Wall clock time and date at job start Wed Apr 1 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34638 * 116.99876 * 2 1 4 4 O 1.21511 * 120.00098 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99595 * 179.97438 * 3 2 1 6 6 C 1.47129 * 125.61553 * 359.97145 * 5 3 2 7 7 C 1.54555 * 107.32664 * 179.10617 * 6 5 3 8 8 C 1.53799 * 102.79584 * 339.04490 * 7 6 5 9 9 C 1.47701 * 125.60727 * 180.02562 * 5 3 2 10 10 C 1.49844 * 112.01175 * 154.90372 * 8 7 6 11 11 C 1.37709 * 133.81272 * 301.81668 * 10 8 7 12 12 C 1.38353 * 120.07933 * 179.23988 * 11 10 8 13 13 C 1.38305 * 119.84322 * 0.61311 * 12 11 10 14 14 C 1.37924 * 120.31283 * 359.69370 * 13 12 11 15 15 C 1.39266 * 120.24259 * 359.94133 * 14 13 12 16 16 N 1.39715 * 130.80036 * 179.97438 * 15 14 13 17 17 C 1.46499 * 123.93566 * 359.97438 * 16 15 14 18 18 C 1.53004 * 109.47198 * 269.70604 * 17 16 15 19 19 C 1.50701 * 109.47211 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27574 * 19 18 17 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.34844 * 112.12973 * 179.72712 * 16 15 14 28 28 O 1.21279 * 126.77108 * 180.20296 * 27 16 15 29 29 H 1.09002 * 109.46518 * 60.00639 * 1 2 3 30 30 H 1.08995 * 109.47125 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47226 * 300.00503 * 1 2 3 32 32 H 1.09003 * 109.87459 * 59.66407 * 6 5 3 33 33 H 1.09009 * 109.86723 * 298.54248 * 6 5 3 34 34 H 1.08999 * 110.74913 * 220.71817 * 7 6 5 35 35 H 1.09001 * 110.75047 * 97.37424 * 7 6 5 36 36 H 1.09008 * 110.38393 * 83.82921 * 9 5 3 37 37 H 1.09002 * 110.38902 * 321.45487 * 9 5 3 38 38 H 1.08003 * 119.95759 * 359.91905 * 11 10 8 39 39 H 1.07992 * 120.07622 * 180.21188 * 12 11 10 40 40 H 1.08001 * 119.84094 * 179.66887 * 13 12 11 41 41 H 1.08000 * 119.87838 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47602 * 149.70154 * 17 16 15 43 43 H 1.09007 * 109.47337 * 29.69869 * 17 16 15 44 44 H 1.09000 * 109.47211 * 59.99311 * 18 17 16 45 45 H 1.09007 * 109.46376 * 299.99853 * 18 17 16 46 46 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.3273 0.1205 0.0017 7 6 5.7673 0.6814 -0.0211 8 6 5.5699 2.1045 -0.5701 9 6 4.2052 2.5143 0.0011 10 6 6.6664 3.0301 -0.1385 11 6 7.1481 3.4312 1.0876 12 6 8.2132 4.3112 1.1601 13 6 8.7848 4.7971 -0.0018 14 6 8.3022 4.4035 -1.2324 15 6 7.2354 3.5122 -1.3151 16 7 6.5797 2.9735 -2.4251 17 6 6.9331 3.2819 -3.8129 18 6 6.1250 4.4910 -4.2884 19 6 6.4881 4.8078 -5.7163 20 1 7.2222 4.2071 -6.2328 21 6 5.8878 5.8683 -6.3612 22 7 6.2086 6.1482 -7.6056 23 14 4.6185 6.9075 -5.4676 24 1 5.2977 8.0335 -4.7776 25 1 3.6404 7.4451 -6.4472 26 1 3.9085 6.0702 -4.4676 27 6 5.5871 2.1327 -2.0701 28 8 4.8536 1.5193 -2.8161 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.1544 -0.4928 -0.8827 33 1 4.1754 -0.4741 0.9027 34 1 6.3998 0.0948 -0.6874 35 1 6.1865 0.7102 0.9847 36 1 4.3169 2.8931 1.0172 37 1 3.7369 3.2650 -0.6355 38 1 6.7010 3.0497 1.9938 39 1 8.5931 4.6231 2.1217 40 1 9.6128 5.4882 0.0549 41 1 8.7536 4.7877 -2.1352 42 1 6.7076 2.4229 -4.4448 43 1 7.9974 3.5092 -3.8750 44 1 6.3505 5.3500 -3.6565 45 1 5.0607 4.2637 -4.2264 46 1 5.7860 6.8940 -8.0594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274319083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:28 Heat of formation + Delta-G solvation = -84.911579 kcal Electronic energy + Delta-G solvation = -30846.058074 eV Core-core repulsion = 26700.433547 eV Total energy + Delta-G solvation = -4145.624527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.22485 -41.49694 -39.53448 -39.03840 -37.39122 -37.16042 -35.62163 -34.38008 -32.61181 -31.42573 -30.49222 -29.79850 -28.55932 -27.62257 -25.51061 -24.09548 -23.54682 -22.82681 -22.11916 -21.81775 -20.70555 -19.40057 -19.22589 -18.43306 -17.99925 -17.80723 -17.55359 -17.00700 -16.89155 -16.31193 -15.90340 -15.59643 -15.40514 -15.28691 -15.08016 -14.92985 -14.62440 -14.52220 -14.32415 -14.25019 -14.10388 -13.82090 -13.76477 -13.20430 -13.05794 -13.00221 -12.90143 -12.68000 -12.61352 -12.45126 -12.13801 -11.98962 -11.88575 -11.87093 -11.73999 -11.64071 -11.22859 -10.98770 -10.89474 -9.97771 -9.78352 -8.88873 -8.42644 -6.47629 0.14824 0.42817 0.93964 1.21165 1.25605 1.32508 1.36439 1.58597 1.70692 2.22675 2.80214 2.88564 2.91591 2.92582 3.06617 3.43992 3.51952 3.77580 3.97096 4.04747 4.13412 4.19377 4.27396 4.29984 4.30642 4.33581 4.40111 4.45153 4.56932 4.59291 4.61841 4.65321 4.70376 4.77711 4.91566 4.95129 5.01028 5.09463 5.10440 5.13717 5.18646 5.43650 5.51249 5.63463 5.67633 5.86254 6.09538 6.17999 6.19663 6.57372 6.75731 7.03289 7.17593 8.73324 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008751 B = 0.004233 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.842161 B = 6613.453074 C = 8635.946750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.368 6.368 3 C 0.660 3.340 4 O -0.610 6.610 5 N -0.600 5.600 6 C 0.104 3.896 7 C -0.087 4.087 8 C -0.059 4.059 9 C 0.159 3.841 10 C -0.135 4.135 11 C -0.049 4.049 12 C -0.131 4.131 13 C -0.077 4.077 14 C -0.153 4.153 15 C 0.121 3.879 16 N -0.556 5.556 17 C 0.132 3.868 18 C -0.011 4.011 19 C -0.533 4.533 20 H 0.047 0.953 21 C 0.021 3.979 22 N -0.937 5.937 23 Si 0.938 3.062 24 H -0.253 1.253 25 H -0.277 1.277 26 H -0.273 1.273 27 C 0.520 3.480 28 O -0.533 6.533 29 H 0.050 0.950 30 H 0.141 0.859 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.047 0.953 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.117 0.883 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.023 0.977 45 H -0.005 1.005 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -11.365 28.274 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.281 6.281 3 C 0.415 3.585 4 O -0.502 6.502 5 N -0.341 5.341 6 C -0.017 4.017 7 C -0.125 4.125 8 C -0.063 4.063 9 C 0.038 3.962 10 C -0.138 4.138 11 C -0.067 4.067 12 C -0.150 4.150 13 C -0.096 4.096 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.277 5.277 17 C 0.011 3.989 18 C -0.049 4.049 19 C -0.571 4.571 20 H 0.066 0.934 21 C -0.178 4.178 22 N -0.577 5.577 23 Si 0.762 3.238 24 H -0.178 1.178 25 H -0.202 1.202 26 H -0.198 1.198 27 C 0.309 3.691 28 O -0.409 6.409 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.066 0.934 38 H 0.184 0.816 39 H 0.185 0.815 40 H 0.172 0.828 41 H 0.135 0.865 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.041 0.959 45 H 0.013 0.987 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.908 -11.368 27.544 29.811 hybrid contribution -0.973 0.833 -1.530 1.995 sum -0.065 -10.535 26.014 28.066 Atomic orbital electron populations 1.23531 0.72688 1.05819 1.02432 1.86252 1.25780 1.29385 1.86659 1.17713 0.82263 0.82406 0.76104 1.90978 1.64795 1.36419 1.58030 1.47129 1.01687 1.10034 1.75222 1.22359 0.87806 0.87706 1.03822 1.22540 0.95881 0.89245 1.04795 1.20180 0.95312 0.99979 0.90878 1.21859 0.86226 0.85329 1.02828 1.19297 0.98601 1.02084 0.93796 1.20597 0.95322 0.95701 0.95119 1.21474 0.96260 0.97768 0.99497 1.21270 0.99439 0.98224 0.90628 1.20652 0.97020 0.99425 1.00325 1.18749 0.95609 0.97057 0.85932 1.46399 1.32155 1.42178 1.06935 1.21470 1.00469 0.98176 0.78763 1.19689 0.95001 0.94675 0.95533 1.21159 1.24476 1.14424 0.97025 0.93449 1.25757 0.98266 0.98352 0.95410 1.70008 1.44653 1.30500 1.12552 0.85850 0.79602 0.79527 0.78829 1.17764 1.20201 1.19848 1.20733 0.78803 0.77902 0.91636 1.90732 1.42884 1.46316 1.60947 0.93104 0.84087 0.91371 0.92133 0.86821 0.89079 0.84170 0.85575 0.93438 0.81574 0.81537 0.82813 0.86532 0.91555 0.88643 0.95872 0.98667 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 10.56 113.37 1.20 2.09 16 2 O -0.37 -9.28 10.17 -55.48 -0.56 -9.85 16 3 C 0.66 20.43 8.62 129.79 1.12 21.55 16 4 O -0.61 -23.07 16.41 19.81 0.33 -22.74 16 5 N -0.60 -15.87 3.34 -943.39 -3.15 -19.02 16 6 C 0.10 1.97 6.76 86.79 0.59 2.55 16 7 C -0.09 -1.39 5.96 31.39 0.19 -1.20 16 8 C -0.06 -1.46 0.78 -53.71 -0.04 -1.50 16 9 C 0.16 4.09 5.91 86.32 0.51 4.60 16 10 C -0.13 -2.87 5.10 -20.00 -0.10 -2.97 16 11 C -0.05 -0.63 9.98 22.17 0.22 -0.41 16 12 C -0.13 -1.52 10.06 22.31 0.22 -1.30 16 13 C -0.08 -1.26 10.02 22.21 0.22 -1.04 16 14 C -0.15 -3.80 9.73 22.44 0.22 -3.58 16 15 C 0.12 3.47 6.71 38.39 0.26 3.73 16 16 N -0.56 -20.27 2.75 -631.40 -1.74 -22.01 16 17 C 0.13 5.63 5.70 86.38 0.49 6.12 16 18 C -0.01 -0.55 4.37 29.85 0.13 -0.42 16 19 C -0.53 -31.64 9.66 25.60 0.25 -31.39 16 20 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 21 C 0.02 1.26 5.47 84.65 0.46 1.72 16 22 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 23 Si 0.94 47.14 27.46 68.60 1.88 49.02 16 24 H -0.25 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.27 -13.98 6.55 99.48 0.65 -13.33 16 27 C 0.52 19.01 6.82 87.44 0.60 19.61 16 28 O -0.53 -23.80 17.62 -3.03 -0.05 -23.85 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.09 1.52 8.00 -2.39 -0.02 1.50 16 35 H 0.14 1.03 8.04 -2.39 -0.02 1.01 16 36 H 0.13 2.28 8.03 -2.38 -0.02 2.26 16 37 H 0.05 1.61 7.94 -2.39 -0.02 1.59 16 38 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.12 3.13 7.69 -2.91 -0.02 3.10 16 42 H 0.07 3.01 7.98 -2.39 -0.02 2.99 16 43 H 0.10 3.69 7.61 -2.38 -0.02 3.67 16 44 H 0.02 1.14 7.56 -2.39 -0.02 1.12 16 45 H -0.01 -0.28 7.21 -2.38 -0.02 -0.30 16 46 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -86.46 385.90 4.47 -81.99 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.93 Total: 7.35 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 6.53 Total: 18.17 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -4.59 Total: -100.09 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -0.29 Total: -56.44 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.88 Total: 49.02 kcal Total: -86.46 4.47 -81.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274319083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.919 kcal (2) G-P(sol) polarization free energy of solvation -86.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds