Wall clock time and date at job start Wed Apr 1 2020 02:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34641 * 117.00083 * 2 1 4 4 O 1.21505 * 119.99947 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.47131 * 125.61423 * 0.02562 * 5 3 2 7 7 C 1.54575 * 107.32619 * 180.91125 * 6 5 3 8 8 C 1.53782 * 102.79180 * 20.95883 * 7 6 5 9 9 C 1.47686 * 125.60696 * 179.97438 * 5 3 2 10 10 C 1.49845 * 112.04663 * 205.11922 * 8 7 6 11 11 C 1.37711 * 133.81419 * 57.87678 * 10 8 7 12 12 C 1.38342 * 120.08006 * 179.97438 * 11 10 8 13 13 C 1.38295 * 119.85407 * 0.02769 * 12 11 10 14 14 C 1.37937 * 120.30459 * 0.02856 * 13 12 11 15 15 C 1.39264 * 120.24339 * 359.94327 * 14 13 12 16 16 N 1.39712 * 130.79765 * 180.02562 * 15 14 13 17 17 C 1.46497 * 123.93773 * 359.97438 * 16 15 14 18 18 C 1.52999 * 109.46992 * 90.02683 * 17 16 15 19 19 C 1.50702 * 109.47522 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 C 1.34851 * 112.12200 * 180.26590 * 16 15 14 28 28 O 1.21293 * 126.76077 * 179.72240 * 27 16 15 29 29 H 1.08997 * 109.46910 * 299.99795 * 1 2 3 30 30 H 1.09001 * 109.47192 * 60.00216 * 1 2 3 31 31 H 1.09001 * 109.46885 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.87652 * 300.34821 * 6 5 3 33 33 H 1.09008 * 109.87222 * 61.34329 * 6 5 3 34 34 H 1.08996 * 110.74888 * 262.63114 * 7 6 5 35 35 H 1.09003 * 110.74018 * 139.28201 * 7 6 5 36 36 H 1.09003 * 110.38936 * 38.53996 * 9 5 3 37 37 H 1.08998 * 110.39352 * 276.15764 * 9 5 3 38 38 H 1.07999 * 119.95803 * 359.97438 * 11 10 8 39 39 H 1.07999 * 120.07117 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.85124 * 180.02562 * 13 12 11 41 41 H 1.08002 * 119.87435 * 179.97438 * 14 13 12 42 42 H 1.08995 * 109.47421 * 330.02927 * 17 16 15 43 43 H 1.09001 * 109.47150 * 210.02537 * 17 16 15 44 44 H 1.09000 * 109.47527 * 59.99822 * 18 17 16 45 45 H 1.09001 * 109.47054 * 299.99913 * 18 17 16 46 46 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.3272 0.1204 0.0006 7 6 5.7674 0.6814 0.0247 8 6 5.5694 2.1044 0.5732 9 6 4.2050 2.5141 0.0000 10 6 6.6656 3.0307 0.1426 11 6 7.1515 3.4282 -1.0831 12 6 8.2043 4.3229 -1.1547 13 6 8.7682 4.8168 0.0074 14 6 8.2862 4.4211 1.2378 15 6 7.2263 3.5214 1.3196 16 7 6.5728 2.9792 2.4290 17 6 6.9216 3.2915 3.8171 18 6 6.1088 4.4992 4.2878 19 6 6.4680 4.8210 5.7156 20 1 7.2023 4.2234 6.2354 21 6 5.8586 5.8774 6.3585 22 7 6.1681 6.1548 7.6063 23 14 4.5880 6.9105 5.4597 24 1 5.2636 8.0446 4.7796 25 1 3.8922 6.0719 4.4508 26 1 3.5982 7.4361 6.4340 27 6 5.5875 2.1300 2.0731 28 8 4.8581 1.5109 2.8187 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.1535 -0.4926 0.8849 33 1 4.1747 -0.4757 -0.8992 34 1 6.1876 0.7100 -0.9806 35 1 6.3990 0.0948 0.6919 36 1 3.7362 3.2651 0.6360 37 1 4.3178 2.8925 -1.0159 38 1 6.7101 3.0410 -1.9896 39 1 8.5850 4.6348 -2.1160 40 1 9.5898 5.5155 -0.0485 41 1 8.7320 4.8109 2.1409 42 1 7.9850 3.5218 3.8816 43 1 6.6967 2.4331 4.4502 44 1 5.0454 4.2690 4.2234 45 1 6.3337 5.3576 3.6548 46 1 5.7364 6.8956 8.0599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274319079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:25 Heat of formation + Delta-G solvation = -61.038023 kcal Electronic energy + Delta-G solvation = -30847.275341 eV Core-core repulsion = 26702.686049 eV Total energy + Delta-G solvation = -4144.589292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12883 -40.41108 -38.50015 -37.91812 -36.24772 -35.87970 -33.96054 -32.77971 -30.98084 -30.56668 -29.37652 -28.78813 -27.67453 -26.05706 -24.28789 -22.99884 -22.43267 -21.57983 -20.85853 -20.61937 -19.56499 -18.37034 -17.41189 -17.23547 -16.91399 -16.68523 -16.15009 -15.98212 -15.51090 -15.02669 -14.62834 -14.40282 -14.26612 -14.14621 -13.89099 -13.70047 -13.36680 -13.33791 -13.09881 -13.00721 -12.81258 -12.70264 -12.33157 -12.14414 -12.01339 -11.84734 -11.73158 -11.63894 -11.09775 -10.98990 -10.89449 -10.86571 -10.68055 -10.22681 -10.01663 -9.82366 -9.68129 -9.34706 -8.99101 -8.92248 -8.61922 -7.77779 -6.13060 -4.13375 1.08278 1.27154 1.92124 2.51988 2.72988 2.95914 3.27073 3.35779 3.42272 3.72460 3.77236 3.93861 4.04571 4.39576 4.41142 4.42460 4.65817 4.88686 4.90855 4.94676 4.99025 5.06865 5.20634 5.23044 5.29078 5.32578 5.39051 5.40421 5.42990 5.55601 5.57379 5.70155 5.72216 5.79844 5.88178 6.05252 6.09864 6.14375 6.28324 6.38049 6.44043 6.62408 6.77391 7.03997 7.13607 7.24980 7.36532 7.63549 8.07613 8.14077 8.39064 8.88274 9.48436 10.99598 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008738 B = 0.004239 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.629185 B = 6602.986277 C = 8625.369200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.668 3.332 4 O -0.569 6.569 5 N -0.599 5.599 6 C 0.107 3.893 7 C -0.099 4.099 8 C -0.070 4.070 9 C 0.160 3.840 10 C -0.143 4.143 11 C -0.059 4.059 12 C -0.151 4.151 13 C -0.077 4.077 14 C -0.137 4.137 15 C 0.168 3.832 16 N -0.548 5.548 17 C 0.120 3.880 18 C -0.023 4.023 19 C -0.524 4.524 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.897 5.897 23 Si 0.876 3.124 24 H -0.275 1.275 25 H -0.266 1.266 26 H -0.285 1.285 27 C 0.537 3.463 28 O -0.480 6.480 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.021 0.979 45 H 0.016 0.984 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 -11.311 -23.139 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.282 6.282 3 C 0.423 3.577 4 O -0.458 6.458 5 N -0.339 5.339 6 C -0.015 4.015 7 C -0.137 4.137 8 C -0.074 4.074 9 C 0.038 3.962 10 C -0.146 4.146 11 C -0.078 4.078 12 C -0.171 4.171 13 C -0.096 4.096 14 C -0.158 4.158 15 C 0.070 3.930 16 N -0.268 5.268 17 C 0.000 4.000 18 C -0.062 4.062 19 C -0.562 4.562 20 H 0.094 0.906 21 C -0.128 4.128 22 N -0.536 5.536 23 Si 0.703 3.297 24 H -0.201 1.201 25 H -0.191 1.191 26 H -0.211 1.211 27 C 0.324 3.676 28 O -0.352 6.352 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.029 -11.312 -22.363 25.061 hybrid contribution -0.770 0.825 -0.060 1.130 sum -0.800 -10.487 -22.422 24.767 Atomic orbital electron populations 1.23199 0.74410 1.03390 1.02800 1.86237 1.24075 1.30798 1.87074 1.17423 0.81677 0.82253 0.76341 1.91018 1.63716 1.35031 1.56030 1.46956 1.01847 1.08900 1.76247 1.22141 0.87905 0.88534 1.02948 1.22400 0.96407 0.92131 1.02723 1.20306 0.95100 0.97275 0.94729 1.21772 0.86559 0.86029 1.01816 1.19204 0.99435 1.02458 0.93532 1.20113 0.95851 0.96598 0.95193 1.20946 0.97977 0.99661 0.98481 1.20915 0.98965 0.98316 0.91407 1.20517 0.97027 0.99026 0.99261 1.18423 0.93712 0.94574 0.86242 1.46475 1.31890 1.41078 1.07398 1.21942 1.00565 1.00840 0.76637 1.19895 0.96041 0.92603 0.97622 1.20869 1.25124 1.15135 0.95117 0.90644 1.24929 0.96265 0.96954 0.94673 1.69892 1.43046 1.29772 1.10841 0.86830 0.82008 0.80840 0.80030 1.20066 1.19065 1.21070 1.19814 0.79681 0.78811 0.89313 1.90785 1.41129 1.44130 1.59183 0.91734 0.91924 0.87965 0.90235 0.90458 0.88672 0.88999 0.89347 0.89263 0.85733 0.85535 0.85271 0.84995 0.90082 0.89635 0.96068 0.96545 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -4.76 10.17 -40.33 -0.41 -5.17 16 3 C 0.67 10.32 8.62 54.05 0.47 10.79 16 4 O -0.57 -10.49 16.41 -19.28 -0.32 -10.80 16 5 N -0.60 -8.17 3.34 -176.69 -0.59 -8.76 16 6 C 0.11 1.12 6.76 -2.87 -0.02 1.10 16 7 C -0.10 -0.94 5.96 -25.50 -0.15 -1.09 16 8 C -0.07 -0.90 0.78 -156.86 -0.12 -1.03 16 9 C 0.16 2.14 5.91 -3.11 -0.02 2.12 16 10 C -0.14 -1.73 5.10 -104.83 -0.53 -2.26 16 11 C -0.06 -0.55 9.98 -39.74 -0.40 -0.95 16 12 C -0.15 -1.34 10.06 -39.52 -0.40 -1.73 16 13 C -0.08 -0.78 10.02 -39.67 -0.40 -1.18 16 14 C -0.14 -1.78 9.73 -39.31 -0.38 -2.17 16 15 C 0.17 2.46 6.71 -83.49 -0.56 1.90 16 16 N -0.55 -9.59 2.75 -113.53 -0.31 -9.91 16 17 C 0.12 2.38 5.70 -4.04 -0.02 2.36 16 18 C -0.02 -0.57 4.36 -27.88 -0.12 -0.69 16 19 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 20 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 21 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 22 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 23 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 26 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 27 C 0.54 9.40 6.82 -11.28 -0.08 9.32 16 28 O -0.48 -9.96 17.61 5.55 0.10 -9.87 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.09 0.64 8.04 -51.93 -0.42 0.23 16 35 H 0.09 0.86 7.99 -51.93 -0.42 0.45 16 36 H 0.09 1.44 7.95 -51.93 -0.41 1.03 16 37 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.74 7.70 -52.49 -0.40 1.34 16 42 H 0.08 1.47 7.62 -51.93 -0.40 1.07 16 43 H 0.09 1.77 7.97 -51.93 -0.41 1.36 16 44 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 45 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -36.16 385.89 -8.32 -44.48 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.61 Total: -1.69 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.10 Total: 5.03 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.13 Total: -45.45 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.63 Total: -25.84 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.16 -8.32 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274319079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.560 kcal (2) G-P(sol) polarization free energy of solvation -36.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds