Wall clock time and date at job start Wed Apr 1 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99512 * 2 1 4 4 C 1.53002 * 109.46643 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47162 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47153 * 179.97438 * 5 4 3 7 7 C 1.34728 * 125.87193 * 125.00690 * 6 5 4 8 8 C 1.36560 * 107.60543 * 179.97438 * 7 6 5 9 9 C 1.48311 * 126.24716 * 179.97438 * 8 7 6 10 10 C 1.39736 * 119.54130 * 0.02562 * 9 8 7 11 11 C 1.37773 * 121.15897 * 180.02562 * 10 9 8 12 12 C 1.39550 * 120.19092 * 0.02713 * 11 10 9 13 13 C 1.47084 * 120.45417 * 179.97438 * 12 11 10 14 14 O 1.21555 * 120.00228 * 181.55145 * 13 12 11 15 15 O 1.34841 * 119.99772 * 1.55471 * 13 12 11 16 16 C 1.45195 * 116.99981 * 179.97438 * 15 13 12 17 17 C 1.46516 * 119.10115 * 359.97438 * 12 11 10 18 18 C 1.40926 * 120.55171 * 179.97438 * 17 12 11 19 19 H 1.08003 * 119.99940 * 325.45918 * 18 17 12 20 20 C 1.40269 * 119.99946 * 145.73231 * 18 17 12 21 21 N 1.30624 * 120.00106 * 352.03901 * 20 18 17 22 22 Si 1.86806 * 119.99943 * 172.04352 * 20 18 17 23 23 H 1.48499 * 109.46989 * 90.00115 * 22 20 18 24 24 H 1.48497 * 109.46983 * 210.00116 * 22 20 18 25 25 H 1.48501 * 109.46914 * 330.00032 * 22 20 18 26 26 C 1.38750 * 119.54568 * 180.27844 * 9 8 7 27 27 C 1.40924 * 107.50807 * 0.22506 * 8 7 6 28 28 N 1.30639 * 108.07921 * 359.61420 * 27 8 7 29 29 H 1.08999 * 109.47403 * 299.99816 * 1 2 3 30 30 H 1.08996 * 109.47146 * 60.00346 * 1 2 3 31 31 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47569 * 59.99779 * 3 2 1 33 33 H 1.08995 * 109.46906 * 299.99434 * 3 2 1 34 34 H 1.09000 * 109.47046 * 59.99792 * 4 3 2 35 35 H 1.08994 * 109.47298 * 300.00093 * 4 3 2 36 36 H 1.09000 * 109.46821 * 60.00253 * 5 4 3 37 37 H 1.08994 * 109.47579 * 300.00519 * 5 4 3 38 38 H 1.08000 * 126.20022 * 359.97438 * 7 6 5 39 39 H 1.07999 * 119.42238 * 0.04535 * 10 9 8 40 40 H 1.08001 * 119.90891 * 179.97438 * 11 10 9 41 41 H 1.09004 * 109.47261 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.47093 * 299.99514 * 16 15 13 43 43 H 1.08993 * 109.47368 * 59.99742 * 16 15 13 44 44 H 0.97007 * 119.99968 * 179.97438 * 21 20 18 45 45 H 1.08003 * 120.13088 * 359.97438 * 26 9 8 46 46 H 1.08009 * 125.95981 * 179.76734 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6181 2.4667 0.0012 7 6 6.4552 3.0280 -0.8928 8 6 7.7283 2.6816 -0.5406 9 6 8.9717 3.0778 -1.2453 10 6 8.8913 3.8828 -2.3847 11 6 10.0248 4.2701 -3.0654 12 6 11.2833 3.8599 -2.6234 13 6 12.4972 4.2696 -3.3460 14 8 13.5872 3.8845 -2.9704 15 8 12.4008 5.0723 -4.4251 16 6 13.6399 5.4366 -5.0884 17 6 11.3791 3.0157 -1.4298 18 6 12.6344 2.5835 -0.9570 19 1 13.4271 2.3606 -1.6558 20 6 12.8524 2.4373 0.4209 21 7 11.9504 2.8474 1.2721 22 14 14.4329 1.6562 1.0388 23 1 15.4599 2.7097 1.2400 24 1 14.1728 0.9658 2.3276 25 1 14.9221 0.6722 0.0400 26 6 10.1984 2.6397 -0.7673 27 6 7.6447 1.8742 0.6114 28 7 6.3839 1.7545 0.9320 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8465 0.8899 33 1 1.6885 1.8463 -0.8900 34 1 3.8573 0.6436 -0.8891 35 1 3.8566 0.6440 0.8908 36 1 3.8357 3.1238 0.8896 37 1 3.8364 3.1228 -0.8903 38 1 6.1710 3.6409 -1.7354 39 1 7.9236 4.2073 -2.7377 40 1 9.9391 4.8922 -3.9440 41 1 13.4207 6.0835 -5.9380 42 1 14.2857 5.9650 -4.3871 43 1 14.1435 4.5354 -5.4379 44 1 12.1010 2.7460 2.2250 45 1 10.2456 2.0148 0.1124 46 1 8.4778 1.4333 1.1388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242489707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:41 Heat of formation + Delta-G solvation = -40.387742 kcal Electronic energy + Delta-G solvation = -28578.046430 eV Core-core repulsion = 24434.352601 eV Total energy + Delta-G solvation = -4143.693829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.80870 -39.16293 -38.33450 -37.11735 -35.24209 -34.78957 -33.81578 -31.45180 -30.90211 -29.73261 -28.44974 -27.37136 -26.74506 -25.47788 -25.10270 -22.65880 -22.35638 -21.33852 -20.47184 -19.72909 -19.16863 -17.47419 -16.99665 -16.60422 -16.48330 -16.31324 -15.71993 -15.43077 -15.32201 -15.19225 -14.89857 -14.27695 -13.94355 -13.86770 -13.49624 -13.27499 -12.75788 -12.65513 -12.54324 -12.44819 -12.32326 -12.21815 -12.07651 -11.63066 -11.47723 -11.45255 -11.32264 -11.14205 -11.07690 -10.90683 -10.62284 -10.41590 -10.09692 -10.04338 -9.92464 -9.62948 -9.39843 -9.09161 -8.83167 -8.65351 -7.44287 -6.99986 -6.79511 -4.51056 1.80138 2.36501 2.65380 2.81643 3.05737 3.11225 3.13164 3.38443 3.43013 3.79585 3.89658 4.13970 4.44946 4.63742 4.67557 4.76791 4.86286 4.96291 4.99834 5.04727 5.12810 5.19973 5.29781 5.37887 5.54164 5.62146 5.70460 5.74294 5.84256 5.87003 5.92335 6.06403 6.18815 6.29076 6.34020 6.49776 6.77311 6.89358 7.00175 7.06709 7.09989 7.29258 7.34825 7.51360 7.63004 7.89910 7.91380 8.04631 8.15646 8.54627 8.67950 8.77294 9.13759 10.01983 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.002360 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.101638 B =11859.707967 C =13725.470073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.132 4.132 5 C 0.144 3.856 6 N -0.381 5.381 7 C 0.050 3.950 8 C -0.168 4.168 9 C 0.025 3.975 10 C -0.246 4.246 11 C -0.027 4.027 12 C -0.264 4.264 13 C 0.503 3.497 14 O -0.522 6.522 15 O -0.375 6.375 16 C 0.041 3.959 17 C 0.153 3.847 18 C -0.409 4.409 19 H 0.108 0.892 20 C 0.069 3.931 21 N -0.779 5.779 22 Si 0.919 3.081 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.258 1.258 26 C -0.143 4.143 27 C 0.069 3.931 28 N -0.305 5.305 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.172 0.828 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.286 0.714 45 H 0.124 0.876 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 0.183 -2.523 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.171 4.171 5 C 0.022 3.978 6 N -0.163 5.163 7 C -0.095 4.095 8 C -0.179 4.179 9 C 0.023 3.977 10 C -0.265 4.265 11 C -0.045 4.045 12 C -0.267 4.267 13 C 0.354 3.646 14 O -0.414 6.414 15 O -0.294 6.294 16 C -0.054 4.054 17 C 0.149 3.851 18 C -0.436 4.436 19 H 0.125 0.875 20 C -0.151 4.151 21 N -0.403 5.403 22 Si 0.743 3.257 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.181 1.181 26 C -0.163 4.163 27 C -0.118 4.118 28 N -0.125 5.125 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.189 0.811 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.141 0.859 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -16.418 -0.551 -1.347 16.483 hybrid contribution 1.160 0.550 -0.299 1.318 sum -15.259 -0.001 -1.645 15.347 Atomic orbital electron populations 1.22754 0.80862 1.02896 0.99987 1.87901 1.19810 1.27792 1.95420 1.22413 0.93484 0.84955 1.00374 1.21768 0.92939 0.97073 1.05290 1.21384 0.75392 0.97441 1.03593 1.48245 1.05692 1.40531 1.21835 1.22484 0.90189 1.00580 0.96209 1.19263 0.92815 1.06135 0.99665 1.17896 0.90168 0.96123 0.93540 1.20092 0.96458 1.09643 1.00345 1.20686 0.91821 0.95377 0.96656 1.19744 0.89038 1.12712 1.05178 1.21305 0.90235 0.75472 0.77565 1.90715 1.29887 1.54916 1.65840 1.86590 1.35420 1.64313 1.43055 1.22953 0.85998 1.00017 0.96397 1.18358 0.93275 0.85944 0.87486 1.20270 0.98594 1.32787 0.91993 0.87451 1.26181 0.98844 0.93141 0.96981 1.69710 1.33872 1.32616 1.04152 0.86107 0.81103 0.80016 0.78440 1.19211 1.20046 1.18137 1.21253 0.89723 1.03602 1.01684 1.24088 0.94103 0.97625 0.95990 1.77125 1.03716 1.17998 1.13690 0.94008 0.94015 0.89538 0.92950 0.93054 0.90410 0.89419 0.89996 0.88785 0.81108 0.89029 0.87894 0.89526 0.92832 0.92874 0.90324 0.85858 0.79744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.96 10.70 -35.23 -0.38 -4.33 16 3 C 0.07 0.53 5.94 37.16 0.22 0.75 16 4 C -0.13 -1.33 5.76 -26.73 -0.15 -1.48 16 5 C 0.14 1.41 6.50 -4.04 -0.03 1.38 16 6 N -0.38 -5.56 3.67 -61.10 -0.22 -5.79 16 7 C 0.05 0.78 10.80 -16.89 -0.18 0.60 16 8 C -0.17 -3.19 6.03 -105.34 -0.64 -3.82 16 9 C 0.02 0.54 5.86 -105.00 -0.62 -0.08 16 10 C -0.25 -5.08 9.50 -39.19 -0.37 -5.45 16 11 C -0.03 -0.59 9.60 -39.26 -0.38 -0.96 16 12 C -0.26 -6.52 6.07 -102.49 -0.62 -7.15 16 13 C 0.50 12.13 7.87 34.32 0.27 12.40 16 14 O -0.52 -13.62 13.50 -19.31 -0.26 -13.88 16 15 O -0.38 -7.68 9.83 -40.88 -0.40 -8.08 16 16 C 0.04 0.65 10.57 101.05 1.07 1.71 16 17 C 0.15 4.01 5.64 -104.69 -0.59 3.42 16 18 C -0.41 -10.85 7.87 -37.80 -0.30 -11.15 16 19 H 0.11 2.95 5.89 -52.48 -0.31 2.64 16 20 C 0.07 1.69 5.28 -17.30 -0.09 1.59 16 21 N -0.78 -19.15 11.12 55.56 0.62 -18.53 16 22 Si 0.92 18.91 29.57 -169.99 -5.03 13.88 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.14 -3.47 8.15 -38.53 -0.31 -3.79 16 27 C 0.07 1.27 11.39 -17.04 -0.19 1.07 16 28 N -0.30 -5.30 12.37 30.82 0.38 -4.91 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.17 2.13 7.22 -52.49 -0.38 1.75 16 39 H 0.09 1.60 6.90 -52.49 -0.36 1.24 16 40 H 0.10 2.01 7.61 -52.49 -0.40 1.61 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 45 H 0.12 3.00 5.51 -52.48 -0.29 2.71 16 46 H 0.19 3.29 7.30 -52.48 -0.38 2.90 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -31.50 392.26 -7.51 -39.01 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.32 Total: 6.37 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.80 Total: -9.63 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.78 Total: -29.23 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.04 Total: -26.30 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.50 -7.51 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242489707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.383 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds