Wall clock time and date at job start Wed Apr 1 2020 03:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86796 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47560 * 300.00155 * 3 2 1 6 6 H 1.48506 * 109.47148 * 60.00009 * 3 2 1 7 7 C 1.39948 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 197.97904 * 7 2 1 9 9 C 1.41023 * 119.99900 * 17.98908 * 7 2 1 10 10 C 1.40945 * 120.11683 * 24.68227 * 9 7 2 11 11 C 1.36224 * 119.87702 * 180.02562 * 10 9 7 12 12 C 1.39955 * 120.12357 * 359.97438 * 11 10 9 13 13 C 1.47974 * 119.88495 * 179.97438 * 12 11 10 14 14 C 1.36908 * 126.95466 * 180.02562 * 13 12 11 15 15 N 1.35092 * 105.99983 * 180.02562 * 14 13 12 16 16 C 1.46503 * 125.71041 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.46975 * 125.00183 * 16 15 14 18 18 C 1.52994 * 109.47156 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47156 * 179.97438 * 18 17 16 20 20 C 1.53009 * 109.46948 * 180.02562 * 19 18 17 21 21 H 1.09001 * 109.47437 * 54.99796 * 20 19 18 22 22 N 1.46900 * 109.46996 * 294.99778 * 20 19 18 23 23 C 1.50702 * 109.46729 * 175.00017 * 20 19 18 24 24 O 1.20825 * 119.99818 * 99.99970 * 23 20 19 25 25 O 1.34228 * 119.99924 * 279.99160 * 23 20 19 26 26 N 1.28624 * 108.57679 * 0.26555 * 15 14 13 27 27 N 1.28615 * 110.58546 * 359.55413 * 26 15 14 28 28 C 1.39965 * 120.23410 * 0.25930 * 12 11 10 29 29 C 1.36234 * 120.11516 * 359.48010 * 28 12 11 30 30 H 0.97005 * 119.99730 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.05632 * 0.02562 * 10 9 7 32 32 H 1.08005 * 119.93435 * 180.02562 * 11 10 9 33 33 H 1.07999 * 127.00401 * 0.02562 * 14 13 12 34 34 H 1.08999 * 109.46901 * 5.00042 * 16 15 14 35 35 H 1.08999 * 109.46532 * 245.00198 * 16 15 14 36 36 H 1.09000 * 109.46938 * 59.99973 * 17 16 15 37 37 H 1.08997 * 109.47083 * 299.99740 * 17 16 15 38 38 H 1.09006 * 109.47196 * 300.00021 * 18 17 16 39 39 H 1.09000 * 109.47405 * 59.99798 * 18 17 16 40 40 H 1.08997 * 109.47083 * 299.99914 * 19 18 17 41 41 H 1.08999 * 109.47421 * 60.00352 * 19 18 17 42 42 H 1.00901 * 110.99916 * 176.04735 * 22 20 19 43 43 H 1.00901 * 111.00292 * 300.00044 * 22 20 19 44 44 H 0.96699 * 116.99863 * 180.02562 * 25 23 20 45 45 H 1.07994 * 119.94094 * 179.71812 * 28 12 11 46 46 H 1.07997 * 120.05685 * 180.22790 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0081 -1.2120 0.0005 8 1 3.0485 -1.2347 0.2892 9 6 1.3546 -2.4036 -0.3761 10 6 0.2272 -2.3554 -1.2206 11 6 -0.4006 -3.5094 -1.5809 12 6 0.0723 -4.7413 -1.1146 13 6 -0.6140 -5.9916 -1.5089 14 6 -0.2780 -7.2665 -1.1399 15 7 -1.1797 -8.0766 -1.7364 16 6 -1.2195 -9.5372 -1.6293 17 6 -2.6016 -9.9753 -1.1407 18 6 -2.6433 -11.5006 -1.0296 19 6 -4.0252 -11.9387 -0.5403 20 6 -4.0667 -13.4641 -0.4286 21 1 -3.2516 -13.8040 0.2103 22 7 -3.9215 -14.0571 -1.7647 23 6 -5.3837 -13.8883 0.1689 24 8 -6.2701 -14.2904 -0.5469 25 8 -5.5717 -13.8195 1.4961 26 7 -1.9944 -7.3513 -2.4179 27 7 -1.6950 -6.1057 -2.3038 28 6 1.1886 -4.7946 -0.2719 29 6 1.8270 -3.6468 0.0903 30 1 -0.4850 0.8401 0.0004 31 1 -0.1383 -1.4052 -1.5812 32 1 -1.2643 -3.4736 -2.2283 33 1 0.5410 -7.5641 -0.5020 34 1 -0.4611 -9.8703 -0.9208 35 1 -1.0227 -9.9785 -2.6064 36 1 -3.3599 -9.6421 -1.8493 37 1 -2.7983 -9.5339 -0.1637 38 1 -2.4468 -11.9417 -2.0068 39 1 -1.8850 -11.8342 -0.3213 40 1 -4.2213 -11.4976 0.4369 41 1 -4.7839 -11.6051 -1.2483 42 1 -3.8812 -15.0638 -1.7110 43 1 -4.6659 -13.7571 -2.3763 44 1 -6.4328 -14.1029 1.8328 45 1 1.5467 -5.7474 0.0888 46 1 2.6904 -3.6893 0.7376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246058017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:31 Heat of formation + Delta-G solvation = -20.971959 kcal Electronic energy + Delta-G solvation = -27486.236576 eV Core-core repulsion = 23375.677429 eV Total energy + Delta-G solvation = -4110.559146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.94746 -41.48283 -39.37505 -37.91541 -37.23421 -36.20152 -35.62347 -33.70149 -32.87381 -31.47497 -30.57175 -30.20152 -27.63551 -27.12928 -25.04888 -23.88030 -23.16318 -22.23089 -21.89774 -21.59837 -21.08198 -19.28357 -19.24282 -18.32326 -17.83487 -17.38195 -17.28658 -17.15956 -16.57436 -16.33481 -15.93917 -15.83726 -15.49326 -15.27136 -14.86281 -14.47836 -14.32304 -14.20970 -13.87795 -13.72594 -13.57317 -13.25635 -13.00011 -12.88912 -12.76391 -12.71189 -12.58559 -12.47686 -12.28491 -12.14671 -12.03015 -11.85323 -11.74970 -11.51160 -11.44101 -11.19785 -11.16091 -10.84404 -10.40024 -10.08179 -9.43184 -8.91428 -8.64810 -6.30033 0.50145 0.89874 1.04146 1.24230 1.39393 1.43262 1.56509 1.63374 2.02925 2.09464 2.21185 2.83889 3.38472 3.52474 3.60326 3.81438 3.83787 3.89996 4.02728 4.16095 4.21196 4.32393 4.37637 4.42773 4.52177 4.55046 4.60150 4.62795 4.76229 4.89297 4.93216 5.04579 5.08447 5.16053 5.24864 5.36162 5.39623 5.44349 5.49610 5.51162 5.73105 5.87245 5.88577 6.02078 6.11771 6.25213 6.29023 6.33979 6.68498 6.86451 6.90634 7.02958 7.68840 8.29074 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029009 B = 0.001429 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.978530 B =19590.447891 C =19782.883174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.485 4.485 8 H 0.086 0.914 9 C 0.086 3.914 10 C -0.194 4.194 11 C -0.078 4.078 12 C -0.162 4.162 13 C 0.039 3.961 14 C -0.054 4.054 15 N -0.278 5.278 16 C 0.107 3.893 17 C -0.128 4.128 18 C -0.093 4.093 19 C -0.106 4.106 20 C 0.108 3.892 21 H 0.140 0.860 22 N -0.811 5.811 23 C 0.446 3.554 24 O -0.558 6.558 25 O -0.513 6.513 26 N -0.117 5.117 27 N -0.324 5.324 28 C -0.056 4.056 29 C -0.238 4.238 30 H 0.290 0.710 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.354 0.646 43 H 0.350 0.650 44 H 0.422 0.578 45 H 0.137 0.863 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -27.780 3.096 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.513 4.513 8 H 0.104 0.896 9 C 0.084 3.916 10 C -0.214 4.214 11 C -0.098 4.098 12 C -0.165 4.165 13 C -0.098 4.098 14 C -0.205 4.205 15 N -0.073 5.073 16 C -0.012 4.012 17 C -0.167 4.167 18 C -0.131 4.131 19 C -0.144 4.144 20 C -0.006 4.006 21 H 0.158 0.842 22 N -0.341 5.341 23 C 0.287 3.713 24 O -0.450 6.450 25 O -0.325 6.325 26 N -0.096 5.096 27 N -0.190 5.190 28 C -0.075 4.075 29 C -0.258 4.258 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.244 0.756 34 H 0.160 0.840 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.283 0.717 45 H 0.155 0.845 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.226 -27.299 1.797 27.682 hybrid contribution -1.084 0.406 0.913 1.474 sum -5.309 -26.893 2.710 27.546 Atomic orbital electron populations 1.69915 1.09348 1.30817 1.34263 1.26896 0.95427 1.04966 0.91097 0.85114 0.79654 0.75849 0.78852 1.17556 1.19221 1.18976 1.19946 0.98738 0.92324 1.40313 0.89616 1.18095 0.91269 0.93727 0.88546 1.20893 1.00929 0.96600 1.02981 1.20567 0.97909 0.92831 0.98476 1.17361 1.01120 0.88747 1.09261 1.20732 0.95238 0.94314 0.99524 1.23927 1.00937 0.89059 1.06530 1.47519 1.18875 1.10525 1.30344 1.22621 1.01688 0.70542 1.06309 1.21833 0.95074 0.98080 1.01705 1.21307 0.96230 0.91568 1.03974 1.21529 0.99348 0.90832 1.02723 1.21527 0.90490 0.97302 0.91303 0.84221 1.59224 1.52179 1.15110 1.07624 1.25840 0.92053 0.72911 0.80449 1.90724 1.46090 1.45558 1.62586 1.84572 1.44176 1.79284 1.24492 1.77937 1.17263 0.97306 1.17072 1.75256 1.15191 1.09318 1.19209 1.20559 0.93431 0.98102 0.95394 1.20888 1.04820 0.92565 1.07498 0.89958 0.88446 0.89372 0.75564 0.83952 0.86991 0.92322 0.91844 0.89580 0.88999 0.90082 0.92323 0.83249 0.83608 0.71659 0.84515 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.34 10.96 21.83 0.24 -43.10 16 2 C 0.03 1.61 5.13 85.26 0.44 2.05 16 3 Si 0.99 37.61 29.60 68.60 2.03 39.64 16 4 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.48 -25.63 9.03 23.37 0.21 -25.42 16 8 H 0.09 4.27 7.91 -2.91 -0.02 4.25 16 9 C 0.09 4.67 5.57 -21.27 -0.12 4.55 16 10 C -0.19 -10.75 8.63 22.46 0.19 -10.55 16 11 C -0.08 -4.07 9.64 22.22 0.21 -3.86 16 12 C -0.16 -7.41 5.90 -19.86 -0.12 -7.53 16 13 C 0.04 1.56 6.98 40.98 0.29 1.85 16 14 C -0.05 -1.55 10.96 83.88 0.92 -0.63 16 15 N -0.28 -7.27 3.43 -346.61 -1.19 -8.46 16 16 C 0.11 1.40 6.44 86.38 0.56 1.96 16 17 C -0.13 -1.63 5.34 30.59 0.16 -1.47 16 18 C -0.09 -0.62 5.10 30.59 0.16 -0.47 16 19 C -0.11 -0.89 4.84 30.60 0.15 -0.74 16 20 C 0.11 0.79 3.26 44.17 0.14 0.93 16 21 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 22 N -0.81 -6.09 8.44 -171.78 -1.45 -7.54 16 23 C 0.45 5.23 7.57 71.24 0.54 5.76 16 24 O -0.56 -10.42 17.01 21.97 0.37 -10.04 16 25 O -0.51 -4.27 13.42 -51.39 -0.69 -4.96 16 26 N -0.12 -4.21 12.88 37.02 0.48 -3.73 16 27 N -0.32 -14.04 12.15 -49.34 -0.60 -14.64 16 28 C -0.06 -2.32 9.51 22.22 0.21 -2.11 16 29 C -0.24 -11.17 9.73 22.46 0.22 -10.95 16 30 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 31 H 0.10 5.65 6.16 -2.91 -0.02 5.64 16 32 H 0.09 4.57 7.88 -2.91 -0.02 4.55 16 33 H 0.23 4.26 7.39 -2.91 -0.02 4.24 16 34 H 0.14 0.79 8.06 -2.39 -0.02 0.77 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.61 7.75 -2.38 -0.02 0.59 16 39 H 0.09 0.26 8.14 -2.39 -0.02 0.25 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.35 2.05 9.06 -89.69 -0.81 1.24 16 43 H 0.35 3.36 8.58 -89.69 -0.77 2.59 16 44 H 0.42 0.70 9.10 -74.06 -0.67 0.03 16 45 H 0.14 4.28 7.09 -2.91 -0.02 4.26 16 46 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -77.31 395.16 2.15 -75.17 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.21 Total: 24.30 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 4.16 Total: -46.63 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -2.52 Total: -77.48 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.32 Total: -15.00 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -77.31 2.15 -75.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246058017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.194 kcal (2) G-P(sol) polarization free energy of solvation -77.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds