Wall clock time and date at job start Wed Apr 1 2020 02:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34638 * 116.99876 * 2 1 4 4 O 1.21511 * 120.00098 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99595 * 179.97438 * 3 2 1 6 6 C 1.47129 * 125.61553 * 359.97145 * 5 3 2 7 7 C 1.54555 * 107.32664 * 179.10617 * 6 5 3 8 8 C 1.53799 * 102.79584 * 339.04490 * 7 6 5 9 9 C 1.47701 * 125.60727 * 180.02562 * 5 3 2 10 10 C 1.49844 * 112.01175 * 154.90372 * 8 7 6 11 11 C 1.37709 * 133.81272 * 301.81668 * 10 8 7 12 12 C 1.38353 * 120.07933 * 179.23988 * 11 10 8 13 13 C 1.38305 * 119.84322 * 0.61311 * 12 11 10 14 14 C 1.37924 * 120.31283 * 359.69370 * 13 12 11 15 15 C 1.39266 * 120.24259 * 359.94133 * 14 13 12 16 16 N 1.39715 * 130.80036 * 179.97438 * 15 14 13 17 17 C 1.46499 * 123.93566 * 359.97438 * 16 15 14 18 18 C 1.53004 * 109.47198 * 269.70604 * 17 16 15 19 19 C 1.50701 * 109.47211 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27574 * 19 18 17 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.34844 * 112.12973 * 179.72712 * 16 15 14 28 28 O 1.21279 * 126.77108 * 180.20296 * 27 16 15 29 29 H 1.09002 * 109.46518 * 60.00639 * 1 2 3 30 30 H 1.08995 * 109.47125 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47226 * 300.00503 * 1 2 3 32 32 H 1.09003 * 109.87459 * 59.66407 * 6 5 3 33 33 H 1.09009 * 109.86723 * 298.54248 * 6 5 3 34 34 H 1.08999 * 110.74913 * 220.71817 * 7 6 5 35 35 H 1.09001 * 110.75047 * 97.37424 * 7 6 5 36 36 H 1.09008 * 110.38393 * 83.82921 * 9 5 3 37 37 H 1.09002 * 110.38902 * 321.45487 * 9 5 3 38 38 H 1.08003 * 119.95759 * 359.91905 * 11 10 8 39 39 H 1.07992 * 120.07622 * 180.21188 * 12 11 10 40 40 H 1.08001 * 119.84094 * 179.66887 * 13 12 11 41 41 H 1.08000 * 119.87838 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47602 * 149.70154 * 17 16 15 43 43 H 1.09007 * 109.47337 * 29.69869 * 17 16 15 44 44 H 1.09000 * 109.47211 * 59.99311 * 18 17 16 45 45 H 1.09007 * 109.46376 * 299.99853 * 18 17 16 46 46 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.3273 0.1205 0.0017 7 6 5.7673 0.6814 -0.0211 8 6 5.5699 2.1045 -0.5701 9 6 4.2052 2.5143 0.0011 10 6 6.6664 3.0301 -0.1385 11 6 7.1481 3.4312 1.0876 12 6 8.2132 4.3112 1.1601 13 6 8.7848 4.7971 -0.0018 14 6 8.3022 4.4035 -1.2324 15 6 7.2354 3.5122 -1.3151 16 7 6.5797 2.9735 -2.4251 17 6 6.9331 3.2819 -3.8129 18 6 6.1250 4.4910 -4.2884 19 6 6.4881 4.8078 -5.7163 20 1 7.2222 4.2071 -6.2328 21 6 5.8878 5.8683 -6.3612 22 7 6.2086 6.1482 -7.6056 23 14 4.6185 6.9075 -5.4676 24 1 5.2977 8.0335 -4.7776 25 1 3.6404 7.4451 -6.4472 26 1 3.9085 6.0702 -4.4676 27 6 5.5871 2.1327 -2.0701 28 8 4.8536 1.5193 -2.8161 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.1544 -0.4928 -0.8827 33 1 4.1754 -0.4741 0.9027 34 1 6.3998 0.0948 -0.6874 35 1 6.1865 0.7102 0.9847 36 1 4.3169 2.8931 1.0172 37 1 3.7369 3.2650 -0.6355 38 1 6.7010 3.0497 1.9938 39 1 8.5931 4.6231 2.1217 40 1 9.6128 5.4882 0.0549 41 1 8.7536 4.7877 -2.1352 42 1 6.7076 2.4229 -4.4448 43 1 7.9974 3.5092 -3.8750 44 1 6.3505 5.3500 -3.6565 45 1 5.0607 4.2637 -4.2264 46 1 5.7860 6.8940 -8.0594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274319083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:29 Heat of formation + Delta-G solvation = -61.029361 kcal Electronic energy + Delta-G solvation = -30845.022463 eV Core-core repulsion = 26700.433547 eV Total energy + Delta-G solvation = -4144.588917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12930 -40.40970 -38.50083 -37.91901 -36.24617 -35.88039 -33.95972 -32.77887 -30.98007 -30.56849 -29.37801 -28.78825 -27.67447 -26.05724 -24.28542 -22.99957 -22.43260 -21.57834 -20.86013 -20.62054 -19.56300 -18.37064 -17.41171 -17.23505 -16.91395 -16.68415 -16.14981 -15.98257 -15.51157 -15.02813 -14.62784 -14.40235 -14.26774 -14.14589 -13.89096 -13.70100 -13.36730 -13.33895 -13.09919 -13.00726 -12.81098 -12.70105 -12.33268 -12.14447 -12.01248 -11.84969 -11.73254 -11.63745 -11.09865 -10.99075 -10.89445 -10.86524 -10.67999 -10.22559 -10.01701 -9.82546 -9.68080 -9.34704 -8.99134 -8.92263 -8.61900 -7.77775 -6.13051 -4.13366 1.08270 1.27129 1.92114 2.52134 2.73024 2.95829 3.27092 3.35758 3.42288 3.72252 3.77357 3.93880 4.04511 4.39589 4.41126 4.42405 4.65830 4.88620 4.90774 4.94659 4.98988 5.06892 5.20667 5.22952 5.29019 5.32524 5.39010 5.40377 5.42882 5.55556 5.57341 5.70070 5.72132 5.79798 5.88102 6.05200 6.09790 6.14341 6.28289 6.38016 6.43991 6.62365 6.77348 7.03966 7.13584 7.25019 7.36541 7.63522 8.07675 8.14113 8.39067 8.88266 9.48440 10.99608 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008751 B = 0.004233 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.842161 B = 6613.453074 C = 8635.946750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.668 3.332 4 O -0.569 6.569 5 N -0.598 5.598 6 C 0.107 3.893 7 C -0.098 4.098 8 C -0.070 4.070 9 C 0.160 3.840 10 C -0.143 4.143 11 C -0.059 4.059 12 C -0.152 4.152 13 C -0.077 4.077 14 C -0.137 4.137 15 C 0.168 3.832 16 N -0.548 5.548 17 C 0.120 3.880 18 C -0.024 4.024 19 C -0.524 4.524 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.897 5.897 23 Si 0.876 3.124 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.537 3.463 28 O -0.480 6.480 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.016 0.984 45 H 0.021 0.979 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -11.320 23.152 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.282 6.282 3 C 0.423 3.577 4 O -0.458 6.458 5 N -0.339 5.339 6 C -0.015 4.015 7 C -0.136 4.136 8 C -0.074 4.074 9 C 0.038 3.962 10 C -0.146 4.146 11 C -0.078 4.078 12 C -0.171 4.171 13 C -0.096 4.096 14 C -0.158 4.158 15 C 0.071 3.929 16 N -0.268 5.268 17 C 0.000 4.000 18 C -0.062 4.062 19 C -0.562 4.562 20 H 0.094 0.906 21 C -0.128 4.128 22 N -0.536 5.536 23 Si 0.703 3.297 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.191 1.191 27 C 0.324 3.676 28 O -0.352 6.352 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.035 0.965 45 H 0.039 0.961 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.103 -11.317 22.376 25.075 hybrid contribution -0.765 0.833 0.059 1.132 sum -0.868 -10.484 22.434 24.778 Atomic orbital electron populations 1.23200 0.74408 1.03389 1.02800 1.86239 1.24076 1.30797 1.87074 1.17424 0.81678 0.82252 0.76338 1.91019 1.63716 1.35030 1.56037 1.46959 1.01845 1.08896 1.76245 1.22140 0.87904 0.88549 1.02933 1.22400 0.96420 0.92111 1.02718 1.20308 0.95094 0.97279 0.94735 1.21772 0.86569 0.86027 1.01832 1.19203 0.99392 1.02499 0.93531 1.20116 0.95799 0.96649 0.95188 1.20951 0.97754 0.99881 0.98482 1.20913 0.99009 0.98273 0.91407 1.20512 0.96950 0.99119 0.99252 1.18424 0.93692 0.94601 0.86233 1.46475 1.31377 1.41603 1.07391 1.21944 1.00531 1.00864 0.76642 1.19896 0.96081 0.92597 0.97595 1.20868 1.25279 1.14941 0.95147 0.90642 1.24931 0.96255 0.96960 0.94678 1.69894 1.43138 1.29479 1.11048 0.86830 0.82022 0.80860 0.79993 1.20066 1.21069 1.19071 1.19811 0.79730 0.78765 0.89313 1.90782 1.41081 1.44201 1.59141 0.91726 0.87967 0.91930 0.90221 0.90456 0.89001 0.88665 0.89275 0.89346 0.85733 0.85533 0.85274 0.85000 0.89643 0.90077 0.96547 0.96063 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -4.76 10.17 -40.32 -0.41 -5.17 16 3 C 0.67 10.32 8.62 54.05 0.47 10.79 16 4 O -0.57 -10.48 16.41 -19.28 -0.32 -10.80 16 5 N -0.60 -8.17 3.34 -176.71 -0.59 -8.76 16 6 C 0.11 1.12 6.76 -2.88 -0.02 1.10 16 7 C -0.10 -0.93 5.96 -25.50 -0.15 -1.09 16 8 C -0.07 -0.91 0.78 -156.86 -0.12 -1.03 16 9 C 0.16 2.14 5.91 -3.12 -0.02 2.12 16 10 C -0.14 -1.73 5.10 -104.83 -0.53 -2.26 16 11 C -0.06 -0.55 9.98 -39.73 -0.40 -0.95 16 12 C -0.15 -1.34 10.06 -39.51 -0.40 -1.73 16 13 C -0.08 -0.78 10.02 -39.67 -0.40 -1.18 16 14 C -0.14 -1.78 9.73 -39.31 -0.38 -2.16 16 15 C 0.17 2.46 6.71 -83.49 -0.56 1.90 16 16 N -0.55 -9.59 2.75 -113.52 -0.31 -9.90 16 17 C 0.12 2.38 5.70 -4.04 -0.02 2.36 16 18 C -0.02 -0.57 4.37 -27.88 -0.12 -0.69 16 19 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 20 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 21 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 22 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 23 Si 0.88 22.33 27.46 -169.99 -4.67 17.66 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.27 -6.81 6.55 56.52 0.37 -6.44 16 27 C 0.54 9.40 6.82 -11.27 -0.08 9.32 16 28 O -0.48 -9.97 17.62 5.56 0.10 -9.87 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.09 0.86 8.00 -51.93 -0.42 0.45 16 35 H 0.09 0.64 8.04 -51.93 -0.42 0.23 16 36 H 0.09 0.96 8.03 -51.92 -0.42 0.55 16 37 H 0.09 1.44 7.94 -51.93 -0.41 1.03 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.13 1.74 7.69 -52.49 -0.40 1.33 16 42 H 0.09 1.77 7.98 -51.93 -0.41 1.36 16 43 H 0.08 1.47 7.61 -51.93 -0.39 1.07 16 44 H 0.02 0.39 7.56 -51.93 -0.39 0.00 16 45 H 0.02 0.56 7.21 -51.93 -0.37 0.18 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -36.16 385.90 -8.32 -44.48 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.61 Total: -1.70 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.10 Total: 5.02 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.13 Total: -45.45 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.63 Total: -25.83 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.16 -8.32 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274319083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.547 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds