Wall clock time and date at job start Wed Apr 1 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48498 * 109.47081 * 274.94801 * 3 2 1 5 5 H 1.48499 * 109.47136 * 34.94364 * 3 2 1 6 6 H 1.48495 * 109.47411 * 154.94181 * 3 2 1 7 7 C 1.38806 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99807 * 340.01623 * 7 2 1 9 9 N 1.36932 * 120.00484 * 160.02366 * 7 2 1 10 10 C 1.46930 * 120.63492 * 152.59448 * 9 7 2 11 11 C 1.53192 * 108.77548 * 126.39049 * 10 9 7 12 12 C 1.53034 * 109.31437 * 54.63691 * 11 10 9 13 13 C 1.53047 * 109.53591 * 298.63225 * 12 11 10 14 14 C 1.53002 * 109.49790 * 181.35352 * 13 12 11 15 15 O 1.42898 * 109.47167 * 174.55654 * 14 13 12 16 16 N 1.46507 * 109.49711 * 301.41529 * 13 12 11 17 17 C 1.34775 * 120.00091 * 301.36625 * 16 13 12 18 18 O 1.21641 * 119.99998 * 354.86631 * 17 16 13 19 19 C 1.47257 * 120.00091 * 174.86324 * 17 16 13 20 20 C 1.38930 * 120.90440 * 0.02562 * 19 17 16 21 21 C 1.39768 * 119.18987 * 179.97438 * 20 19 17 22 22 C 1.35074 * 121.27605 * 0.02562 * 21 20 19 23 23 N 1.36225 * 121.76580 * 0.24424 * 22 21 20 24 24 N 1.40085 * 132.48249 * 180.38776 * 23 22 21 25 25 C 1.31353 * 108.88473 * 179.56203 * 24 23 22 26 26 C 1.38880 * 108.94533 * 359.76998 * 25 24 23 27 27 C 1.37186 * 120.19292 * 359.49137 * 23 22 21 28 28 C 1.46925 * 120.62699 * 332.58786 * 9 7 2 29 29 H 0.96997 * 119.99753 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58635 * 6.60020 * 10 9 7 31 31 H 1.09001 * 109.58155 * 246.17417 * 10 9 7 32 32 H 1.08998 * 109.49334 * 294.67894 * 11 10 9 33 33 H 1.09001 * 109.49400 * 174.58633 * 11 10 9 34 34 H 1.09000 * 109.45786 * 178.61422 * 12 11 10 35 35 H 1.08997 * 109.46294 * 58.65340 * 12 11 10 36 36 H 1.09000 * 109.46896 * 294.55845 * 14 13 12 37 37 H 1.09001 * 109.47009 * 54.55346 * 14 13 12 38 38 H 0.96698 * 113.99535 * 179.97438 * 15 14 13 39 39 H 0.96996 * 119.99936 * 121.36700 * 16 13 12 40 40 H 1.07999 * 120.40488 * 359.95562 * 20 19 17 41 41 H 1.08001 * 119.36180 * 179.97438 * 21 20 19 42 42 H 1.07996 * 119.11282 * 179.97438 * 22 21 20 43 43 H 1.07992 * 125.52790 * 179.77536 * 25 24 23 44 44 H 1.07998 * 126.21926 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.58693 * 113.82713 * 28 9 7 46 46 H 1.08995 * 109.59004 * 353.39640 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3932 2.1068 -1.3948 5 1 1.5038 2.6203 0.8019 6 1 3.5961 1.4124 0.5930 7 6 2.0104 -1.2021 -0.0005 8 1 1.5191 -2.1095 0.3187 9 7 3.3179 -1.2376 -0.4057 10 6 4.2342 -2.2634 0.1110 11 6 4.8862 -2.9838 -1.0734 12 6 5.5491 -1.9532 -1.9900 13 6 4.4877 -0.9936 -2.5332 14 6 5.1462 0.0156 -3.4760 15 8 4.1395 0.8299 -4.0805 16 7 3.4698 -1.7531 -3.2637 17 6 3.8242 -2.5132 -4.3187 18 8 4.9715 -2.4963 -4.7225 19 6 2.8224 -3.3642 -4.9827 20 6 1.5068 -3.3976 -4.5375 21 6 0.5854 -4.2178 -5.1946 22 6 0.9504 -4.9764 -6.2509 23 7 2.2286 -4.9827 -6.7218 24 7 2.8428 -5.6612 -7.7824 25 6 4.1094 -5.3165 -7.8309 26 6 4.3675 -4.4038 -6.8165 27 6 3.1858 -4.1982 -6.1300 28 6 3.8312 -0.2507 -1.3654 29 1 -0.4849 0.8400 0.0004 30 1 3.6772 -2.9809 0.7135 31 1 5.0047 -1.7914 0.7207 32 1 4.1251 -3.5301 -1.6305 33 1 5.6390 -3.6809 -0.7054 34 1 6.0349 -2.4652 -2.8206 35 1 6.2927 -1.3904 -1.4258 36 1 5.8328 0.6461 -2.9111 37 1 5.6967 -0.5172 -4.2514 38 1 4.4858 1.4943 -4.6918 39 1 2.5410 -1.7089 -2.9879 40 1 1.1999 -2.7973 -3.6937 41 1 -0.4379 -4.2462 -4.8506 42 1 0.2098 -5.5977 -6.7324 43 1 4.8327 -5.6832 -8.5441 44 1 5.3187 -3.9389 -6.6031 45 1 4.5689 0.3855 -0.8762 46 1 3.0083 0.3598 -1.7372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271973639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:48 Heat of formation + Delta-G solvation = 61.269362 kcal Electronic energy + Delta-G solvation = -31798.836773 eV Core-core repulsion = 27691.843878 eV Total energy + Delta-G solvation = -4106.992895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.90467 -40.14277 -37.76835 -36.96802 -36.11758 -33.88933 -33.10522 -32.39659 -30.79878 -30.65717 -30.30673 -28.28716 -25.59230 -25.34979 -24.74942 -22.68169 -22.55874 -22.01783 -20.98115 -20.21207 -18.92987 -17.76426 -17.23051 -16.99408 -16.88863 -16.45007 -15.78103 -15.64349 -15.29173 -15.02401 -14.77770 -14.43257 -13.97523 -13.87913 -13.74966 -13.49803 -13.38448 -13.11457 -12.87405 -12.47064 -12.36901 -12.18538 -12.09187 -11.88128 -11.80574 -11.62147 -11.28182 -10.83181 -10.75018 -10.54877 -10.33237 -10.30946 -10.12764 -9.85032 -9.82954 -9.54167 -9.41297 -9.20603 -8.71109 -8.55434 -7.63398 -7.07163 -6.04719 -3.41823 0.35348 1.10112 2.15382 2.70778 2.81536 3.32458 3.42321 3.45528 3.46130 3.71912 4.21151 4.40671 4.44910 4.47211 4.64274 4.76916 4.84367 4.93038 5.17831 5.26886 5.34615 5.43697 5.46594 5.50997 5.58915 5.62962 5.71882 5.76720 5.84920 5.94189 6.06480 6.09480 6.13023 6.18718 6.23933 6.28834 6.34127 6.50614 6.57786 6.62492 6.68155 6.78735 6.85417 6.99113 7.49518 7.84634 7.88767 7.99065 8.23307 8.56331 8.83844 9.62265 10.00064 11.10394 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.004111 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.253855 B = 6808.844605 C = 7490.201862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.029 3.971 3 Si 0.874 3.126 4 H -0.281 1.281 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.088 0.912 9 N -0.604 5.604 10 C 0.146 3.854 11 C -0.130 4.130 12 C -0.122 4.122 13 C 0.169 3.831 14 C 0.063 3.937 15 O -0.563 6.563 16 N -0.681 5.681 17 C 0.570 3.430 18 O -0.543 6.543 19 C -0.126 4.126 20 C -0.033 4.033 21 C -0.170 4.170 22 C 0.129 3.871 23 N -0.286 5.286 24 N -0.324 5.324 25 C 0.074 3.926 26 C -0.260 4.260 27 C 0.132 3.868 28 C 0.127 3.873 29 H 0.263 0.737 30 H 0.063 0.937 31 H 0.023 0.977 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.371 0.629 39 H 0.410 0.590 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.192 0.808 44 H 0.165 0.835 45 H 0.040 0.960 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -6.393 -11.025 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.704 3.296 4 H -0.208 1.208 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.105 0.895 9 N -0.328 5.328 10 C 0.020 3.980 11 C -0.169 4.169 12 C -0.160 4.160 13 C 0.080 3.920 14 C -0.016 4.016 15 O -0.366 6.366 16 N -0.331 5.331 17 C 0.356 3.644 18 O -0.423 6.423 19 C -0.131 4.131 20 C -0.057 4.057 21 C -0.192 4.192 22 C 0.004 3.996 23 N -0.053 5.053 24 N -0.146 5.146 25 C -0.104 4.104 26 C -0.289 4.289 27 C 0.013 3.987 28 C 0.001 3.999 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.217 0.783 39 H 0.247 0.753 40 H 0.172 0.828 41 H 0.179 0.821 42 H 0.185 0.815 43 H 0.209 0.791 44 H 0.182 0.818 45 H 0.057 0.943 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.936 -7.474 -11.501 14.946 hybrid contribution 0.888 1.904 0.223 2.112 sum 6.824 -5.571 -11.278 14.311 Atomic orbital electron populations 1.69807 1.05663 1.26664 1.52566 1.25266 0.95210 0.97446 0.99169 0.87068 0.80109 0.84961 0.77472 1.20830 1.23191 1.19597 1.18910 0.84479 0.94726 1.41261 0.89464 1.44375 1.08512 1.32932 1.46941 1.20996 0.92457 0.91240 0.93286 1.21923 0.99442 0.97462 0.98087 1.21760 0.96999 0.97588 0.99699 1.20969 0.88812 0.90607 0.91578 1.22681 0.90282 0.92219 0.96439 1.86545 1.35456 1.51165 1.63484 1.45660 1.12310 1.45593 1.29525 1.17491 0.87182 0.79596 0.80097 1.90658 1.19869 1.67037 1.64743 1.20574 0.94710 1.01024 0.96816 1.21989 0.91252 0.94818 0.97628 1.20728 1.02028 0.99541 0.96915 1.21497 0.83633 0.99081 0.95408 1.46205 1.07455 1.29595 1.22043 1.77808 1.09193 1.21640 1.06003 1.23905 0.93203 0.95354 0.97901 1.21477 0.98944 1.07832 1.00661 1.20172 0.90071 0.93929 0.94504 1.21610 0.98253 0.91882 0.88138 0.92679 0.91836 0.95909 0.92064 0.92564 0.90423 0.91697 0.93722 0.91367 0.78341 0.75250 0.82815 0.82089 0.81508 0.79140 0.81798 0.94263 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 13.97 55.49 0.78 -25.10 16 2 C 0.03 0.77 5.24 -17.43 -0.09 0.68 16 3 Si 0.87 21.40 24.34 -169.99 -4.14 17.26 16 4 H -0.28 -6.81 6.71 56.52 0.38 -6.44 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.53 6.43 56.52 0.36 -6.16 16 7 C -0.27 -6.78 10.04 -15.06 -0.15 -6.93 16 8 H 0.09 2.38 8.06 -52.48 -0.42 1.96 16 9 N -0.60 -13.15 2.68 -172.32 -0.46 -13.61 16 10 C 0.15 2.70 6.52 -3.71 -0.02 2.68 16 11 C -0.13 -2.11 5.93 -26.61 -0.16 -2.27 16 12 C -0.12 -1.97 4.45 -26.69 -0.12 -2.09 16 13 C 0.17 2.96 0.45 -131.69 -0.06 2.90 16 14 C 0.06 1.01 5.65 37.16 0.21 1.22 16 15 O -0.56 -9.21 13.08 -35.23 -0.46 -9.67 16 16 N -0.68 -11.81 3.89 -48.60 -0.19 -12.00 16 17 C 0.57 9.65 7.16 -12.60 -0.09 9.56 16 18 O -0.54 -9.82 11.51 5.24 0.06 -9.76 16 19 C -0.13 -1.94 6.06 -102.68 -0.62 -2.56 16 20 C -0.03 -0.44 9.63 -38.75 -0.37 -0.81 16 21 C -0.17 -1.79 9.90 -40.14 -0.40 -2.18 16 22 C 0.13 1.42 11.12 -16.73 -0.19 1.24 16 23 N -0.29 -4.05 3.89 -9.42 -0.04 -4.09 16 24 N -0.32 -4.61 12.66 30.50 0.39 -4.23 16 25 C 0.07 0.93 11.95 -17.52 -0.21 0.72 16 26 C -0.26 -3.80 10.18 -39.36 -0.40 -4.20 16 27 C 0.13 2.05 6.85 -82.19 -0.56 1.49 16 28 C 0.13 2.63 2.74 -3.71 -0.01 2.62 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.06 7.51 -51.93 -0.39 0.67 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.28 6.29 -51.93 -0.33 0.96 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.10 6.28 -51.93 -0.33 0.77 16 38 H 0.37 4.25 9.12 45.56 0.42 4.67 16 39 H 0.41 7.47 6.59 -40.82 -0.27 7.20 16 40 H 0.15 2.02 6.50 -52.49 -0.34 1.68 16 41 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.16 2.40 7.10 -52.49 -0.37 2.03 16 45 H 0.04 0.82 6.97 -51.93 -0.36 0.46 16 46 H 0.09 2.00 4.36 -51.93 -0.23 1.77 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -32.73 361.89 -7.04 -39.77 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -5.19 Total: 13.91 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.25 Total: 2.05 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.47 Total: -59.03 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.40 Total: -19.42 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.73 -7.04 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271973639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.044 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds