Wall clock time and date at job start Wed Apr 1 2020 02:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99512 * 2 1 4 4 C 1.53002 * 109.46643 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47162 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47153 * 179.97438 * 5 4 3 7 7 C 1.34728 * 125.87193 * 125.00690 * 6 5 4 8 8 C 1.36560 * 107.60543 * 179.97438 * 7 6 5 9 9 C 1.48311 * 126.24716 * 179.97438 * 8 7 6 10 10 C 1.39736 * 119.54130 * 0.02562 * 9 8 7 11 11 C 1.37773 * 121.15897 * 180.02562 * 10 9 8 12 12 C 1.39550 * 120.19092 * 0.02713 * 11 10 9 13 13 C 1.47084 * 120.45417 * 179.97438 * 12 11 10 14 14 O 1.21555 * 120.00228 * 181.55145 * 13 12 11 15 15 O 1.34841 * 119.99772 * 1.55471 * 13 12 11 16 16 C 1.45195 * 116.99981 * 179.97438 * 15 13 12 17 17 C 1.46516 * 119.10115 * 359.97438 * 12 11 10 18 18 C 1.40926 * 120.55171 * 179.97438 * 17 12 11 19 19 H 1.08003 * 119.99940 * 325.45918 * 18 17 12 20 20 C 1.40269 * 119.99946 * 145.73231 * 18 17 12 21 21 N 1.30624 * 120.00106 * 352.03901 * 20 18 17 22 22 Si 1.86806 * 119.99943 * 172.04352 * 20 18 17 23 23 H 1.48499 * 109.46989 * 90.00115 * 22 20 18 24 24 H 1.48497 * 109.46983 * 210.00116 * 22 20 18 25 25 H 1.48501 * 109.46914 * 330.00032 * 22 20 18 26 26 C 1.38750 * 119.54568 * 180.27844 * 9 8 7 27 27 C 1.40924 * 107.50807 * 0.22506 * 8 7 6 28 28 N 1.30639 * 108.07921 * 359.61420 * 27 8 7 29 29 H 1.08999 * 109.47403 * 299.99816 * 1 2 3 30 30 H 1.08996 * 109.47146 * 60.00346 * 1 2 3 31 31 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47569 * 59.99779 * 3 2 1 33 33 H 1.08995 * 109.46906 * 299.99434 * 3 2 1 34 34 H 1.09000 * 109.47046 * 59.99792 * 4 3 2 35 35 H 1.08994 * 109.47298 * 300.00093 * 4 3 2 36 36 H 1.09000 * 109.46821 * 60.00253 * 5 4 3 37 37 H 1.08994 * 109.47579 * 300.00519 * 5 4 3 38 38 H 1.08000 * 126.20022 * 359.97438 * 7 6 5 39 39 H 1.07999 * 119.42238 * 0.04535 * 10 9 8 40 40 H 1.08001 * 119.90891 * 179.97438 * 11 10 9 41 41 H 1.09004 * 109.47261 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.47093 * 299.99514 * 16 15 13 43 43 H 1.08993 * 109.47368 * 59.99742 * 16 15 13 44 44 H 0.97007 * 119.99968 * 179.97438 * 21 20 18 45 45 H 1.08003 * 120.13088 * 359.97438 * 26 9 8 46 46 H 1.08009 * 125.95981 * 179.76734 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6181 2.4667 0.0012 7 6 6.4552 3.0280 -0.8928 8 6 7.7283 2.6816 -0.5406 9 6 8.9717 3.0778 -1.2453 10 6 8.8913 3.8828 -2.3847 11 6 10.0248 4.2701 -3.0654 12 6 11.2833 3.8599 -2.6234 13 6 12.4972 4.2696 -3.3460 14 8 13.5872 3.8845 -2.9704 15 8 12.4008 5.0723 -4.4251 16 6 13.6399 5.4366 -5.0884 17 6 11.3791 3.0157 -1.4298 18 6 12.6344 2.5835 -0.9570 19 1 13.4271 2.3606 -1.6558 20 6 12.8524 2.4373 0.4209 21 7 11.9504 2.8474 1.2721 22 14 14.4329 1.6562 1.0388 23 1 15.4599 2.7097 1.2400 24 1 14.1728 0.9658 2.3276 25 1 14.9221 0.6722 0.0400 26 6 10.1984 2.6397 -0.7673 27 6 7.6447 1.8742 0.6114 28 7 6.3839 1.7545 0.9320 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8465 0.8899 33 1 1.6885 1.8463 -0.8900 34 1 3.8573 0.6436 -0.8891 35 1 3.8566 0.6440 0.8908 36 1 3.8357 3.1238 0.8896 37 1 3.8364 3.1228 -0.8903 38 1 6.1710 3.6409 -1.7354 39 1 7.9236 4.2073 -2.7377 40 1 9.9391 4.8922 -3.9440 41 1 13.4207 6.0835 -5.9380 42 1 14.2857 5.9650 -4.3871 43 1 14.1435 4.5354 -5.4379 44 1 12.1010 2.7460 2.2250 45 1 10.2456 2.0148 0.1124 46 1 8.4778 1.4333 1.1388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242489707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:40 Heat of formation + Delta-G solvation = -58.485676 kcal Electronic energy + Delta-G solvation = -28578.831216 eV Core-core repulsion = 24434.352601 eV Total energy + Delta-G solvation = -4144.478614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.10521 -40.91942 -39.01249 -38.77691 -36.97220 -35.85805 -35.51714 -32.92767 -32.11802 -31.47989 -29.81317 -28.56665 -27.69841 -27.19525 -25.98648 -24.27165 -23.38383 -22.75048 -22.01038 -21.07084 -20.74612 -19.14221 -18.26158 -18.15494 -17.42733 -17.25133 -17.11106 -16.96703 -16.83258 -16.28301 -15.87666 -15.55424 -15.21056 -15.15484 -14.99590 -14.72514 -14.37842 -14.16574 -13.92929 -13.74183 -13.45589 -13.27651 -13.20484 -12.92641 -12.83774 -12.79414 -12.72500 -12.52183 -12.39700 -12.10177 -12.06070 -11.96866 -11.57042 -11.53748 -11.29468 -11.19111 -10.66600 -10.62659 -10.35645 -10.20228 -9.25160 -8.75713 -8.41969 -6.41774 0.14970 1.00012 1.08467 1.35118 1.47510 1.49254 1.60194 1.74141 2.19488 2.20098 2.40980 2.79857 2.83424 3.60083 3.73813 3.91646 3.97143 4.10406 4.15334 4.32724 4.35826 4.39680 4.41598 4.44413 4.46351 4.48233 4.54768 4.56906 4.61200 4.72173 4.77401 4.86130 4.86744 4.90247 5.01763 5.13540 5.15180 5.26353 5.33478 5.56512 5.60377 5.78001 5.89284 6.05466 6.14888 6.19080 6.25306 6.35179 6.66854 6.76523 6.81561 6.93468 7.33396 8.24181 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.002360 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.101638 B =11859.707967 C =13725.470073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.067 3.933 4 C -0.126 4.126 5 C 0.134 3.866 6 N -0.369 5.369 7 C 0.083 3.917 8 C -0.213 4.213 9 C 0.038 3.962 10 C -0.236 4.236 11 C -0.027 4.027 12 C -0.294 4.294 13 C 0.501 3.499 14 O -0.554 6.554 15 O -0.373 6.373 16 C 0.033 3.967 17 C 0.127 3.873 18 C -0.450 4.450 19 H 0.085 0.915 20 C 0.034 3.966 21 N -0.805 5.805 22 Si 0.979 3.021 23 H -0.269 1.269 24 H -0.255 1.255 25 H -0.263 1.263 26 C -0.174 4.174 27 C 0.054 3.946 28 N -0.322 5.322 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.216 0.784 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.293 0.707 45 H 0.109 0.891 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.208 1.849 -3.933 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.010 4.010 4 C -0.164 4.164 5 C 0.015 3.985 6 N -0.150 5.150 7 C -0.064 4.064 8 C -0.224 4.224 9 C 0.036 3.964 10 C -0.255 4.255 11 C -0.045 4.045 12 C -0.297 4.297 13 C 0.353 3.647 14 O -0.448 6.448 15 O -0.291 6.291 16 C -0.061 4.061 17 C 0.124 3.876 18 C -0.478 4.478 19 H 0.103 0.897 20 C -0.183 4.183 21 N -0.430 5.430 22 Si 0.800 3.200 23 H -0.194 1.194 24 H -0.179 1.179 25 H -0.187 1.187 26 C -0.194 4.194 27 C -0.132 4.132 28 N -0.143 5.143 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.155 0.845 38 H 0.232 0.768 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.127 0.873 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.857 1.117 -2.755 20.078 hybrid contribution 1.910 0.115 -0.001 1.913 sum -17.947 1.232 -2.755 18.199 Atomic orbital electron populations 1.22926 0.79165 1.03724 1.01169 1.87851 1.21791 1.29148 1.95704 1.22451 0.91676 0.84629 1.02233 1.21651 0.94788 0.96810 1.03156 1.21898 0.72230 0.97795 1.06616 1.48690 1.07443 1.38510 1.20349 1.23006 0.88782 0.98542 0.96072 1.19213 0.93299 1.08967 1.00915 1.18194 0.90415 0.94475 0.93355 1.20581 0.98083 1.07833 0.99038 1.21010 0.90930 0.95120 0.97417 1.20103 0.90809 1.13444 1.05374 1.21360 0.89691 0.75480 0.78134 1.90690 1.30923 1.56183 1.66979 1.86538 1.37676 1.63099 1.41751 1.23369 0.84523 1.00853 0.97310 1.18732 0.93844 0.86431 0.88622 1.20217 0.98678 1.36130 0.92810 0.89744 1.26819 1.01682 0.93255 0.96510 1.69736 1.35233 1.33478 1.04538 0.85246 0.77382 0.78974 0.78399 1.19377 1.17902 1.18714 1.21166 0.90582 1.05336 1.02310 1.24018 0.94492 0.98204 0.96454 1.77096 1.03388 1.18949 1.14902 0.92951 0.92623 0.89081 0.91510 0.90622 0.91890 0.92278 0.88255 0.84456 0.76795 0.84481 0.85128 0.84698 0.93163 0.92872 0.89629 0.87325 0.80951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.43 -7.82 10.70 -148.98 -1.59 -9.41 16 3 C 0.07 0.87 5.94 71.98 0.43 1.30 16 4 C -0.13 -2.23 5.76 30.59 0.18 -2.05 16 5 C 0.13 2.06 6.50 86.38 0.56 2.62 16 6 N -0.37 -9.63 3.67 -347.22 -1.27 -10.90 16 7 C 0.08 2.26 10.80 83.86 0.91 3.17 16 8 C -0.21 -7.84 6.03 -20.33 -0.12 -7.96 16 9 C 0.04 1.62 5.86 -20.11 -0.12 1.50 16 10 C -0.24 -9.15 9.50 22.52 0.21 -8.94 16 11 C -0.03 -1.12 9.60 22.48 0.22 -0.91 16 12 C -0.29 -14.93 6.07 -18.48 -0.11 -15.04 16 13 C 0.50 24.82 7.87 70.14 0.55 25.37 16 14 O -0.55 -30.32 13.50 19.65 0.27 -30.06 16 15 O -0.37 -14.98 9.83 -57.53 -0.57 -15.55 16 16 C 0.03 0.99 10.57 113.37 1.20 2.19 16 17 C 0.13 7.02 5.64 -19.91 -0.11 6.91 16 18 C -0.45 -25.62 7.87 23.42 0.18 -25.44 16 19 H 0.08 5.04 5.89 -2.91 -0.02 5.02 16 20 C 0.03 1.79 5.28 85.37 0.45 2.24 16 21 N -0.80 -41.80 11.12 21.88 0.24 -41.56 16 22 Si 0.98 40.77 29.57 68.60 2.03 42.80 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 26 C -0.17 -8.87 8.15 22.95 0.19 -8.69 16 27 C 0.05 2.04 11.39 85.53 0.97 3.01 16 28 N -0.32 -10.99 12.37 -56.42 -0.70 -11.69 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.14 1.02 8.07 -2.39 -0.02 1.00 16 38 H 0.22 3.86 7.22 -2.91 -0.02 3.84 16 39 H 0.14 4.01 6.90 -2.91 -0.02 3.99 16 40 H 0.13 4.70 7.61 -2.91 -0.02 4.68 16 41 H 0.13 2.74 8.14 -2.39 -0.02 2.73 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.29 13.69 8.29 -92.70 -0.77 12.93 16 45 H 0.11 5.71 5.51 -2.91 -0.02 5.69 16 46 H 0.17 6.68 7.30 -2.91 -0.02 6.65 16 Total: -1.00 -75.00 392.26 6.24 -68.77 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 1.00 Total: 26.79 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 6.83 Total: -19.19 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -1.73 Total: -64.15 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -1.89 Total: -55.02 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -75.00 6.24 -68.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242489707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.281 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds