Wall clock time and date at job start Wed Apr 1 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48502 * 109.47264 * 269.99870 * 3 2 1 5 5 H 1.48501 * 109.46989 * 29.99645 * 3 2 1 6 6 H 1.48499 * 109.47480 * 149.99628 * 3 2 1 7 7 C 1.38818 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99305 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00375 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47756 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47404 * 185.24487 * 11 10 9 13 13 H 1.08998 * 109.59089 * 59.91465 * 12 11 10 14 14 C 1.53201 * 109.58663 * 299.63181 * 12 11 10 15 15 C 1.53041 * 109.31452 * 185.57923 * 14 12 11 16 16 C 1.53040 * 109.53612 * 61.36569 * 15 14 12 17 17 C 1.53190 * 109.31406 * 298.63479 * 16 15 14 18 18 N 1.46925 * 109.58811 * 180.20265 * 12 11 10 19 19 C 1.34771 * 120.63013 * 353.39483 * 18 12 11 20 20 O 1.21559 * 120.00363 * 5.78604 * 19 18 12 21 21 C 1.47805 * 120.00192 * 185.78322 * 19 18 12 22 22 C 1.41161 * 118.94647 * 36.40448 * 21 19 18 23 23 C 1.35391 * 121.76133 * 179.97438 * 22 21 19 24 24 C 1.45299 * 119.10042 * 359.97438 * 23 22 21 25 25 N 1.30872 * 138.54002 * 179.97438 * 24 23 22 26 26 O 1.21491 * 109.07752 * 180.02562 * 25 24 23 27 27 N 1.21475 * 116.29709 * 0.02562 * 26 25 24 28 28 C 1.31068 * 109.08192 * 359.97438 * 27 26 25 29 29 C 1.37767 * 118.95287 * 216.13192 * 21 19 18 30 30 H 0.96999 * 120.00178 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00510 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47264 * 59.99161 * 10 9 7 33 33 H 1.09003 * 109.46892 * 299.99955 * 10 9 7 34 34 H 1.09008 * 109.46532 * 305.24314 * 11 10 9 35 35 H 1.08998 * 109.47513 * 65.23737 * 11 10 9 36 36 H 1.08998 * 109.49854 * 305.53606 * 14 12 11 37 37 H 1.08997 * 109.49071 * 65.62623 * 14 12 11 38 38 H 1.08997 * 109.45581 * 181.38647 * 15 14 12 39 39 H 1.08996 * 109.45664 * 301.34492 * 15 14 12 40 40 H 1.09003 * 109.49679 * 58.58743 * 16 15 14 41 41 H 1.08999 * 109.49508 * 178.65015 * 16 15 14 42 42 H 1.09002 * 109.58272 * 174.42387 * 17 16 15 43 43 H 1.09005 * 109.58582 * 294.70678 * 17 16 15 44 44 H 1.08000 * 119.11599 * 359.97438 * 22 21 19 45 45 H 1.08001 * 120.44912 * 179.97438 * 23 22 21 46 46 H 1.08002 * 120.14138 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 6 1.8240 -6.1407 0.1338 13 1 2.3880 -6.1455 1.0665 14 6 2.7850 -6.3015 -1.0484 15 6 3.4391 -7.6836 -0.9846 16 6 2.3613 -8.7652 -1.0878 17 6 1.3955 -8.6324 0.0939 18 7 0.8718 -7.2597 0.1283 19 6 -0.4562 -7.0313 0.1508 20 8 -0.8790 -5.8945 0.0696 21 6 -1.3988 -8.1632 0.2739 22 6 -1.0466 -9.2599 1.0899 23 6 -1.8667 -10.3261 1.2439 24 6 -3.1437 -10.3411 0.5510 25 7 -4.1824 -11.1274 0.4257 26 8 -4.9901 -10.6033 -0.3153 27 7 -4.6834 -9.5167 -0.7634 28 6 -3.5025 -9.1815 -0.3041 29 6 -2.5955 -8.1116 -0.4067 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6840 -3.7142 0.8920 33 1 2.6853 -3.7150 -0.8878 34 1 0.3760 -4.7103 0.8393 35 1 0.5015 -4.8165 -0.9330 36 1 2.2322 -6.2034 -1.9826 37 1 3.5551 -5.5318 -0.9983 38 1 4.1419 -7.7912 -1.8108 39 1 3.9712 -7.7902 -0.0393 40 1 1.8124 -8.6439 -2.0217 41 1 2.8300 -9.7490 -1.0664 42 1 0.5712 -9.3353 -0.0272 43 1 1.9238 -8.8453 1.0233 44 1 -0.0974 -9.2481 1.6051 45 1 -1.5757 -11.1541 1.8732 46 1 -2.8349 -7.2544 -1.0185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271575124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:25 Heat of formation + Delta-G solvation = 117.582018 kcal Electronic energy + Delta-G solvation = -29953.324252 eV Core-core repulsion = 25848.773257 eV Total energy + Delta-G solvation = -4104.550995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -47.80871 -42.01547 -39.51285 -38.40484 -36.97896 -35.95413 -35.11732 -34.15853 -33.59456 -32.36834 -32.22934 -29.31073 -27.90399 -26.41677 -25.95801 -25.33390 -24.07707 -22.53621 -22.37677 -22.08620 -20.89119 -20.09512 -19.86530 -19.15007 -19.09996 -17.62416 -17.26369 -16.73724 -16.54573 -16.16011 -15.79004 -15.56685 -15.52974 -15.43357 -15.17573 -14.88638 -14.62054 -14.30795 -14.13596 -14.04537 -14.00762 -13.75672 -13.27983 -13.02171 -12.99861 -12.91399 -12.75469 -12.74960 -12.41601 -12.34231 -12.12609 -11.90398 -11.86614 -11.75193 -11.54398 -11.39560 -10.93589 -10.90302 -10.23396 -9.79045 -9.55731 -9.01203 -7.95186 -5.25672 -1.27579 -0.20738 0.66244 1.43797 1.44710 1.48385 1.56841 1.65731 2.01216 2.21340 2.26154 2.54781 2.55394 3.19514 3.37398 3.42799 3.61550 3.68008 3.84964 3.94356 3.95720 4.04294 4.12626 4.14617 4.28591 4.38825 4.45999 4.52265 4.58005 4.61268 4.73706 4.74795 4.78956 4.82516 4.92004 4.95040 4.98205 5.12654 5.19999 5.22951 5.28256 5.40213 5.41969 5.49577 5.53416 5.68371 6.25869 6.32295 7.04146 7.25704 7.30623 8.08640 8.31868 9.29064 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.002564 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.917603 B =10916.131849 C =12644.616361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.147 3.853 11 C -0.094 4.094 12 C 0.159 3.841 13 H 0.095 0.905 14 C -0.132 4.132 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.084 3.916 18 N -0.593 5.593 19 C 0.544 3.456 20 O -0.556 6.556 21 C -0.080 4.080 22 C -0.071 4.071 23 C -0.041 4.041 24 C 0.022 3.978 25 N -0.349 5.349 26 O 0.377 5.623 27 N -0.351 5.351 28 C 0.000 4.000 29 C -0.027 4.027 30 H 0.251 0.749 31 H 0.369 0.631 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.192 0.808 45 H 0.198 0.802 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -32.119 2.238 32.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.020 3.980 11 C -0.132 4.132 12 C 0.056 3.944 13 H 0.113 0.887 14 C -0.170 4.170 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.036 4.036 18 N -0.325 5.325 19 C 0.332 3.668 20 O -0.435 6.435 21 C -0.087 4.087 22 C -0.092 4.092 23 C -0.061 4.061 24 C -0.133 4.133 25 N -0.072 5.072 26 O 0.139 5.861 27 N -0.070 5.070 28 C -0.152 4.152 29 C -0.049 4.049 30 H 0.059 0.941 31 H 0.200 0.800 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.209 0.791 45 H 0.215 0.785 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.622 -31.937 1.911 32.101 hybrid contribution 0.008 2.128 -0.318 2.152 sum 2.629 -29.809 1.592 29.967 Atomic orbital electron populations 1.69874 1.06957 1.26085 1.59609 1.25719 0.96455 1.01577 1.03740 0.85038 0.77708 0.78876 0.77524 1.21264 1.22174 1.18904 1.19713 0.91611 0.85296 1.41157 0.90204 1.42662 1.05586 1.01611 1.89346 1.20995 0.94123 0.85268 0.97571 1.21939 0.96256 0.92875 1.02147 1.21230 0.89221 0.83976 0.99971 0.88748 1.22026 0.98345 0.99697 0.96941 1.21536 0.97796 0.92370 1.03583 1.21951 0.96757 1.00653 0.97750 1.22678 0.99247 0.80566 1.01099 1.48125 1.03922 1.08903 1.71569 1.18614 0.83064 0.88073 0.77043 1.91018 1.78519 1.23823 1.50170 1.19861 0.93882 0.95833 0.99173 1.21501 1.01538 0.89959 0.96209 1.21355 0.85967 1.00868 0.97926 1.24629 0.98148 0.90074 1.00461 1.75166 1.01169 1.20611 1.10271 1.85411 1.37837 1.21852 1.40967 1.75270 1.14391 0.99192 1.18145 1.22743 0.92934 0.99494 1.00017 1.20076 0.90348 0.95339 0.99091 0.94057 0.79992 0.95932 0.95863 0.92369 0.93622 0.93417 0.90640 0.90878 0.89879 0.93000 0.87363 0.87155 0.87203 0.79128 0.78538 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.82 13.06 21.65 0.28 -63.53 16 2 C -0.08 -5.06 5.50 84.86 0.47 -4.60 16 3 Si 0.98 48.02 29.55 68.60 2.03 50.05 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.25 -14.62 9.99 84.04 0.84 -13.78 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 9 N -0.75 -42.13 5.60 -343.47 -1.92 -44.06 16 10 C 0.15 6.31 5.77 86.38 0.50 6.81 16 11 C -0.09 -3.49 3.25 30.59 0.10 -3.39 16 12 C 0.16 3.85 3.01 44.98 0.14 3.98 16 13 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.13 -2.75 4.86 30.68 0.15 -2.60 16 15 C -0.12 -1.38 5.88 30.62 0.18 -1.20 16 16 C -0.13 -1.15 6.08 30.67 0.19 -0.97 16 17 C 0.08 0.70 4.72 86.35 0.41 1.10 16 18 N -0.59 -11.45 2.98 -798.37 -2.38 -13.83 16 19 C 0.54 13.79 7.24 86.78 0.63 14.41 16 20 O -0.56 -20.66 12.14 -3.90 -0.05 -20.70 16 21 C -0.08 -1.49 5.26 -20.14 -0.11 -1.60 16 22 C -0.07 -0.65 7.15 22.33 0.16 -0.49 16 23 C -0.04 -0.35 10.27 23.43 0.24 -0.11 16 24 C 0.02 0.36 7.94 43.83 0.35 0.71 16 25 N -0.35 -6.49 12.28 -54.91 -0.67 -7.16 16 26 O 0.38 7.58 11.67 139.31 1.63 9.20 16 27 N -0.35 -8.10 12.29 -57.38 -0.71 -8.81 16 28 C 0.00 0.01 7.75 42.58 0.33 0.34 16 29 C -0.03 -0.61 9.59 22.74 0.22 -0.39 16 30 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.37 22.75 7.67 -92.71 -0.71 22.04 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.02 0.97 6.87 -2.39 -0.02 0.96 16 34 H 0.06 2.48 6.47 -2.38 -0.02 2.46 16 35 H 0.05 1.93 7.01 -2.39 -0.02 1.92 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.69 6.89 -2.39 -0.02 1.68 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.11 0.56 4.53 -2.39 -0.01 0.54 16 43 H 0.11 0.27 8.01 -2.38 -0.02 0.25 16 44 H 0.19 0.42 6.02 -2.91 -0.02 0.40 16 45 H 0.20 0.06 8.06 -2.91 -0.02 0.04 16 46 H 0.14 3.52 7.93 -2.91 -0.02 3.50 16 Total: -1.00 -82.25 367.75 3.31 -78.94 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.32 Total: 21.66 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.78 Total: -1.76 kcal Atomic # 7 Polarization: -131.99 SS G_CDS: -5.40 Total: -137.39 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 1.58 Total: -11.50 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -82.25 3.31 -78.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271575124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.522 kcal (2) G-P(sol) polarization free energy of solvation -82.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds