Wall clock time and date at job start Wed Apr 1 2020 02:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34641 * 117.00083 * 2 1 4 4 O 1.21505 * 119.99947 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.47131 * 125.61423 * 0.02562 * 5 3 2 7 7 C 1.54575 * 107.32619 * 180.91125 * 6 5 3 8 8 C 1.53782 * 102.79180 * 20.95883 * 7 6 5 9 9 C 1.47686 * 125.60696 * 179.97438 * 5 3 2 10 10 C 1.49845 * 112.04663 * 205.11922 * 8 7 6 11 11 C 1.37711 * 133.81419 * 57.87678 * 10 8 7 12 12 C 1.38342 * 120.08006 * 179.97438 * 11 10 8 13 13 C 1.38295 * 119.85407 * 0.02769 * 12 11 10 14 14 C 1.37937 * 120.30459 * 0.02856 * 13 12 11 15 15 C 1.39264 * 120.24339 * 359.94327 * 14 13 12 16 16 N 1.39712 * 130.79765 * 180.02562 * 15 14 13 17 17 C 1.46497 * 123.93773 * 359.97438 * 16 15 14 18 18 C 1.52999 * 109.46992 * 90.02683 * 17 16 15 19 19 C 1.50702 * 109.47522 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 C 1.34851 * 112.12200 * 180.26590 * 16 15 14 28 28 O 1.21293 * 126.76077 * 179.72240 * 27 16 15 29 29 H 1.08997 * 109.46910 * 299.99795 * 1 2 3 30 30 H 1.09001 * 109.47192 * 60.00216 * 1 2 3 31 31 H 1.09001 * 109.46885 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.87652 * 300.34821 * 6 5 3 33 33 H 1.09008 * 109.87222 * 61.34329 * 6 5 3 34 34 H 1.08996 * 110.74888 * 262.63114 * 7 6 5 35 35 H 1.09003 * 110.74018 * 139.28201 * 7 6 5 36 36 H 1.09003 * 110.38936 * 38.53996 * 9 5 3 37 37 H 1.08998 * 110.39352 * 276.15764 * 9 5 3 38 38 H 1.07999 * 119.95803 * 359.97438 * 11 10 8 39 39 H 1.07999 * 120.07117 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.85124 * 180.02562 * 13 12 11 41 41 H 1.08002 * 119.87435 * 179.97438 * 14 13 12 42 42 H 1.08995 * 109.47421 * 330.02927 * 17 16 15 43 43 H 1.09001 * 109.47150 * 210.02537 * 17 16 15 44 44 H 1.09000 * 109.47527 * 59.99822 * 18 17 16 45 45 H 1.09001 * 109.47054 * 299.99913 * 18 17 16 46 46 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.3272 0.1204 0.0006 7 6 5.7674 0.6814 0.0247 8 6 5.5694 2.1044 0.5732 9 6 4.2050 2.5141 0.0000 10 6 6.6656 3.0307 0.1426 11 6 7.1515 3.4282 -1.0831 12 6 8.2043 4.3229 -1.1547 13 6 8.7682 4.8168 0.0074 14 6 8.2862 4.4211 1.2378 15 6 7.2263 3.5214 1.3196 16 7 6.5728 2.9792 2.4290 17 6 6.9216 3.2915 3.8171 18 6 6.1088 4.4992 4.2878 19 6 6.4680 4.8210 5.7156 20 1 7.2023 4.2234 6.2354 21 6 5.8586 5.8774 6.3585 22 7 6.1681 6.1548 7.6063 23 14 4.5880 6.9105 5.4597 24 1 5.2636 8.0446 4.7796 25 1 3.8922 6.0719 4.4508 26 1 3.5982 7.4361 6.4340 27 6 5.5875 2.1300 2.0731 28 8 4.8581 1.5109 2.8187 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.1535 -0.4926 0.8849 33 1 4.1747 -0.4757 -0.8992 34 1 6.1876 0.7100 -0.9806 35 1 6.3990 0.0948 0.6919 36 1 3.7362 3.2651 0.6360 37 1 4.3178 2.8925 -1.0159 38 1 6.7101 3.0410 -1.9896 39 1 8.5850 4.6348 -2.1160 40 1 9.5898 5.5155 -0.0485 41 1 8.7320 4.8109 2.1409 42 1 7.9850 3.5218 3.8816 43 1 6.6967 2.4331 4.4502 44 1 5.0454 4.2690 4.2234 45 1 6.3337 5.3576 3.6548 46 1 5.7364 6.8956 8.0599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274319079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:24 Heat of formation + Delta-G solvation = -84.913117 kcal Electronic energy + Delta-G solvation = -30848.310643 eV Core-core repulsion = 26702.686049 eV Total energy + Delta-G solvation = -4145.624594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.22457 -41.49886 -39.53359 -39.03808 -37.39330 -37.16012 -35.62236 -34.38139 -32.61279 -31.42428 -30.49179 -29.79789 -28.56001 -27.62258 -25.51308 -24.09563 -23.54703 -22.82880 -22.11621 -21.81894 -20.70734 -19.40057 -19.22624 -18.43387 -17.99959 -17.80917 -17.55387 -17.00883 -16.88920 -16.31209 -15.90293 -15.59645 -15.40538 -15.28663 -15.08118 -14.93071 -14.62232 -14.52191 -14.32434 -14.24868 -14.10443 -13.82555 -13.76586 -13.20300 -13.05684 -13.00294 -12.90232 -12.67757 -12.61487 -12.45075 -12.13840 -11.98890 -11.88648 -11.87165 -11.74002 -11.64046 -11.22815 -10.98807 -10.89505 -9.97840 -9.78304 -8.88909 -8.42648 -6.47639 0.14790 0.42788 0.93921 1.21173 1.25671 1.32337 1.36451 1.58526 1.70771 2.22679 2.80366 2.88402 2.91618 2.92568 3.06615 3.43966 3.51993 3.77543 3.97120 4.04717 4.13425 4.19363 4.27432 4.30006 4.30526 4.33535 4.40100 4.45136 4.56927 4.59316 4.61816 4.65390 4.70418 4.77741 4.91585 4.95155 5.01064 5.09498 5.10464 5.13714 5.18687 5.43687 5.51256 5.63473 5.67656 5.86268 6.09539 6.17998 6.19572 6.57370 6.75650 7.03204 7.17591 8.73319 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008738 B = 0.004239 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.629185 B = 6602.986277 C = 8625.369200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.368 6.368 3 C 0.660 3.340 4 O -0.610 6.610 5 N -0.600 5.600 6 C 0.104 3.896 7 C -0.087 4.087 8 C -0.059 4.059 9 C 0.159 3.841 10 C -0.135 4.135 11 C -0.049 4.049 12 C -0.132 4.132 13 C -0.077 4.077 14 C -0.153 4.153 15 C 0.121 3.879 16 N -0.556 5.556 17 C 0.132 3.868 18 C -0.011 4.011 19 C -0.533 4.533 20 H 0.047 0.953 21 C 0.021 3.979 22 N -0.937 5.937 23 Si 0.938 3.062 24 H -0.253 1.253 25 H -0.273 1.273 26 H -0.277 1.277 27 C 0.520 3.480 28 O -0.533 6.533 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.127 0.873 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.066 0.934 44 H -0.005 1.005 45 H 0.023 0.977 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -11.358 -28.267 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.281 6.281 3 C 0.415 3.585 4 O -0.502 6.502 5 N -0.341 5.341 6 C -0.017 4.017 7 C -0.125 4.125 8 C -0.063 4.063 9 C 0.038 3.962 10 C -0.138 4.138 11 C -0.067 4.067 12 C -0.150 4.150 13 C -0.096 4.096 14 C -0.174 4.174 15 C 0.026 3.974 16 N -0.277 5.277 17 C 0.011 3.989 18 C -0.049 4.049 19 C -0.571 4.571 20 H 0.065 0.935 21 C -0.178 4.178 22 N -0.577 5.577 23 Si 0.762 3.238 24 H -0.178 1.178 25 H -0.198 1.198 26 H -0.202 1.202 27 C 0.309 3.691 28 O -0.409 6.409 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.158 0.842 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.144 0.856 38 H 0.184 0.816 39 H 0.185 0.815 40 H 0.172 0.828 41 H 0.135 0.865 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.013 0.987 45 H 0.041 0.959 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.983 -11.364 -27.537 29.806 hybrid contribution -0.979 0.826 1.531 1.997 sum 0.004 -10.538 -26.005 28.059 Atomic orbital electron populations 1.23530 0.72691 1.05819 1.02431 1.86250 1.25779 1.29387 1.86660 1.17711 0.82262 0.82406 0.76107 1.90977 1.64794 1.36420 1.58023 1.47126 1.01689 1.10038 1.75224 1.22359 0.87810 0.87693 1.03828 1.22539 0.95867 0.89265 1.04802 1.20176 0.95322 0.99973 0.90876 1.21860 0.86213 0.85326 1.02816 1.19298 0.98663 1.02022 0.93794 1.20594 0.95321 0.95684 0.95125 1.21470 0.96451 0.97592 0.99494 1.21271 0.99365 0.98294 0.90630 1.20656 0.97122 0.99319 1.00330 1.18748 0.95645 0.97012 0.85949 1.46399 1.32670 1.41657 1.06941 1.21467 1.00489 0.98161 0.78762 1.19688 0.94979 0.94671 0.95552 1.21160 1.24319 1.14620 0.96991 0.93458 1.25756 0.98281 0.98329 0.95419 1.70007 1.44551 1.30799 1.12354 0.85850 0.79585 0.79539 0.78834 1.17753 1.19832 1.20218 1.20735 0.78751 0.77951 0.91634 1.90735 1.42935 1.46234 1.60986 0.93113 0.91363 0.84086 0.92157 0.86826 0.84170 0.89084 0.93438 0.85560 0.81564 0.81536 0.82813 0.86536 0.88652 0.91559 0.98669 0.95858 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 10.56 113.37 1.20 2.09 16 2 O -0.37 -9.29 10.17 -55.50 -0.56 -9.85 16 3 C 0.66 20.44 8.62 129.79 1.12 21.56 16 4 O -0.61 -23.07 16.41 19.83 0.33 -22.74 16 5 N -0.60 -15.88 3.34 -943.34 -3.15 -19.03 16 6 C 0.10 1.97 6.76 86.80 0.59 2.56 16 7 C -0.09 -1.39 5.96 31.39 0.19 -1.20 16 8 C -0.06 -1.46 0.78 -53.70 -0.04 -1.50 16 9 C 0.16 4.10 5.91 86.34 0.51 4.61 16 10 C -0.13 -2.87 5.10 -20.00 -0.10 -2.97 16 11 C -0.05 -0.63 9.98 22.17 0.22 -0.41 16 12 C -0.13 -1.53 10.06 22.31 0.22 -1.30 16 13 C -0.08 -1.26 10.02 22.21 0.22 -1.04 16 14 C -0.15 -3.80 9.73 22.45 0.22 -3.58 16 15 C 0.12 3.47 6.71 38.39 0.26 3.73 16 16 N -0.56 -20.28 2.75 -631.43 -1.74 -22.02 16 17 C 0.13 5.63 5.70 86.38 0.49 6.13 16 18 C -0.01 -0.54 4.36 29.85 0.13 -0.41 16 19 C -0.53 -31.64 9.66 25.60 0.25 -31.39 16 20 H 0.05 3.00 7.99 -2.91 -0.02 2.97 16 21 C 0.02 1.26 5.47 84.65 0.46 1.72 16 22 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 23 Si 0.94 47.13 27.47 68.60 1.88 49.01 16 24 H -0.25 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -13.97 6.54 99.48 0.65 -13.32 16 26 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 27 C 0.52 19.01 6.82 87.43 0.60 19.60 16 28 O -0.53 -23.79 17.61 -3.07 -0.05 -23.85 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.14 1.03 8.04 -2.39 -0.02 1.01 16 35 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 36 H 0.05 1.61 7.95 -2.39 -0.02 1.59 16 37 H 0.13 2.28 8.03 -2.39 -0.02 2.26 16 38 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.12 3.13 7.70 -2.91 -0.02 3.11 16 42 H 0.10 3.68 7.62 -2.39 -0.02 3.67 16 43 H 0.07 3.01 7.97 -2.39 -0.02 2.99 16 44 H -0.01 -0.28 7.20 -2.39 -0.02 -0.30 16 45 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 46 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -86.45 385.89 4.47 -81.99 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.93 Total: 7.37 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 6.53 Total: 18.18 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.59 Total: -100.11 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -0.29 Total: -56.44 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.88 Total: 49.01 kcal Total: -86.45 4.47 -81.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274319079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.925 kcal (2) G-P(sol) polarization free energy of solvation -86.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds