Wall clock time and date at job start Wed Apr 1 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48498 * 109.47081 * 274.94801 * 3 2 1 5 5 H 1.48499 * 109.47136 * 34.94364 * 3 2 1 6 6 H 1.48495 * 109.47411 * 154.94181 * 3 2 1 7 7 C 1.38806 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99807 * 340.01623 * 7 2 1 9 9 N 1.36932 * 120.00484 * 160.02366 * 7 2 1 10 10 C 1.46930 * 120.63492 * 152.59448 * 9 7 2 11 11 C 1.53192 * 108.77548 * 126.39049 * 10 9 7 12 12 C 1.53034 * 109.31437 * 54.63691 * 11 10 9 13 13 C 1.53047 * 109.53591 * 298.63225 * 12 11 10 14 14 C 1.53002 * 109.49790 * 181.35352 * 13 12 11 15 15 O 1.42898 * 109.47167 * 174.55654 * 14 13 12 16 16 N 1.46507 * 109.49711 * 301.41529 * 13 12 11 17 17 C 1.34775 * 120.00091 * 301.36625 * 16 13 12 18 18 O 1.21641 * 119.99998 * 354.86631 * 17 16 13 19 19 C 1.47257 * 120.00091 * 174.86324 * 17 16 13 20 20 C 1.38930 * 120.90440 * 0.02562 * 19 17 16 21 21 C 1.39768 * 119.18987 * 179.97438 * 20 19 17 22 22 C 1.35074 * 121.27605 * 0.02562 * 21 20 19 23 23 N 1.36225 * 121.76580 * 0.24424 * 22 21 20 24 24 N 1.40085 * 132.48249 * 180.38776 * 23 22 21 25 25 C 1.31353 * 108.88473 * 179.56203 * 24 23 22 26 26 C 1.38880 * 108.94533 * 359.76998 * 25 24 23 27 27 C 1.37186 * 120.19292 * 359.49137 * 23 22 21 28 28 C 1.46925 * 120.62699 * 332.58786 * 9 7 2 29 29 H 0.96997 * 119.99753 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58635 * 6.60020 * 10 9 7 31 31 H 1.09001 * 109.58155 * 246.17417 * 10 9 7 32 32 H 1.08998 * 109.49334 * 294.67894 * 11 10 9 33 33 H 1.09001 * 109.49400 * 174.58633 * 11 10 9 34 34 H 1.09000 * 109.45786 * 178.61422 * 12 11 10 35 35 H 1.08997 * 109.46294 * 58.65340 * 12 11 10 36 36 H 1.09000 * 109.46896 * 294.55845 * 14 13 12 37 37 H 1.09001 * 109.47009 * 54.55346 * 14 13 12 38 38 H 0.96698 * 113.99535 * 179.97438 * 15 14 13 39 39 H 0.96996 * 119.99936 * 121.36700 * 16 13 12 40 40 H 1.07999 * 120.40488 * 359.95562 * 20 19 17 41 41 H 1.08001 * 119.36180 * 179.97438 * 21 20 19 42 42 H 1.07996 * 119.11282 * 179.97438 * 22 21 20 43 43 H 1.07992 * 125.52790 * 179.77536 * 25 24 23 44 44 H 1.07998 * 126.21926 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.58693 * 113.82713 * 28 9 7 46 46 H 1.08995 * 109.59004 * 353.39640 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3932 2.1068 -1.3948 5 1 1.5038 2.6203 0.8019 6 1 3.5961 1.4124 0.5930 7 6 2.0104 -1.2021 -0.0005 8 1 1.5191 -2.1095 0.3187 9 7 3.3179 -1.2376 -0.4057 10 6 4.2342 -2.2634 0.1110 11 6 4.8862 -2.9838 -1.0734 12 6 5.5491 -1.9532 -1.9900 13 6 4.4877 -0.9936 -2.5332 14 6 5.1462 0.0156 -3.4760 15 8 4.1395 0.8299 -4.0805 16 7 3.4698 -1.7531 -3.2637 17 6 3.8242 -2.5132 -4.3187 18 8 4.9715 -2.4963 -4.7225 19 6 2.8224 -3.3642 -4.9827 20 6 1.5068 -3.3976 -4.5375 21 6 0.5854 -4.2178 -5.1946 22 6 0.9504 -4.9764 -6.2509 23 7 2.2286 -4.9827 -6.7218 24 7 2.8428 -5.6612 -7.7824 25 6 4.1094 -5.3165 -7.8309 26 6 4.3675 -4.4038 -6.8165 27 6 3.1858 -4.1982 -6.1300 28 6 3.8312 -0.2507 -1.3654 29 1 -0.4849 0.8400 0.0004 30 1 3.6772 -2.9809 0.7135 31 1 5.0047 -1.7914 0.7207 32 1 4.1251 -3.5301 -1.6305 33 1 5.6390 -3.6809 -0.7054 34 1 6.0349 -2.4652 -2.8206 35 1 6.2927 -1.3904 -1.4258 36 1 5.8328 0.6461 -2.9111 37 1 5.6967 -0.5172 -4.2514 38 1 4.4858 1.4943 -4.6918 39 1 2.5410 -1.7089 -2.9879 40 1 1.1999 -2.7973 -3.6937 41 1 -0.4379 -4.2462 -4.8506 42 1 0.2098 -5.5977 -6.7324 43 1 4.8327 -5.6832 -8.5441 44 1 5.3187 -3.9389 -6.6031 45 1 4.5689 0.3855 -0.8762 46 1 3.0083 0.3598 -1.7372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271973639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:47 Heat of formation + Delta-G solvation = 37.196159 kcal Electronic energy + Delta-G solvation = -31799.880665 eV Core-core repulsion = 27691.843878 eV Total energy + Delta-G solvation = -4108.036787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.92886 -41.48505 -39.13306 -38.01612 -37.45312 -35.44630 -34.45874 -33.77023 -32.53362 -31.70909 -31.61312 -29.35409 -27.26946 -26.85895 -25.81649 -24.19803 -23.68852 -23.16910 -22.23850 -21.61273 -20.28838 -19.17412 -18.55849 -18.30387 -18.18372 -17.59238 -17.19840 -16.71643 -16.54072 -16.34882 -16.10993 -15.75342 -15.51536 -15.37700 -15.01933 -14.89048 -14.74474 -14.41533 -14.10748 -14.03242 -13.80989 -13.50322 -13.30173 -13.22639 -13.10045 -12.80544 -12.75307 -12.44757 -12.17337 -11.90387 -11.88029 -11.75524 -11.49331 -11.41322 -11.33093 -11.11578 -10.73692 -10.44963 -10.41745 -9.91616 -8.91229 -8.66677 -8.12918 -5.44575 -0.67109 0.08139 1.18888 1.36597 1.43815 1.49695 1.67946 1.73460 2.17748 2.44365 2.56359 3.06542 3.24650 3.27286 3.35884 3.37611 3.63345 3.79998 3.88577 3.97622 4.00604 4.18594 4.25342 4.35284 4.43545 4.48348 4.50696 4.57626 4.64895 4.72380 4.77577 4.81903 4.89021 4.93220 4.97215 5.04366 5.10610 5.13597 5.23772 5.28068 5.45962 5.59509 5.64135 5.81160 5.90151 6.17462 6.48994 6.62948 6.86979 6.92824 7.24911 7.64382 8.05897 9.05492 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.004111 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.253855 B = 6808.844605 C = 7490.201862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.020 4.020 3 Si 0.927 3.073 4 H -0.280 1.280 5 H -0.317 1.317 6 H -0.261 1.261 7 C -0.242 4.242 8 H 0.062 0.938 9 N -0.613 5.613 10 C 0.143 3.857 11 C -0.120 4.120 12 C -0.117 4.117 13 C 0.167 3.833 14 C 0.067 3.933 15 O -0.584 6.584 16 N -0.684 5.684 17 C 0.571 3.429 18 O -0.559 6.559 19 C -0.161 4.161 20 C -0.023 4.023 21 C -0.170 4.170 22 C 0.135 3.865 23 N -0.295 5.295 24 N -0.340 5.340 25 C 0.085 3.915 26 C -0.282 4.282 27 C 0.115 3.885 28 C 0.131 3.869 29 H 0.260 0.740 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.391 0.609 39 H 0.403 0.597 40 H 0.149 0.851 41 H 0.197 0.803 42 H 0.206 0.794 43 H 0.230 0.770 44 H 0.157 0.843 45 H 0.044 0.956 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 -7.232 -12.003 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.215 4.215 3 Si 0.757 3.243 4 H -0.207 1.207 5 H -0.246 1.246 6 H -0.186 1.186 7 C -0.371 4.371 8 H 0.080 0.920 9 N -0.337 5.337 10 C 0.019 3.981 11 C -0.159 4.159 12 C -0.155 4.155 13 C 0.079 3.921 14 C -0.012 4.012 15 O -0.391 6.391 16 N -0.334 5.334 17 C 0.359 3.641 18 O -0.440 6.440 19 C -0.166 4.166 20 C -0.046 4.046 21 C -0.191 4.191 22 C 0.010 3.990 23 N -0.062 5.062 24 N -0.163 5.163 25 C -0.092 4.092 26 C -0.311 4.311 27 C -0.004 4.004 28 C 0.005 3.995 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.240 0.760 39 H 0.239 0.761 40 H 0.166 0.834 41 H 0.214 0.786 42 H 0.222 0.778 43 H 0.246 0.754 44 H 0.174 0.826 45 H 0.062 0.938 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.071 -8.317 -12.496 16.593 hybrid contribution 0.516 2.062 0.498 2.183 sum 7.588 -6.255 -11.999 15.514 Atomic orbital electron populations 1.69911 1.06960 1.26884 1.55466 1.25704 0.95609 0.99886 1.00343 0.86212 0.79167 0.81762 0.77132 1.20689 1.24628 1.18587 1.18812 0.85933 0.93467 1.38884 0.92014 1.44446 1.07792 1.33850 1.47616 1.21145 0.92162 0.90507 0.94331 1.21813 0.99545 0.97576 0.96930 1.21735 0.96748 0.97311 0.99685 1.20960 0.88989 0.91204 0.90962 1.22630 0.90102 0.92179 0.96265 1.86498 1.36390 1.51958 1.64263 1.45651 1.11827 1.45993 1.29884 1.17671 0.87363 0.79345 0.79693 1.90631 1.20572 1.67661 1.65173 1.20452 0.95270 1.02674 0.98197 1.22142 0.91062 0.94348 0.97059 1.21108 1.03032 0.98518 0.96439 1.22255 0.83202 0.98585 0.94938 1.46483 1.08219 1.29448 1.22057 1.77760 1.09911 1.22244 1.06402 1.24476 0.93253 0.93961 0.97529 1.21563 0.98685 1.09017 1.01806 1.20332 0.90962 0.94362 0.94767 1.21511 0.97442 0.91684 0.88869 0.93108 0.92257 0.94435 0.93587 0.89866 0.90560 0.89928 0.91753 0.91528 0.76023 0.76112 0.83386 0.78571 0.77769 0.75412 0.82583 0.93823 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.50 13.97 21.65 0.30 -55.20 16 2 C -0.02 -1.07 5.24 84.86 0.45 -0.63 16 3 Si 0.93 44.67 24.34 68.60 1.67 46.34 16 4 H -0.28 -13.28 6.71 99.48 0.67 -12.62 16 5 H -0.32 -15.82 7.11 99.48 0.71 -15.11 16 6 H -0.26 -12.01 6.43 99.48 0.64 -11.37 16 7 C -0.24 -12.46 10.04 84.03 0.84 -11.61 16 8 H 0.06 3.46 8.06 -2.90 -0.02 3.44 16 9 N -0.61 -26.28 2.68 -699.10 -1.87 -28.16 16 10 C 0.14 5.08 6.52 86.36 0.56 5.65 16 11 C -0.12 -3.68 5.93 30.67 0.18 -3.49 16 12 C -0.12 -3.53 4.45 30.62 0.14 -3.39 16 13 C 0.17 5.68 0.45 3.68 0.00 5.68 16 14 C 0.07 2.05 5.65 71.98 0.41 2.46 16 15 O -0.58 -18.55 13.08 -148.98 -1.95 -20.50 16 16 N -0.68 -23.77 3.89 -425.91 -1.65 -25.42 16 17 C 0.57 19.46 7.16 86.61 0.62 20.08 16 18 O -0.56 -20.23 11.51 -4.16 -0.05 -20.27 16 19 C -0.16 -4.97 6.06 -18.61 -0.11 -5.08 16 20 C -0.02 -0.58 9.63 22.81 0.22 -0.37 16 21 C -0.17 -3.21 9.90 21.91 0.22 -3.00 16 22 C 0.13 2.64 11.12 83.28 0.93 3.57 16 23 N -0.29 -7.93 3.89 -183.70 -0.71 -8.65 16 24 N -0.34 -9.12 12.66 -57.40 -0.73 -9.85 16 25 C 0.09 2.02 11.95 84.92 1.01 3.03 16 26 C -0.28 -8.14 10.18 22.42 0.23 -7.92 16 27 C 0.11 3.52 6.85 40.43 0.28 3.80 16 28 C 0.13 5.25 2.74 86.36 0.24 5.48 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.56 7.51 -2.39 -0.02 1.54 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.39 6.29 -2.39 -0.02 2.38 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 2.07 6.28 -2.39 -0.01 2.05 16 38 H 0.39 8.46 9.12 -74.06 -0.68 7.79 16 39 H 0.40 14.99 6.59 -92.71 -0.61 14.38 16 40 H 0.15 3.97 6.50 -2.91 -0.02 3.95 16 41 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.21 2.34 8.06 -2.91 -0.02 2.31 16 43 H 0.23 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.16 4.64 7.10 -2.91 -0.02 4.62 16 45 H 0.04 1.72 6.97 -2.38 -0.02 1.71 16 46 H 0.06 2.76 4.36 -2.39 -0.01 2.75 16 Total: -1.00 -71.72 361.89 0.86 -70.86 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.35 Total: 36.57 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.20 Total: 14.26 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -4.67 Total: -127.27 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -2.00 Total: -40.77 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.67 Total: 46.34 kcal Total: -71.72 0.86 -70.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271973639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.059 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds