Wall clock time and date at job start Wed Apr 1 2020 02:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99970 * 2 1 4 4 H 1.48504 * 109.46669 * 90.00359 * 3 2 1 5 5 H 1.48493 * 109.47439 * 210.00197 * 3 2 1 6 6 H 1.48502 * 109.47123 * 330.00624 * 3 2 1 7 7 C 1.38811 * 119.99701 * 180.28142 * 2 1 3 8 8 H 1.07994 * 120.00535 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99565 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99679 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46921 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46997 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.88719 * 54.29861 * 12 11 10 14 14 C 1.55154 * 111.00255 * 178.17865 * 12 11 10 15 15 C 1.54372 * 102.91988 * 153.54496 * 14 12 11 16 16 N 1.47022 * 107.28926 * 337.86481 * 15 14 12 17 17 C 1.34778 * 125.65038 * 178.94513 * 16 15 14 18 18 O 1.21597 * 119.99958 * 174.70567 * 17 16 15 19 19 C 1.47508 * 119.99669 * 354.70558 * 17 16 15 20 20 C 1.40155 * 119.94560 * 188.06555 * 19 17 16 21 21 C 1.36208 * 120.49346 * 179.97438 * 20 19 17 22 22 C 1.40017 * 120.08188 * 359.96915 * 21 20 19 23 23 N 1.35562 * 133.26045 * 180.02562 * 22 21 20 24 24 C 1.30919 * 109.71323 * 180.02562 * 23 22 21 25 25 O 1.35202 * 125.01925 * 180.02562 * 24 23 22 26 26 N 1.36263 * 109.97117 * 359.97438 * 24 23 22 27 27 H 0.96998 * 126.39262 * 179.97438 * 26 24 23 28 28 C 1.38558 * 107.20445 * 0.02562 * 26 24 23 29 29 C 1.38215 * 133.90029 * 180.30313 * 28 26 24 30 30 C 1.47430 * 108.70353 * 358.90324 * 16 15 14 31 31 H 0.96999 * 120.00539 * 359.71977 * 1 2 3 32 32 H 0.96996 * 120.00276 * 359.97438 * 9 7 2 33 33 H 1.08992 * 109.47609 * 300.00066 * 10 9 7 34 34 H 1.09005 * 109.47250 * 60.00417 * 10 9 7 35 35 H 1.09000 * 109.46822 * 300.00112 * 11 10 9 36 36 H 1.08992 * 109.47042 * 60.00280 * 11 10 9 37 37 H 1.08993 * 110.72225 * 271.93993 * 14 12 11 38 38 H 1.09006 * 110.71946 * 35.21646 * 14 12 11 39 39 H 1.09003 * 109.90124 * 218.42423 * 15 14 12 40 40 H 1.08995 * 109.97241 * 97.34231 * 15 14 12 41 41 H 1.08002 * 119.75326 * 359.97438 * 20 19 17 42 42 H 1.08000 * 119.95789 * 180.02562 * 21 20 19 43 43 H 0.96697 * 113.99499 * 269.97703 * 25 24 23 44 44 H 1.07996 * 120.20500 * 359.91747 * 29 28 26 45 45 H 1.09002 * 110.37003 * 265.29451 * 30 16 15 46 46 H 1.09000 * 110.45664 * 143.01156 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4703 -2.1374 -0.0101 9 7 3.3796 -1.2021 -0.0064 10 6 4.1121 -2.4708 -0.0121 11 6 5.6164 -2.1913 -0.0109 12 6 6.3813 -3.5163 -0.0174 13 1 6.0609 -4.1459 -0.8475 14 6 7.9132 -3.2738 -0.0624 15 6 8.4833 -4.5430 0.6064 16 7 7.4139 -5.1180 1.4354 17 6 7.5078 -6.2458 2.1674 18 8 6.5901 -6.5780 2.8928 19 6 8.7237 -7.0771 2.0884 20 6 8.7559 -8.3309 2.7141 21 6 9.8726 -9.1079 2.6479 22 6 11.0004 -8.6579 1.9508 23 7 12.2233 -9.1941 1.7171 24 6 12.9388 -8.3658 0.9988 25 8 14.2069 -8.5915 0.5877 26 7 12.2165 -7.2431 0.7257 27 1 12.5160 -6.4770 0.2117 28 6 10.9749 -7.3999 1.3203 29 6 9.8379 -6.6167 1.3859 30 6 6.2221 -4.2560 1.3343 31 1 -0.4851 0.8400 0.0041 32 1 3.8646 -0.3621 -0.0031 33 1 3.8491 -3.0462 0.8755 34 1 3.8484 -3.0386 -0.9045 35 1 5.8796 -1.6157 -0.8983 36 1 5.8797 -1.6237 0.8816 37 1 8.2604 -3.1907 -1.0922 38 1 8.1798 -2.3844 0.5087 39 1 9.3370 -4.2813 1.2317 40 1 8.7881 -5.2604 -0.1554 41 1 7.8887 -8.6834 3.2528 42 1 9.8878 -10.0728 3.1329 43 1 14.8820 -8.2810 1.2064 44 1 9.8134 -5.6528 0.8996 45 1 6.1995 -3.5417 2.1573 46 1 5.3145 -4.8597 1.3318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272583243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:56 Heat of formation + Delta-G solvation = 10.094690 kcal Electronic energy + Delta-G solvation = -28740.827022 eV Core-core repulsion = 24631.615027 eV Total energy + Delta-G solvation = -4109.211995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.31009 -41.44548 -39.30469 -38.77931 -37.28695 -37.03717 -34.86572 -34.26498 -33.09539 -31.43738 -30.96045 -30.31899 -28.59179 -26.23163 -25.02345 -23.88606 -23.74007 -22.93869 -22.48139 -21.36939 -21.02235 -20.10678 -19.62972 -18.87957 -18.29117 -17.82337 -17.33672 -16.94208 -16.58940 -16.46661 -15.90453 -15.79868 -15.61289 -15.21503 -15.11144 -15.00716 -14.79236 -14.53542 -14.22903 -14.06272 -13.74084 -13.62069 -13.18892 -13.06176 -12.99418 -12.86884 -12.66954 -12.53022 -12.32947 -12.03798 -11.93674 -11.84985 -11.73584 -11.53236 -11.45105 -11.22432 -10.95723 -10.92155 -9.82706 -9.52994 -9.30345 -9.29796 -8.02907 -5.37416 -0.58040 0.26700 1.15843 1.37906 1.38682 1.43724 1.51105 1.83003 1.92481 2.49433 2.66099 2.76101 3.27627 3.28716 3.36708 3.55569 3.63405 3.76135 3.93830 4.02371 4.06102 4.10689 4.20018 4.23100 4.36334 4.43062 4.46731 4.51095 4.57715 4.72991 4.82428 4.87570 4.92591 4.96344 5.00818 5.11942 5.16368 5.20692 5.25934 5.33556 5.39033 5.48003 5.60735 5.75204 5.89147 6.21021 6.40938 6.58823 6.66083 7.01656 7.08304 7.83872 8.04721 9.18816 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.001829 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.777395 B =15303.055299 C =16163.729165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.244 1.244 6 H -0.296 1.296 7 C -0.242 4.242 8 H 0.049 0.951 9 N -0.759 5.759 10 C 0.148 3.852 11 C -0.104 4.104 12 C -0.087 4.087 13 H 0.089 0.911 14 C -0.119 4.119 15 C 0.079 3.921 16 N -0.611 5.611 17 C 0.568 3.432 18 O -0.583 6.583 19 C -0.128 4.128 20 C -0.074 4.074 21 C -0.080 4.080 22 C 0.063 3.937 23 N -0.531 5.531 24 C 0.475 3.525 25 O -0.442 6.442 26 N -0.577 5.577 27 H 0.444 0.556 28 C 0.041 3.959 29 C -0.083 4.083 30 C 0.106 3.894 31 H 0.258 0.742 32 H 0.368 0.632 33 H 0.015 0.985 34 H 0.020 0.980 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.148 0.852 43 H 0.437 0.563 44 H 0.194 0.806 45 H 0.067 0.933 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.742 -12.664 -0.287 39.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.261 4.261 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.168 1.168 6 H -0.222 1.222 7 C -0.373 4.373 8 H 0.067 0.933 9 N -0.405 5.405 10 C 0.022 3.978 11 C -0.142 4.142 12 C -0.107 4.107 13 H 0.107 0.893 14 C -0.156 4.156 15 C -0.041 4.041 16 N -0.343 5.343 17 C 0.360 3.640 18 O -0.465 6.465 19 C -0.133 4.133 20 C -0.096 4.096 21 C -0.100 4.100 22 C -0.056 4.056 23 N -0.264 5.264 24 C 0.170 3.830 25 O -0.248 6.248 26 N -0.203 5.203 27 H 0.288 0.712 28 C -0.068 4.068 29 C -0.103 4.103 30 C -0.017 4.017 31 H 0.067 0.933 32 H 0.202 0.798 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.154 0.846 42 H 0.165 0.835 43 H 0.301 0.699 44 H 0.210 0.790 45 H 0.086 0.914 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 37.232 -14.087 -0.086 39.808 hybrid contribution -0.438 1.858 0.139 1.914 sum 36.793 -12.229 0.053 38.772 Atomic orbital electron populations 1.69913 1.07386 1.26840 1.59512 1.25653 0.96265 1.01782 1.02351 0.85283 0.78813 0.78728 0.78186 1.20381 1.16763 1.22230 1.19054 0.83075 0.93374 1.41767 0.93283 1.42700 1.02354 1.04422 1.91003 1.20881 0.92038 0.87203 0.97715 1.21600 0.92146 0.96964 1.03481 1.22226 0.96872 0.95755 0.95856 0.89285 1.22830 0.92238 0.97071 1.03477 1.22927 0.90401 0.96165 0.94649 1.48442 1.15854 1.23490 1.46469 1.18146 0.86937 0.79905 0.79050 1.90795 1.42092 1.72407 1.41178 1.19450 0.93530 0.96415 1.03891 1.20732 0.98346 0.92603 0.97874 1.20032 0.89605 1.01053 0.99263 1.19278 0.93074 0.92642 1.00645 1.70621 1.04908 1.30637 1.20196 1.20451 0.87507 0.82851 0.92147 1.84799 1.09583 1.81854 1.48531 1.43259 1.11294 1.19098 1.46689 0.71205 1.18466 0.88435 0.98328 1.01609 1.21723 0.88379 1.01902 0.98258 1.22373 0.87813 0.92794 0.98672 0.93306 0.79797 0.96696 0.96163 0.89731 0.90889 0.86838 0.88946 0.87829 0.88217 0.84566 0.83469 0.69869 0.78992 0.91444 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.37 13.97 21.65 0.30 -64.07 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 3 Si 0.96 45.06 27.74 68.60 1.90 46.96 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.24 -9.92 6.51 99.48 0.65 -9.27 16 6 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 9 N -0.76 -35.38 5.41 -343.45 -1.86 -37.24 16 10 C 0.15 5.44 6.14 86.38 0.53 5.97 16 11 C -0.10 -2.48 4.84 30.60 0.15 -2.33 16 12 C -0.09 -1.59 3.04 -9.40 -0.03 -1.62 16 13 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 14 C -0.12 -1.08 6.42 31.80 0.20 -0.87 16 15 C 0.08 0.73 4.87 86.75 0.42 1.16 16 16 N -0.61 -12.29 3.33 -831.15 -2.76 -15.05 16 17 C 0.57 14.48 7.79 86.69 0.68 15.16 16 18 O -0.58 -20.41 16.65 -4.02 -0.07 -20.48 16 19 C -0.13 -2.52 5.88 -20.06 -0.12 -2.64 16 20 C -0.07 -1.50 9.51 22.26 0.21 -1.28 16 21 C -0.08 -1.47 10.03 22.23 0.22 -1.24 16 22 C 0.06 1.18 7.22 39.61 0.29 1.47 16 23 N -0.53 -9.92 11.29 -306.24 -3.46 -13.38 16 24 C 0.48 5.39 9.39 179.75 1.69 7.08 16 25 O -0.44 -2.35 13.62 -84.82 -1.16 -3.50 16 26 N -0.58 -4.15 6.27 -302.68 -1.90 -6.04 16 27 H 0.44 -0.38 8.96 -92.71 -0.83 -1.21 16 28 C 0.04 0.55 7.29 38.68 0.28 0.83 16 29 C -0.08 -1.04 8.59 22.58 0.19 -0.85 16 30 C 0.11 2.51 5.69 86.85 0.49 3.00 16 31 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 32 H 0.37 15.83 5.53 -92.71 -0.51 15.32 16 33 H 0.01 0.59 7.59 -2.39 -0.02 0.57 16 34 H 0.02 0.77 8.14 -2.38 -0.02 0.76 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 37 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 0.72 8.04 -2.38 -0.02 0.70 16 39 H 0.10 0.47 6.81 -2.39 -0.02 0.45 16 40 H 0.10 0.56 6.64 -2.39 -0.02 0.54 16 41 H 0.14 2.89 7.64 -2.91 -0.02 2.86 16 42 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.44 -2.59 9.06 -74.06 -0.67 -3.26 16 44 H 0.19 1.14 2.74 -8.94 -0.02 1.11 16 45 H 0.07 1.68 7.96 -2.39 -0.02 1.66 16 46 H 0.05 1.60 8.05 -2.39 -0.02 1.58 16 Total: -1.00 -89.71 375.72 -3.46 -93.17 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -1.02 Total: 12.79 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 6.56 Total: 6.85 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -9.67 Total: -135.78 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -1.22 Total: -23.98 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -89.71 -3.46 -93.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272583243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.260 kcal (2) G-P(sol) polarization free energy of solvation -89.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds