57 Total: -6.61 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -1.66 Total: -106.78 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.14 Total: -24.15 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 1.68 Total: 54.17 kcal Total: -82.89 6.20 -76.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231002118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.213 kcal (2) G-P(sol) polarization free energy of solvation -82.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds