Wall clock time and date at job start Wed Apr 1 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00250 * 2 1 4 4 O 1.42892 * 109.47275 * 84.90783 * 3 2 1 5 5 C 1.42904 * 114.00090 * 285.59045 * 4 3 2 6 6 C 1.50706 * 109.47356 * 204.90913 * 3 2 1 7 7 C 1.38405 * 120.46310 * 295.23185 * 6 3 2 8 8 C 1.50701 * 120.74430 * 359.97438 * 7 6 3 9 9 N 1.46894 * 109.47562 * 83.62541 * 8 7 6 10 10 C 1.38775 * 118.51896 * 180.26147 * 7 6 3 11 11 C 1.38284 * 119.37431 * 359.73427 * 10 7 6 12 12 N 1.31740 * 120.90202 * 0.02562 * 11 10 7 13 13 C 1.32730 * 121.60362 * 359.97438 * 12 11 10 14 14 C 1.48212 * 119.73499 * 179.97438 * 13 12 11 15 15 C 1.39339 * 120.16534 * 123.54976 * 14 13 12 16 16 C 1.37982 * 119.93929 * 179.72386 * 15 14 13 17 17 C 1.38466 * 120.28410 * 0.02562 * 16 15 14 18 18 C 1.38095 * 120.32815 * 0.02562 * 17 16 15 19 19 C 1.38773 * 120.05430 * 359.95282 * 18 17 16 20 20 O 1.35643 * 120.14141 * 180.02562 * 19 18 17 21 21 C 1.34816 * 116.99502 * 3.26002 * 20 19 18 22 22 H 1.08000 * 119.99941 * 1.38368 * 21 20 19 23 23 C 1.38659 * 119.99737 * 181.37838 * 21 20 19 24 24 N 1.31551 * 120.00022 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00086 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47185 * 59.99878 * 25 23 21 27 27 H 1.48497 * 109.47369 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47374 * 300.00277 * 25 23 21 29 29 H 1.08999 * 109.47038 * 185.68034 * 1 2 3 30 30 H 1.09000 * 109.46810 * 305.67894 * 1 2 3 31 31 H 1.08994 * 109.46897 * 65.67625 * 1 2 3 32 32 H 1.09005 * 109.46889 * 324.90475 * 3 2 1 33 33 H 1.09001 * 109.46828 * 74.39573 * 5 4 3 34 34 H 1.08995 * 109.47772 * 194.40200 * 5 4 3 35 35 H 1.09003 * 109.47154 * 314.40503 * 5 4 3 36 36 H 1.09002 * 109.46844 * 203.62987 * 8 7 6 37 37 H 1.09001 * 109.46743 * 323.62839 * 8 7 6 38 38 H 1.00897 * 111.00095 * 186.58815 * 9 8 7 39 39 H 1.00903 * 110.99986 * 310.54903 * 9 8 7 40 40 H 1.07995 * 120.31467 * 179.70687 * 10 7 6 41 41 H 1.07996 * 119.54865 * 179.97438 * 11 10 7 42 42 H 1.07998 * 120.02481 * 359.70041 * 15 14 13 43 43 H 1.08004 * 119.85520 * 179.97438 * 16 15 14 44 44 H 1.07992 * 119.83475 * 180.02562 * 17 16 15 45 45 H 1.07998 * 119.97150 * 180.02562 * 18 17 16 46 46 H 0.96997 * 120.00096 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.0948 1.7892 1.3419 5 6 0.8409 2.1975 1.8926 6 6 3.3919 1.2402 -0.5984 7 6 4.3958 0.5244 0.0303 8 6 4.1298 -0.2025 1.3233 9 7 3.5377 -1.5154 1.0342 10 6 5.6545 0.4959 -0.5534 11 6 5.8674 1.1734 -1.7400 12 7 4.8931 1.8435 -2.3207 13 6 3.6754 1.8957 -1.7953 14 6 2.6100 2.6626 -2.4835 15 6 1.4187 2.0366 -2.8448 16 6 0.4278 2.7564 -3.4803 17 6 0.6117 4.0996 -3.7617 18 6 1.7883 4.7311 -3.4097 19 6 2.7939 4.0206 -2.7697 20 8 3.9501 4.6392 -2.4228 21 6 4.0333 5.9625 -2.6671 22 1 3.1931 6.4857 -3.0992 23 6 5.1976 6.6516 -2.3634 24 7 6.2207 6.0143 -1.8365 25 14 5.3128 8.4851 -2.7013 26 1 4.2626 9.1976 -1.9299 27 1 6.6507 8.9812 -2.2900 28 1 5.1162 8.7345 -4.1519 29 1 -0.3633 -1.0226 0.1017 30 1 -0.3633 0.5994 0.8348 31 1 -0.3633 0.4233 -0.9364 32 1 1.3899 1.9794 -0.5909 33 1 0.2470 1.3166 2.1361 34 1 1.0139 2.7805 2.7972 35 1 0.3054 2.8068 1.1645 36 1 5.0668 -0.3375 1.8636 37 1 3.4397 0.3810 1.9328 38 1 3.2514 -1.9780 1.8840 39 1 2.7651 -1.4299 0.3910 40 1 6.4603 -0.0497 -0.0851 41 1 6.8460 1.1534 -2.1964 42 1 1.2713 0.9890 -2.6279 43 1 -0.4949 2.2698 -3.7600 44 1 -0.1689 4.6561 -4.2590 45 1 1.9254 5.7791 -3.6317 46 1 7.0351 6.4965 -1.6238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:15 Heat of formation + Delta-G solvation = -65.193593 kcal Electronic energy + Delta-G solvation = -31711.106289 eV Core-core repulsion = 27566.336798 eV Total energy + Delta-G solvation = -4144.769491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89694 -40.52708 -39.85049 -38.14333 -37.05187 -36.22923 -34.32237 -33.94626 -32.63847 -30.99871 -30.37166 -28.94457 -27.40329 -27.00393 -26.74666 -25.75978 -24.24513 -23.20095 -22.62896 -21.65826 -19.85769 -18.88653 -18.68550 -18.37818 -17.89924 -17.32022 -16.92753 -16.58796 -16.39012 -16.15523 -15.87163 -15.58554 -15.39528 -15.30570 -15.27126 -15.17073 -14.62957 -14.53651 -14.47799 -14.13137 -14.01119 -13.62735 -13.54948 -13.32014 -13.09303 -12.89975 -12.62292 -12.53109 -12.44421 -12.38130 -12.17146 -12.05000 -11.26764 -11.06676 -10.82572 -10.80508 -10.66257 -10.39947 -10.16253 -9.54627 -9.44152 -8.94672 -8.45072 -6.12335 -0.11606 0.22447 0.59928 0.74544 1.32544 1.43926 1.48716 2.16009 2.27091 2.62786 2.79750 3.09779 3.19512 3.34828 3.47012 3.59543 3.66809 3.78333 3.89583 4.10083 4.13332 4.19919 4.26151 4.28442 4.30162 4.40967 4.50470 4.54270 4.58934 4.60036 4.63347 4.70657 4.74867 4.89022 4.92448 4.97782 5.03180 5.09571 5.16478 5.32180 5.53987 5.62245 5.70018 5.77256 5.95176 5.98597 6.00325 6.16021 6.28775 6.74694 6.97467 7.12846 7.80420 8.76343 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.004506 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.793771 B = 6212.448466 C = 7238.693638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.396 6.396 3 C 0.305 3.695 4 O -0.406 6.406 5 C 0.013 3.987 6 C -0.143 4.143 7 C -0.013 4.013 8 C 0.104 3.896 9 N -0.840 5.840 10 C -0.172 4.172 11 C 0.097 3.903 12 N -0.500 5.500 13 C 0.197 3.803 14 C -0.152 4.152 15 C -0.056 4.056 16 C -0.190 4.190 17 C -0.055 4.055 18 C -0.250 4.250 19 C 0.139 3.861 20 O -0.203 6.203 21 C -0.418 4.418 22 H 0.102 0.898 23 C -0.018 4.018 24 N -0.909 5.909 25 Si 1.016 2.984 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.257 1.257 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.349 0.651 39 H 0.351 0.649 40 H 0.165 0.835 41 H 0.170 0.830 42 H 0.136 0.864 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.123 0.877 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 -11.263 5.732 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.317 6.317 3 C 0.209 3.791 4 O -0.327 6.327 5 C -0.082 4.082 6 C -0.146 4.146 7 C -0.022 4.022 8 C -0.026 4.026 9 N -0.375 5.375 10 C -0.192 4.192 11 C -0.060 4.060 12 N -0.209 5.209 13 C 0.061 3.939 14 C -0.154 4.154 15 C -0.075 4.075 16 C -0.209 4.209 17 C -0.073 4.073 18 C -0.269 4.269 19 C 0.086 3.914 20 O -0.107 6.107 21 C -0.494 4.494 22 H 0.119 0.881 23 C -0.217 4.217 24 N -0.546 5.546 25 Si 0.835 3.165 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.182 1.182 29 H 0.132 0.868 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.182 0.818 41 H 0.187 0.813 42 H 0.153 0.847 43 H 0.177 0.823 44 H 0.170 0.830 45 H 0.141 0.859 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.000 -11.204 4.932 17.142 hybrid contribution -0.593 1.358 0.776 1.673 sum -12.593 -9.846 5.708 16.973 Atomic orbital electron populations 1.23430 0.78971 1.05119 1.01724 1.87814 1.21964 1.28021 1.93878 1.21490 0.90568 0.83901 0.83105 1.88027 1.32753 1.81958 1.29973 1.23246 0.85364 1.00099 0.99469 1.20169 0.95799 1.02520 0.96099 1.20326 0.92398 0.93215 0.96232 1.20742 1.00765 0.89873 0.91185 1.58954 1.39813 1.19389 1.19350 1.22326 0.98207 1.01807 0.96878 1.23181 0.98140 0.91390 0.93276 1.67864 1.00563 1.16740 1.35687 1.19636 0.90889 0.92403 0.90997 1.17930 0.96008 0.90819 1.10610 1.21031 0.90833 0.99361 0.96286 1.21070 1.00643 0.94310 1.04831 1.21300 0.95304 0.95120 0.95617 1.21305 0.96182 1.01336 1.08051 1.19861 0.86972 0.92124 0.92413 1.84018 1.31292 1.23565 1.71851 1.21828 1.02249 0.81359 1.44004 0.88073 1.26545 0.93666 1.05606 0.95888 1.70227 1.04518 1.38762 1.41109 0.84697 0.78361 0.73902 0.79544 1.18090 1.19822 1.18177 0.86846 0.92228 0.92706 0.90998 0.90972 0.88548 0.93536 0.89646 0.92381 0.83777 0.83167 0.81764 0.81313 0.84659 0.82266 0.82995 0.85942 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 10.68 113.37 1.21 1.26 16 2 O -0.40 -9.90 7.35 -126.21 -0.93 -10.83 16 3 C 0.30 9.73 1.93 71.24 0.14 9.87 16 4 O -0.41 -12.81 8.11 -126.21 -1.02 -13.83 16 5 C 0.01 0.30 9.89 113.37 1.12 1.42 16 6 C -0.14 -5.59 5.26 -19.55 -0.10 -5.69 16 7 C -0.01 -0.47 5.30 -19.70 -0.10 -0.58 16 8 C 0.10 2.96 6.30 85.56 0.54 3.50 16 9 N -0.84 -20.62 9.64 -190.01 -1.83 -22.45 16 10 C -0.17 -5.99 9.79 22.41 0.22 -5.77 16 11 C 0.10 3.97 11.17 84.72 0.95 4.92 16 12 N -0.50 -24.51 10.02 -184.89 -1.85 -26.37 16 13 C 0.20 9.07 5.86 41.93 0.25 9.31 16 14 C -0.15 -6.78 4.75 -19.93 -0.09 -6.87 16 15 C -0.06 -1.93 7.62 22.47 0.17 -1.75 16 16 C -0.19 -5.47 10.03 22.26 0.22 -5.25 16 17 C -0.06 -1.78 10.03 22.29 0.22 -1.55 16 18 C -0.25 -10.73 9.15 22.36 0.20 -10.53 16 19 C 0.14 7.12 6.65 22.82 0.15 7.27 16 20 O -0.20 -12.46 8.98 -21.42 -0.19 -12.65 16 21 C -0.42 -24.71 9.48 67.92 0.64 -24.06 16 22 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 23 C -0.02 -1.06 5.49 84.84 0.47 -0.60 16 24 N -0.91 -57.05 13.67 21.61 0.30 -56.76 16 25 Si 1.02 43.58 29.55 68.60 2.03 45.61 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 29 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 0.86 4.69 -2.39 -0.01 0.85 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 2.41 4.67 -2.38 -0.01 2.40 16 33 H 0.07 1.20 6.01 -2.39 -0.01 1.19 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.02 7.83 -2.39 -0.02 1.00 16 36 H 0.09 2.18 8.06 -2.39 -0.02 2.16 16 37 H 0.06 1.73 5.49 -2.39 -0.01 1.72 16 38 H 0.35 6.71 9.08 -89.70 -0.81 5.90 16 39 H 0.35 9.15 5.87 -89.69 -0.53 8.62 16 40 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.17 5.93 8.06 -2.91 -0.02 5.91 16 42 H 0.14 3.98 7.79 -2.91 -0.02 3.96 16 43 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 45 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 46 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -80.32 373.33 2.41 -77.91 By element: Atomic # 1 Polarization: 44.77 SS G_CDS: -0.28 Total: 44.49 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 6.20 Total: -25.12 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -3.39 Total: -105.58 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -2.14 Total: -37.31 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -80.32 2.41 -77.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.715 kcal (2) G-P(sol) polarization free energy of solvation -80.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds