Wall clock time and date at job start Wed Apr 1 2020 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99811 * 2 1 4 4 O 1.42901 * 109.47129 * 277.85099 * 3 2 1 5 5 C 1.42894 * 113.99854 * 72.15662 * 4 3 2 6 6 C 1.50697 * 109.47140 * 157.84871 * 3 2 1 7 7 C 1.38418 * 120.46526 * 51.30475 * 6 3 2 8 8 C 1.50701 * 120.74210 * 359.97438 * 7 6 3 9 9 N 1.46907 * 109.46873 * 80.84134 * 8 7 6 10 10 C 1.38767 * 118.51598 * 179.97438 * 7 6 3 11 11 C 1.38284 * 119.37829 * 0.02562 * 10 7 6 12 12 N 1.31736 * 120.89385 * 0.02562 * 11 10 7 13 13 C 1.32727 * 121.61056 * 359.72526 * 12 11 10 14 14 C 1.48250 * 119.73127 * 180.26923 * 13 12 11 15 15 C 1.39475 * 120.05095 * 135.12332 * 14 13 12 16 16 C 1.37819 * 119.94261 * 179.78238 * 15 14 13 17 17 C 1.39013 * 120.05514 * 0.49394 * 16 15 14 18 18 O 1.35679 * 119.94764 * 179.72003 * 17 16 15 19 19 C 1.34818 * 116.99961 * 185.03443 * 18 17 16 20 20 H 1.07996 * 120.00107 * 4.22736 * 19 18 17 21 21 C 1.38662 * 119.99949 * 184.22847 * 19 18 17 22 22 N 1.31549 * 119.99475 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00042 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47213 * 90.00036 * 23 21 19 25 25 H 1.48504 * 109.47072 * 209.99738 * 23 21 19 26 26 H 1.48500 * 109.47260 * 329.99791 * 23 21 19 27 27 C 1.39020 * 120.10796 * 359.73522 * 17 16 15 28 28 C 1.37815 * 120.05501 * 0.02880 * 27 17 16 29 29 H 1.09001 * 109.46738 * 173.70506 * 1 2 3 30 30 H 1.08996 * 109.47663 * 293.70646 * 1 2 3 31 31 H 1.09000 * 109.47162 * 53.71195 * 1 2 3 32 32 H 1.09007 * 109.47199 * 37.85266 * 3 2 1 33 33 H 1.08994 * 109.47684 * 45.54925 * 5 4 3 34 34 H 1.09004 * 109.46875 * 165.54875 * 5 4 3 35 35 H 1.09005 * 109.46793 * 285.54450 * 5 4 3 36 36 H 1.08994 * 109.47346 * 200.83947 * 8 7 6 37 37 H 1.09005 * 109.46838 * 320.84668 * 8 7 6 38 38 H 1.00891 * 110.99765 * 187.09736 * 9 8 7 39 39 H 1.00907 * 110.99811 * 311.05195 * 9 8 7 40 40 H 1.07998 * 120.30926 * 179.97438 * 10 7 6 41 41 H 1.08002 * 119.55199 * 179.97438 * 11 10 7 42 42 H 1.07998 * 120.03121 * 0.02562 * 15 14 13 43 43 H 1.07993 * 119.96989 * 180.22780 * 16 15 14 44 44 H 0.97004 * 119.99634 * 179.97438 * 22 21 19 45 45 H 1.08001 * 119.97641 * 180.02562 * 27 17 16 46 46 H 1.07997 * 120.02581 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 2.0358 1.8155 -1.3347 5 6 0.7516 2.1864 -1.8398 6 6 3.4167 1.2292 0.5357 7 6 4.3168 0.3148 0.0165 8 6 3.9105 -0.6218 -1.0921 9 7 3.9786 0.0838 -2.3788 10 6 5.6016 0.2797 0.5396 11 6 5.9440 1.1516 1.5568 12 7 5.0677 2.0118 2.0339 13 6 3.8305 2.0808 1.5582 14 6 2.8800 3.0690 2.1220 15 6 2.0810 3.8333 1.2719 16 6 1.1949 4.7481 1.7986 17 6 1.1045 4.9166 3.1755 18 8 0.2355 5.8219 3.6915 19 6 0.2701 6.0119 5.0258 20 1 1.0135 5.5064 5.6241 21 6 -0.6490 6.8565 5.6298 22 7 -1.5542 7.4726 4.9008 23 14 -0.6015 7.1192 7.4786 24 1 0.2865 8.2672 7.7928 25 1 -1.9725 7.4040 7.9734 26 1 -0.0810 5.8954 8.1393 27 6 1.9033 4.1594 4.0247 28 6 2.7875 3.2399 3.5031 29 1 -0.3633 -1.0215 -0.1127 30 1 -0.3634 0.4131 0.9409 31 1 -0.3633 0.6082 -0.8283 32 1 1.4166 1.9675 0.6306 33 1 0.2164 2.7618 -1.0846 34 1 0.8755 2.7919 -2.7377 35 1 0.1835 1.2884 -2.0827 36 1 4.5856 -1.4773 -1.1107 37 1 2.8909 -0.9671 -0.9206 38 1 3.6020 -0.4840 -3.1229 39 1 3.5061 0.9740 -2.3285 40 1 6.3271 -0.4225 0.1563 41 1 6.9430 1.1265 1.9663 42 1 2.1537 3.7056 0.2020 43 1 0.5733 5.3374 1.1409 44 1 -2.1974 8.0631 5.3234 45 1 1.8311 4.2918 5.0941 46 1 3.4081 2.6522 4.1632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:19 Heat of formation + Delta-G solvation = -41.654207 kcal Electronic energy + Delta-G solvation = -30702.315197 eV Core-core repulsion = 26558.566449 eV Total energy + Delta-G solvation = -4143.748747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.83721 -39.04882 -38.93705 -36.70242 -36.12554 -35.19010 -32.73652 -32.17002 -31.57428 -30.36464 -28.86986 -27.87642 -26.18798 -25.89020 -25.57073 -24.58465 -22.73751 -22.01494 -21.48992 -20.31982 -18.32939 -17.58524 -17.40790 -17.32773 -16.87552 -16.32071 -15.96374 -15.38313 -14.87696 -14.67274 -14.59628 -14.53958 -14.44804 -14.12553 -13.82482 -13.71553 -13.64981 -13.42163 -13.23102 -12.86832 -12.78833 -12.59660 -12.45163 -12.05594 -11.80503 -11.68361 -11.60960 -11.38189 -11.02717 -10.88213 -10.76109 -10.52789 -10.04819 -9.96966 -9.65200 -9.53638 -9.37131 -9.11593 -8.81522 -8.54648 -8.32632 -7.25674 -6.60237 -4.17008 0.96080 1.25036 2.07483 2.22748 3.05995 3.06871 3.11660 3.21642 3.58250 3.85711 4.04820 4.31881 4.50562 4.59663 4.67402 4.80875 4.84350 4.94504 4.96763 5.01650 5.08427 5.16442 5.19407 5.23048 5.27372 5.42621 5.48159 5.54580 5.57568 5.60689 5.62949 5.76884 5.92269 5.98021 6.07469 6.23693 6.32203 6.48287 6.66145 6.77026 6.81130 6.87820 6.93026 7.07286 7.13947 7.22274 7.27651 7.57580 7.62473 7.84914 8.12207 8.85162 9.51761 10.56846 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.002995 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.319322 B = 9345.478029 C =10384.431284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.389 6.389 3 C 0.281 3.719 4 O -0.390 6.390 5 C 0.015 3.985 6 C -0.137 4.137 7 C 0.004 3.996 8 C 0.092 3.908 9 N -0.845 5.845 10 C -0.185 4.185 11 C 0.115 3.885 12 N -0.483 5.483 13 C 0.228 3.772 14 C -0.167 4.167 15 C -0.059 4.059 16 C -0.196 4.196 17 C 0.165 3.835 18 O -0.167 6.167 19 C -0.393 4.393 20 H 0.096 0.904 21 C 0.041 3.959 22 N -0.856 5.856 23 Si 0.943 3.057 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.238 4.238 28 C -0.024 4.024 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.335 0.665 39 H 0.357 0.643 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.273 0.727 45 H 0.132 0.868 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -14.704 -10.929 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.310 6.310 3 C 0.187 3.813 4 O -0.310 6.310 5 C -0.081 4.081 6 C -0.140 4.140 7 C -0.005 4.005 8 C -0.037 4.037 9 N -0.381 5.381 10 C -0.206 4.206 11 C -0.043 4.043 12 N -0.192 5.192 13 C 0.092 3.908 14 C -0.169 4.169 15 C -0.078 4.078 16 C -0.215 4.215 17 C 0.109 3.891 18 O -0.069 6.069 19 C -0.468 4.468 20 H 0.113 0.887 21 C -0.164 4.164 22 N -0.490 5.490 23 Si 0.767 3.233 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.190 1.190 27 C -0.257 4.257 28 C -0.043 4.043 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.147 0.853 39 H 0.176 0.824 40 H 0.151 0.849 41 H 0.173 0.827 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.082 0.918 45 H 0.150 0.850 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.880 -13.948 -10.290 18.648 hybrid contribution -1.569 -0.378 0.384 1.659 sum 5.311 -14.326 -9.906 18.209 Atomic orbital electron populations 1.23228 0.80998 1.03281 1.01296 1.87984 1.19875 1.29369 1.93769 1.22141 0.92163 0.83235 0.83801 1.87864 1.29933 1.81735 1.31506 1.23136 0.85308 0.99560 1.00053 1.19915 0.93998 0.99858 1.00219 1.20003 0.92522 0.93789 0.94144 1.20872 1.01186 0.94366 0.87315 1.59011 1.65516 1.09228 1.04335 1.21986 0.96509 1.02464 0.99614 1.22803 0.98680 0.90174 0.92674 1.67935 1.01640 1.21174 1.28451 1.19654 0.90147 0.91417 0.89548 1.17884 1.02285 1.03116 0.93605 1.20755 0.94293 0.94505 0.98216 1.20065 1.04710 1.04136 0.92630 1.19493 0.89131 0.88029 0.92423 1.83954 1.49132 1.48814 1.24991 1.21418 1.17036 1.28655 0.79727 0.88693 1.25344 0.94739 0.95593 1.00735 1.70032 1.16120 1.26561 1.36269 0.85676 0.78180 0.79322 0.80119 1.19672 1.20137 1.19007 1.21134 1.02324 1.01596 1.00691 1.20751 0.95027 0.95188 0.93289 0.89482 0.93169 0.92749 0.88980 0.92852 0.89232 0.93115 0.90972 0.91478 0.85315 0.82443 0.84874 0.82667 0.86450 0.86067 0.91755 0.85034 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.66 101.05 1.08 1.15 16 2 O -0.39 -5.00 7.80 -59.04 -0.46 -5.46 16 3 C 0.28 3.87 1.55 36.00 0.06 3.93 16 4 O -0.39 -4.80 6.82 -59.04 -0.40 -5.20 16 5 C 0.02 0.14 9.74 101.05 0.98 1.13 16 6 C -0.14 -2.10 5.24 -104.14 -0.55 -2.64 16 7 C 0.00 0.05 5.30 -104.36 -0.55 -0.50 16 8 C 0.09 1.09 6.38 -4.97 -0.03 1.06 16 9 N -0.85 -9.65 9.66 -11.40 -0.11 -9.76 16 10 C -0.19 -2.30 9.78 -39.37 -0.38 -2.68 16 11 C 0.11 1.51 11.18 -17.58 -0.20 1.32 16 12 N -0.48 -7.99 10.17 -9.78 -0.10 -8.09 16 13 C 0.23 3.89 6.35 -82.95 -0.53 3.36 16 14 C -0.17 -3.06 5.14 -104.86 -0.54 -3.60 16 15 C -0.06 -1.04 7.34 -39.27 -0.29 -1.33 16 16 C -0.20 -3.93 9.98 -39.45 -0.39 -4.32 16 17 C 0.16 3.81 6.65 -39.00 -0.26 3.55 16 18 O -0.17 -4.55 9.75 0.30 0.00 -4.55 16 19 C -0.39 -10.52 9.45 30.89 0.29 -10.23 16 20 H 0.10 2.36 5.24 -52.49 -0.28 2.08 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -24.11 13.67 55.48 0.76 -23.35 16 23 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.24 -5.06 9.13 -39.45 -0.36 -5.42 16 28 C -0.02 -0.45 9.65 -39.28 -0.38 -0.83 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.47 4.36 -51.93 -0.23 0.24 16 32 H 0.09 1.38 4.35 -51.92 -0.23 1.15 16 33 H 0.05 0.51 7.86 -51.93 -0.41 0.11 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.41 5.87 -51.93 -0.30 0.10 16 36 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 37 H 0.07 0.83 5.37 -51.93 -0.28 0.55 16 38 H 0.34 3.11 9.08 -39.30 -0.36 2.75 16 39 H 0.36 4.46 5.65 -39.29 -0.22 4.24 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.12 1.86 6.24 -52.49 -0.33 1.54 16 43 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 45 H 0.13 2.78 5.67 -52.49 -0.30 2.48 16 46 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -30.87 370.44 -7.33 -38.21 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.44 Total: 12.94 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.15 Total: -15.06 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.55 Total: -41.21 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.86 Total: -15.21 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.87 -7.33 -38.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.447 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds