Wall clock time and date at job start Wed Apr 1 2020 02:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00250 * 2 1 4 4 O 1.42892 * 109.47275 * 84.90783 * 3 2 1 5 5 C 1.42904 * 114.00090 * 285.59045 * 4 3 2 6 6 C 1.50706 * 109.47356 * 204.90913 * 3 2 1 7 7 C 1.38405 * 120.46310 * 295.23185 * 6 3 2 8 8 C 1.50701 * 120.74430 * 359.97438 * 7 6 3 9 9 N 1.46894 * 109.47562 * 83.62541 * 8 7 6 10 10 C 1.38775 * 118.51896 * 180.26147 * 7 6 3 11 11 C 1.38284 * 119.37431 * 359.73427 * 10 7 6 12 12 N 1.31740 * 120.90202 * 0.02562 * 11 10 7 13 13 C 1.32730 * 121.60362 * 359.97438 * 12 11 10 14 14 C 1.48212 * 119.73499 * 179.97438 * 13 12 11 15 15 C 1.39339 * 120.16534 * 123.54976 * 14 13 12 16 16 C 1.37982 * 119.93929 * 179.72386 * 15 14 13 17 17 C 1.38466 * 120.28410 * 0.02562 * 16 15 14 18 18 C 1.38095 * 120.32815 * 0.02562 * 17 16 15 19 19 C 1.38773 * 120.05430 * 359.95282 * 18 17 16 20 20 O 1.35643 * 120.14141 * 180.02562 * 19 18 17 21 21 C 1.34816 * 116.99502 * 3.26002 * 20 19 18 22 22 H 1.08000 * 119.99941 * 1.38368 * 21 20 19 23 23 C 1.38659 * 119.99737 * 181.37838 * 21 20 19 24 24 N 1.31551 * 120.00022 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00086 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47185 * 59.99878 * 25 23 21 27 27 H 1.48497 * 109.47369 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47374 * 300.00277 * 25 23 21 29 29 H 1.08999 * 109.47038 * 185.68034 * 1 2 3 30 30 H 1.09000 * 109.46810 * 305.67894 * 1 2 3 31 31 H 1.08994 * 109.46897 * 65.67625 * 1 2 3 32 32 H 1.09005 * 109.46889 * 324.90475 * 3 2 1 33 33 H 1.09001 * 109.46828 * 74.39573 * 5 4 3 34 34 H 1.08995 * 109.47772 * 194.40200 * 5 4 3 35 35 H 1.09003 * 109.47154 * 314.40503 * 5 4 3 36 36 H 1.09002 * 109.46844 * 203.62987 * 8 7 6 37 37 H 1.09001 * 109.46743 * 323.62839 * 8 7 6 38 38 H 1.00897 * 111.00095 * 186.58815 * 9 8 7 39 39 H 1.00903 * 110.99986 * 310.54903 * 9 8 7 40 40 H 1.07995 * 120.31467 * 179.70687 * 10 7 6 41 41 H 1.07996 * 119.54865 * 179.97438 * 11 10 7 42 42 H 1.07998 * 120.02481 * 359.70041 * 15 14 13 43 43 H 1.08004 * 119.85520 * 179.97438 * 16 15 14 44 44 H 1.07992 * 119.83475 * 180.02562 * 17 16 15 45 45 H 1.07998 * 119.97150 * 180.02562 * 18 17 16 46 46 H 0.96997 * 120.00096 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.0948 1.7892 1.3419 5 6 0.8409 2.1975 1.8926 6 6 3.3919 1.2402 -0.5984 7 6 4.3958 0.5244 0.0303 8 6 4.1298 -0.2025 1.3233 9 7 3.5377 -1.5154 1.0342 10 6 5.6545 0.4959 -0.5534 11 6 5.8674 1.1734 -1.7400 12 7 4.8931 1.8435 -2.3207 13 6 3.6754 1.8957 -1.7953 14 6 2.6100 2.6626 -2.4835 15 6 1.4187 2.0366 -2.8448 16 6 0.4278 2.7564 -3.4803 17 6 0.6117 4.0996 -3.7617 18 6 1.7883 4.7311 -3.4097 19 6 2.7939 4.0206 -2.7697 20 8 3.9501 4.6392 -2.4228 21 6 4.0333 5.9625 -2.6671 22 1 3.1931 6.4857 -3.0992 23 6 5.1976 6.6516 -2.3634 24 7 6.2207 6.0143 -1.8365 25 14 5.3128 8.4851 -2.7013 26 1 4.2626 9.1976 -1.9299 27 1 6.6507 8.9812 -2.2900 28 1 5.1162 8.7345 -4.1519 29 1 -0.3633 -1.0226 0.1017 30 1 -0.3633 0.5994 0.8348 31 1 -0.3633 0.4233 -0.9364 32 1 1.3899 1.9794 -0.5909 33 1 0.2470 1.3166 2.1361 34 1 1.0139 2.7805 2.7972 35 1 0.3054 2.8068 1.1645 36 1 5.0668 -0.3375 1.8636 37 1 3.4397 0.3810 1.9328 38 1 3.2514 -1.9780 1.8840 39 1 2.7651 -1.4299 0.3910 40 1 6.4603 -0.0497 -0.0851 41 1 6.8460 1.1534 -2.1964 42 1 1.2713 0.9890 -2.6279 43 1 -0.4949 2.2698 -3.7600 44 1 -0.1689 4.6561 -4.2590 45 1 1.9254 5.7791 -3.6317 46 1 7.0351 6.4965 -1.6238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:16 Heat of formation + Delta-G solvation = -41.219730 kcal Electronic energy + Delta-G solvation = -31710.066705 eV Core-core repulsion = 27566.336798 eV Total energy + Delta-G solvation = -4143.729907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.49260 -38.95647 -38.56317 -36.46455 -35.98052 -34.96971 -32.57543 -32.30094 -31.33884 -29.51019 -28.84262 -27.80305 -26.08569 -25.68526 -25.31203 -24.45953 -22.84566 -21.55483 -21.22592 -20.20060 -18.06419 -17.44414 -17.31370 -17.18826 -16.65453 -15.94001 -15.56378 -15.25028 -14.74815 -14.61572 -14.47334 -14.40110 -14.22915 -14.02886 -13.75667 -13.62984 -13.52902 -13.24523 -12.95810 -12.68338 -12.60045 -12.50696 -12.13455 -11.74535 -11.72265 -11.53404 -11.39907 -11.15896 -10.92682 -10.84306 -10.66843 -10.49991 -9.97842 -9.83947 -9.47263 -9.23313 -8.94601 -8.85529 -8.66715 -8.34805 -8.02138 -7.26209 -6.47937 -4.05902 1.36262 1.66907 2.13716 2.29967 3.10468 3.11900 3.14504 3.39366 3.89823 3.92439 4.31797 4.51912 4.77984 4.82345 4.93254 5.03013 5.03852 5.08447 5.13457 5.17926 5.24255 5.26177 5.32386 5.43593 5.50449 5.56386 5.60746 5.68581 5.69375 5.79886 5.87389 5.94477 6.12924 6.17122 6.22693 6.39628 6.58113 6.62028 6.71563 6.97280 6.99152 7.01544 7.10706 7.20150 7.25973 7.31411 7.34261 7.68547 7.75842 7.93199 8.62462 8.95171 9.64834 10.68023 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.004506 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.793771 B = 6212.448466 C = 7238.693638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.393 6.393 3 C 0.291 3.709 4 O -0.382 6.382 5 C 0.021 3.979 6 C -0.136 4.136 7 C -0.003 4.003 8 C 0.096 3.904 9 N -0.843 5.843 10 C -0.180 4.180 11 C 0.120 3.880 12 N -0.452 5.452 13 C 0.232 3.768 14 C -0.143 4.143 15 C -0.057 4.057 16 C -0.222 4.222 17 C -0.061 4.061 18 C -0.235 4.235 19 C 0.180 3.820 20 O -0.147 6.147 21 C -0.397 4.397 22 H 0.092 0.908 23 C 0.044 3.956 24 N -0.847 5.847 25 Si 0.940 3.060 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.333 0.667 39 H 0.354 0.646 40 H 0.131 0.869 41 H 0.154 0.846 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.131 0.869 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.179 -9.803 5.406 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.314 6.314 3 C 0.196 3.804 4 O -0.303 6.303 5 C -0.075 4.075 6 C -0.139 4.139 7 C -0.011 4.011 8 C -0.034 4.034 9 N -0.377 5.377 10 C -0.201 4.201 11 C -0.038 4.038 12 N -0.160 5.160 13 C 0.095 3.905 14 C -0.146 4.146 15 C -0.076 4.076 16 C -0.241 4.241 17 C -0.080 4.080 18 C -0.255 4.255 19 C 0.123 3.877 20 O -0.048 6.048 21 C -0.473 4.473 22 H 0.110 0.890 23 C -0.162 4.162 24 N -0.480 5.480 25 Si 0.764 3.236 26 H -0.195 1.195 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.171 0.829 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.148 0.852 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.510 -9.700 4.611 13.703 hybrid contribution -1.326 1.223 0.887 2.010 sum -9.835 -8.477 5.499 14.101 Atomic orbital electron populations 1.23129 0.81124 1.03081 1.00962 1.87835 1.19765 1.29941 1.93856 1.21919 0.92284 0.83026 0.83149 1.88072 1.30388 1.81573 1.30226 1.23005 0.86470 0.98743 0.99320 1.19865 0.93638 1.03439 0.96949 1.19868 0.92590 0.93397 0.95289 1.20807 1.00074 0.89571 0.92938 1.58988 1.39830 1.20423 1.18478 1.21974 0.97259 1.02885 0.97958 1.22785 0.97956 0.91008 0.92017 1.67974 0.99283 1.15237 1.33500 1.19384 0.90894 0.90928 0.89318 1.17482 0.94578 0.91494 1.11017 1.20694 0.91866 0.98214 0.96831 1.20445 0.99924 0.94974 1.08798 1.20838 0.96056 0.94340 0.96725 1.21139 0.95142 1.01415 1.07756 1.19208 0.86849 0.90669 0.90970 1.84031 1.28841 1.23291 1.68602 1.21339 1.01542 0.80661 1.43758 0.89044 1.25293 0.94346 1.00365 0.96198 1.70057 1.03588 1.36618 1.37722 0.85802 0.78099 0.80501 0.79161 1.19499 1.20208 1.19396 0.89484 0.93263 0.93202 0.89848 0.93589 0.89599 0.93514 0.90995 0.91888 0.85540 0.82846 0.85090 0.82881 0.86915 0.87294 0.87243 0.85155 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.68 101.05 1.08 1.21 16 2 O -0.39 -5.37 7.35 -59.04 -0.43 -5.81 16 3 C 0.29 4.77 1.93 36.01 0.07 4.84 16 4 O -0.38 -6.17 8.11 -59.04 -0.48 -6.65 16 5 C 0.02 0.25 9.89 101.05 1.00 1.25 16 6 C -0.14 -2.62 5.26 -104.14 -0.55 -3.17 16 7 C 0.00 -0.06 5.30 -104.36 -0.55 -0.61 16 8 C 0.10 1.43 6.30 -4.98 -0.03 1.40 16 9 N -0.84 -11.31 9.64 -11.41 -0.11 -11.42 16 10 C -0.18 -3.12 9.79 -39.37 -0.39 -3.50 16 11 C 0.12 2.33 11.17 -17.57 -0.20 2.13 16 12 N -0.45 -10.41 10.02 -9.79 -0.10 -10.51 16 13 C 0.23 5.10 5.86 -82.96 -0.49 4.61 16 14 C -0.14 -3.13 4.75 -104.73 -0.50 -3.63 16 15 C -0.06 -1.03 7.62 -39.27 -0.30 -1.33 16 16 C -0.22 -3.67 10.03 -39.59 -0.40 -4.07 16 17 C -0.06 -1.07 10.03 -39.55 -0.40 -1.47 16 18 C -0.24 -5.01 9.15 -39.44 -0.36 -5.37 16 19 C 0.18 4.39 6.65 -38.72 -0.26 4.13 16 20 O -0.15 -4.20 8.98 0.42 0.00 -4.19 16 21 C -0.40 -11.00 9.48 30.89 0.29 -10.71 16 22 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 23 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 24 N -0.85 -24.74 13.67 55.48 0.76 -23.98 16 25 Si 0.94 20.35 29.55 -169.99 -5.02 15.32 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.44 4.69 -51.93 -0.24 0.20 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.43 4.67 -51.93 -0.24 1.19 16 33 H 0.05 0.45 6.01 -51.93 -0.31 0.14 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.55 7.83 -51.93 -0.41 0.14 16 36 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 37 H 0.06 0.98 5.49 -51.93 -0.28 0.70 16 38 H 0.33 3.66 9.08 -39.29 -0.36 3.31 16 39 H 0.35 5.01 5.87 -39.29 -0.23 4.78 16 40 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.15 2.52 8.06 -52.49 -0.42 2.09 16 42 H 0.11 1.81 7.79 -52.49 -0.41 1.40 16 43 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -32.95 373.33 -7.39 -40.34 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.57 Total: 14.43 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.06 Total: -13.16 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.55 Total: -45.91 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.91 Total: -16.65 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.95 -7.39 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.884 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds