Wall clock time and date at job start Wed Apr 1 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99970 * 2 1 4 4 H 1.48504 * 109.46669 * 90.00359 * 3 2 1 5 5 H 1.48493 * 109.47439 * 210.00197 * 3 2 1 6 6 H 1.48502 * 109.47123 * 330.00624 * 3 2 1 7 7 C 1.38811 * 119.99701 * 180.28142 * 2 1 3 8 8 H 1.07994 * 120.00535 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99565 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99679 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46921 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46997 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.88719 * 54.29861 * 12 11 10 14 14 C 1.55154 * 111.00255 * 178.17865 * 12 11 10 15 15 C 1.54372 * 102.91988 * 153.54496 * 14 12 11 16 16 N 1.47022 * 107.28926 * 337.86481 * 15 14 12 17 17 C 1.34778 * 125.65038 * 178.94513 * 16 15 14 18 18 O 1.21597 * 119.99958 * 174.70567 * 17 16 15 19 19 C 1.47508 * 119.99669 * 354.70558 * 17 16 15 20 20 C 1.40155 * 119.94560 * 188.06555 * 19 17 16 21 21 C 1.36208 * 120.49346 * 179.97438 * 20 19 17 22 22 C 1.40017 * 120.08188 * 359.96915 * 21 20 19 23 23 N 1.35562 * 133.26045 * 180.02562 * 22 21 20 24 24 C 1.30919 * 109.71323 * 180.02562 * 23 22 21 25 25 O 1.35202 * 125.01925 * 180.02562 * 24 23 22 26 26 N 1.36263 * 109.97117 * 359.97438 * 24 23 22 27 27 H 0.96998 * 126.39262 * 179.97438 * 26 24 23 28 28 C 1.38558 * 107.20445 * 0.02562 * 26 24 23 29 29 C 1.38215 * 133.90029 * 180.30313 * 28 26 24 30 30 C 1.47430 * 108.70353 * 358.90324 * 16 15 14 31 31 H 0.96999 * 120.00539 * 359.71977 * 1 2 3 32 32 H 0.96996 * 120.00276 * 359.97438 * 9 7 2 33 33 H 1.08992 * 109.47609 * 300.00066 * 10 9 7 34 34 H 1.09005 * 109.47250 * 60.00417 * 10 9 7 35 35 H 1.09000 * 109.46822 * 300.00112 * 11 10 9 36 36 H 1.08992 * 109.47042 * 60.00280 * 11 10 9 37 37 H 1.08993 * 110.72225 * 271.93993 * 14 12 11 38 38 H 1.09006 * 110.71946 * 35.21646 * 14 12 11 39 39 H 1.09003 * 109.90124 * 218.42423 * 15 14 12 40 40 H 1.08995 * 109.97241 * 97.34231 * 15 14 12 41 41 H 1.08002 * 119.75326 * 359.97438 * 20 19 17 42 42 H 1.08000 * 119.95789 * 180.02562 * 21 20 19 43 43 H 0.96697 * 113.99499 * 269.97703 * 25 24 23 44 44 H 1.07996 * 120.20500 * 359.91747 * 29 28 26 45 45 H 1.09002 * 110.37003 * 265.29451 * 30 16 15 46 46 H 1.09000 * 110.45664 * 143.01156 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4703 -2.1374 -0.0101 9 7 3.3796 -1.2021 -0.0064 10 6 4.1121 -2.4708 -0.0121 11 6 5.6164 -2.1913 -0.0109 12 6 6.3813 -3.5163 -0.0174 13 1 6.0609 -4.1459 -0.8475 14 6 7.9132 -3.2738 -0.0624 15 6 8.4833 -4.5430 0.6064 16 7 7.4139 -5.1180 1.4354 17 6 7.5078 -6.2458 2.1674 18 8 6.5901 -6.5780 2.8928 19 6 8.7237 -7.0771 2.0884 20 6 8.7559 -8.3309 2.7141 21 6 9.8726 -9.1079 2.6479 22 6 11.0004 -8.6579 1.9508 23 7 12.2233 -9.1941 1.7171 24 6 12.9388 -8.3658 0.9988 25 8 14.2069 -8.5915 0.5877 26 7 12.2165 -7.2431 0.7257 27 1 12.5160 -6.4770 0.2117 28 6 10.9749 -7.3999 1.3203 29 6 9.8379 -6.6167 1.3859 30 6 6.2221 -4.2560 1.3343 31 1 -0.4851 0.8400 0.0041 32 1 3.8646 -0.3621 -0.0031 33 1 3.8491 -3.0462 0.8755 34 1 3.8484 -3.0386 -0.9045 35 1 5.8796 -1.6157 -0.8983 36 1 5.8797 -1.6237 0.8816 37 1 8.2604 -3.1907 -1.0922 38 1 8.1798 -2.3844 0.5087 39 1 9.3370 -4.2813 1.2317 40 1 8.7881 -5.2604 -0.1554 41 1 7.8887 -8.6834 3.2528 42 1 9.8878 -10.0728 3.1329 43 1 14.8820 -8.2810 1.2064 44 1 9.8134 -5.6528 0.8996 45 1 6.1995 -3.5417 2.1573 46 1 5.3145 -4.8597 1.3318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272583243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:57 Heat of formation + Delta-G solvation = 42.710870 kcal Electronic energy + Delta-G solvation = -28739.412679 eV Core-core repulsion = 24631.615027 eV Total energy + Delta-G solvation = -4107.797652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73731 -40.62945 -38.70053 -37.99863 -36.64963 -35.45518 -33.96778 -33.09471 -31.38688 -30.75538 -29.86945 -29.67383 -27.39911 -25.21346 -23.79302 -23.08225 -22.96825 -22.03374 -21.25227 -20.52135 -20.16794 -19.65152 -18.20947 -17.73769 -17.57444 -17.10592 -16.48465 -16.31026 -15.66533 -15.01734 -14.97058 -14.73361 -14.56010 -14.49719 -14.15844 -13.88788 -13.74229 -13.37700 -13.11958 -12.96440 -12.73123 -12.56898 -12.38890 -12.09179 -12.01739 -11.83938 -11.48826 -11.39130 -11.28924 -10.93114 -10.78444 -10.63996 -10.52652 -10.32665 -10.13564 -10.10239 -9.58395 -9.03870 -8.88988 -8.85556 -8.65141 -7.22822 -5.75896 -3.11688 0.05291 0.93058 1.66990 1.93574 2.65114 2.70627 3.14696 3.36360 3.38855 3.44591 3.46824 3.86311 4.08548 4.19230 4.41023 4.51437 4.57778 4.59209 4.68523 4.69771 4.81665 4.86257 4.98842 5.10702 5.20811 5.30739 5.46575 5.48036 5.54551 5.62019 5.63341 5.64462 5.77511 5.82095 5.83563 5.92509 5.96453 6.08381 6.09445 6.11764 6.22873 6.27447 6.71633 6.74751 6.95162 7.15177 7.23285 7.91562 8.00812 8.43026 9.22171 9.94311 10.13847 11.42563 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.001829 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.777395 B =15303.055299 C =16163.729165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.154 3.846 11 C -0.119 4.119 12 C -0.094 4.094 13 H 0.089 0.911 14 C -0.132 4.132 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.574 3.426 18 O -0.528 6.528 19 C -0.108 4.108 20 C -0.067 4.067 21 C -0.073 4.073 22 C 0.080 3.920 23 N -0.488 5.488 24 C 0.460 3.540 25 O -0.442 6.442 26 N -0.598 5.598 27 H 0.425 0.575 28 C 0.043 3.957 29 C -0.107 4.107 30 C 0.110 3.890 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.413 0.587 44 H 0.165 0.835 45 H 0.075 0.925 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.740 -14.517 1.338 35.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.157 4.157 12 C -0.114 4.114 13 H 0.107 0.893 14 C -0.170 4.170 15 C -0.033 4.033 16 N -0.346 5.346 17 C 0.363 3.637 18 O -0.405 6.405 19 C -0.112 4.112 20 C -0.088 4.088 21 C -0.092 4.092 22 C -0.039 4.039 23 N -0.219 5.219 24 C 0.155 3.845 25 O -0.244 6.244 26 N -0.222 5.222 27 H 0.265 0.735 28 C -0.065 4.065 29 C -0.127 4.127 30 C -0.012 4.012 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.272 0.728 44 H 0.182 0.818 45 H 0.093 0.907 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 32.111 -15.959 1.577 35.893 hybrid contribution 1.052 2.582 -0.346 2.810 sum 33.163 -13.376 1.231 35.780 Atomic orbital electron populations 1.69705 1.05098 1.25795 1.57620 1.24692 0.95265 0.97235 1.02109 0.86519 0.79130 0.84957 0.77735 1.21095 1.20400 1.21749 1.19081 0.80674 0.94781 1.42898 0.89206 1.42709 1.04090 1.02257 1.91235 1.20669 0.88468 0.89368 0.98772 1.21736 0.96368 0.95140 1.02446 1.22345 0.94178 0.97647 0.97229 0.89314 1.22820 0.95892 0.96759 1.01499 1.22552 0.90855 0.95771 0.94164 1.48381 1.15241 1.24241 1.46744 1.17725 0.86790 0.79518 0.79623 1.90834 1.40073 1.70970 1.38640 1.19619 0.93495 0.96367 1.01753 1.20768 0.98319 0.92175 0.97512 1.19979 0.89723 1.00680 0.98862 1.19037 0.92936 0.91587 1.00349 1.70662 1.04352 1.28934 1.17993 1.20402 0.86851 0.83244 0.93958 1.84823 1.10183 1.81664 1.47699 1.43403 1.12593 1.18894 1.47334 0.73528 1.18483 0.87568 0.98966 1.01487 1.21589 0.89754 1.01374 0.99984 1.22460 0.88100 0.93012 0.97598 0.93074 0.80741 0.95342 0.95575 0.91305 0.91566 0.89674 0.90034 0.90652 0.90454 0.83583 0.84238 0.72845 0.81797 0.90687 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.03 27.74 -169.99 -4.72 17.32 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.42 6.51 56.52 0.37 -6.05 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.76 -17.89 5.41 -59.91 -0.32 -18.21 16 10 C 0.15 2.85 6.14 -4.04 -0.02 2.83 16 11 C -0.12 -1.57 4.84 -26.73 -0.13 -1.70 16 12 C -0.09 -0.97 3.04 -88.47 -0.27 -1.24 16 13 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.13 -0.93 6.42 -24.87 -0.16 -1.09 16 15 C 0.09 0.60 4.87 -3.04 -0.01 0.59 16 16 N -0.61 -6.53 3.33 -176.68 -0.59 -7.11 16 17 C 0.57 7.18 7.79 -12.48 -0.10 7.08 16 18 O -0.53 -8.59 16.65 5.28 0.09 -8.50 16 19 C -0.11 -1.08 5.88 -104.92 -0.62 -1.70 16 20 C -0.07 -0.64 9.51 -39.59 -0.38 -1.02 16 21 C -0.07 -0.66 10.03 -39.65 -0.40 -1.05 16 22 C 0.08 0.79 7.22 -84.61 -0.61 0.18 16 23 N -0.49 -4.91 11.29 -12.18 -0.14 -5.05 16 24 C 0.46 3.26 9.39 -88.90 -0.83 2.42 16 25 O -0.44 -1.90 13.62 -17.30 -0.24 -2.13 16 26 N -0.60 -3.25 6.27 -11.93 -0.07 -3.33 16 27 H 0.43 0.83 8.96 -40.82 -0.37 0.46 16 28 C 0.04 0.35 7.29 -83.89 -0.61 -0.26 16 29 C -0.11 -0.82 8.59 -39.11 -0.34 -1.16 16 30 C 0.11 1.30 5.69 -2.52 -0.01 1.29 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.36 8.19 5.53 -40.82 -0.23 7.97 16 33 H 0.03 0.54 7.59 -51.93 -0.39 0.15 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.86 8.04 -51.93 -0.42 0.45 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 39 H 0.08 0.38 6.81 -51.93 -0.35 0.03 16 40 H 0.08 0.42 6.64 -51.93 -0.34 0.08 16 41 H 0.15 1.36 7.64 -52.49 -0.40 0.96 16 42 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.41 -0.49 9.06 45.56 0.41 -0.08 16 44 H 0.17 0.88 2.74 -58.90 -0.16 0.72 16 45 H 0.07 0.93 7.96 -51.93 -0.41 0.51 16 46 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -38.65 375.72 -9.50 -48.15 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.20 Total: 4.00 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -4.75 Total: -1.99 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.35 Total: -62.51 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.15 Total: -10.63 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.72 Total: 17.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.65 -9.50 -48.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272583243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.860 kcal (2) G-P(sol) polarization free energy of solvation -38.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds