Wall clock time and date at job start Wed Apr 1 2020 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00561 * 2 1 4 4 H 1.48493 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46861 * 299.99942 * 3 2 1 6 6 H 1.48500 * 109.47063 * 59.99460 * 3 2 1 7 7 C 1.38819 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00520 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00063 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47111 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.91098 * 43.75037 * 11 10 9 13 13 C 1.53781 * 113.61480 * 175.00222 * 11 10 9 14 14 C 1.53786 * 87.17350 * 139.93948 * 13 11 10 15 15 H 1.09000 * 113.61138 * 220.06261 * 14 13 11 16 16 N 1.46496 * 113.61518 * 89.15486 * 14 13 11 17 17 C 1.34779 * 119.99390 * 154.99856 * 16 14 13 18 18 O 1.21277 * 120.00682 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99369 * 180.02562 * 17 16 14 20 20 S 1.81399 * 109.46963 * 180.02562 * 19 17 16 21 21 O 1.42106 * 108.57697 * 294.48586 * 20 19 17 22 22 O 1.42104 * 108.58203 * 65.50956 * 20 19 17 23 23 C 1.81398 * 101.92261 * 179.97438 * 20 19 17 24 24 C 1.54263 * 110.03345 * 302.16684 * 23 20 19 25 25 C 1.54887 * 104.19455 * 217.10444 * 24 23 20 26 26 C 1.54894 * 102.75026 * 37.94078 * 25 24 23 27 27 C 1.53875 * 110.03391 * 184.99762 * 23 20 19 28 28 C 1.53782 * 113.61259 * 272.50057 * 11 10 9 29 29 H 0.97000 * 119.99271 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99483 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47006 * 60.00531 * 10 9 7 32 32 H 1.09002 * 109.47617 * 299.99986 * 10 9 7 33 33 H 1.09002 * 113.61445 * 254.52948 * 13 11 10 34 34 H 1.09002 * 113.61408 * 25.34678 * 13 11 10 35 35 H 0.97001 * 120.00117 * 335.00621 * 16 14 13 36 36 H 1.09002 * 109.47174 * 300.00130 * 19 17 16 37 37 H 1.09002 * 109.47481 * 60.00351 * 19 17 16 38 38 H 1.09003 * 110.01553 * 63.60718 * 23 20 19 39 39 H 1.09001 * 110.48745 * 335.77984 * 24 23 20 40 40 H 1.08995 * 110.48987 * 98.42662 * 24 23 20 41 41 H 1.09003 * 110.76014 * 279.62408 * 25 24 23 42 42 H 1.09000 * 110.75450 * 156.25790 * 25 24 23 43 43 H 1.09000 * 110.48485 * 203.37565 * 26 25 24 44 44 H 1.09002 * 110.59637 * 80.79418 * 26 25 24 45 45 H 1.09006 * 110.03534 * 238.57294 * 27 23 20 46 46 H 1.08998 * 110.02967 * 359.94813 * 27 23 20 47 47 H 1.08997 * 113.61668 * 334.56352 * 28 11 10 48 48 H 1.08998 * 113.61674 * 105.38861 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2024 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.2364 -4.6711 -0.6917 13 6 1.7301 -6.2002 -0.1205 14 6 0.7065 -6.7017 0.9119 15 1 1.1271 -7.3902 1.6448 16 7 -0.5368 -7.1945 0.3140 17 6 -1.2913 -8.0951 0.9745 18 8 -0.9413 -8.4971 2.0638 19 6 -2.5700 -8.6025 0.3592 20 16 -3.3512 -9.7927 1.4834 21 8 -2.5092 -10.9321 1.5928 22 8 -3.7484 -9.1076 2.6633 23 6 -4.8401 -10.2601 0.5585 24 6 -5.6876 -9.0078 0.2533 25 6 -7.1508 -9.4960 0.3936 26 6 -7.0725 -10.4696 1.5957 27 6 -5.7207 -11.1896 1.4119 28 6 0.6171 -5.2476 1.4102 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.6852 -3.7142 0.8911 32 1 2.6839 -3.7151 -0.8888 33 1 1.6158 -6.6543 -1.1048 34 1 2.7590 -6.2218 0.2387 35 1 -0.8169 -6.8728 -0.5571 36 1 -3.2477 -7.7662 0.1879 37 1 -2.3479 -9.0905 -0.5899 38 1 -4.5614 -10.7586 -0.3700 39 1 -5.4775 -8.2195 0.9762 40 1 -5.4981 -8.6569 -0.7611 41 1 -7.4715 -10.0193 -0.5072 42 1 -7.8167 -8.6619 0.6147 43 1 -7.8939 -11.1854 1.5609 44 1 -7.0870 -9.9193 2.5365 45 1 -5.8701 -12.1388 0.8974 46 1 -5.2530 -11.3604 2.3815 47 1 1.3412 -5.0092 2.1892 48 1 -0.3951 -4.9316 1.6622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277001601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:14 Heat of formation + Delta-G solvation = -83.543011 kcal Electronic energy + Delta-G solvation = -27861.964074 eV Core-core repulsion = 23851.842844 eV Total energy + Delta-G solvation = -4010.121231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.41933 -38.58037 -38.50052 -37.21005 -36.24364 -34.63624 -33.41097 -31.29006 -30.56933 -29.63659 -29.21984 -26.75968 -25.55830 -23.51422 -22.00038 -21.56737 -21.43013 -21.03914 -19.25453 -18.99842 -18.03959 -17.36951 -17.07543 -16.65171 -16.50661 -16.11841 -15.69329 -15.27953 -14.86030 -14.81571 -14.46717 -14.11427 -14.04335 -13.79858 -13.47110 -13.25587 -13.15321 -12.74771 -12.42876 -12.39788 -12.29615 -12.23138 -12.19551 -11.77997 -11.72103 -11.70283 -11.65438 -11.40004 -11.17224 -11.06613 -10.86139 -10.66005 -10.60300 -10.38121 -10.34681 -10.11465 -9.86617 -9.64728 -9.19005 -8.86936 -6.91793 -5.77633 -3.05737 -0.48926 2.16067 2.33855 2.65497 3.36812 3.42491 3.48225 3.48528 3.50437 3.79407 3.90925 4.14122 4.24556 4.42433 4.56127 4.60150 4.60582 4.68025 4.71671 4.75385 4.76351 4.93743 5.05487 5.08291 5.09846 5.10056 5.29007 5.41776 5.50687 5.53103 5.56766 5.64034 5.77307 5.79327 5.89237 5.92918 6.05466 6.16252 6.24064 6.37695 6.53526 6.75238 6.89764 7.12294 7.69801 7.79286 8.41755 9.52824 10.11638 10.45930 11.45478 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.001988 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.037577 B =14083.744864 C =15190.618952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.136 4.136 14 C 0.109 3.891 15 H 0.104 0.896 16 N -0.695 5.695 17 C 0.544 3.456 18 O -0.529 6.529 19 C -0.663 4.663 20 S 2.450 3.550 21 O -0.922 6.922 22 O -0.913 6.913 23 C -0.584 4.584 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.099 4.099 28 C -0.139 4.139 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.406 0.594 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.665 -25.127 -3.566 28.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.133 4.133 12 H 0.106 0.894 13 C -0.175 4.175 14 C 0.005 3.995 15 H 0.122 0.878 16 N -0.345 5.345 17 C 0.328 3.672 18 O -0.407 6.407 19 C -0.790 4.790 20 S 2.627 3.373 21 O -0.919 6.919 22 O -0.910 6.910 23 C -0.693 4.693 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.166 4.166 27 C -0.137 4.137 28 C -0.177 4.177 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.241 0.759 36 H 0.180 0.820 37 H 0.178 0.822 38 H 0.159 0.841 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.926 -25.568 -1.976 28.718 hybrid contribution -0.226 1.498 -1.507 2.136 sum -13.152 -24.071 -3.482 27.650 Atomic orbital electron populations 1.69671 1.05116 1.25492 1.58039 1.24749 0.95550 0.97729 1.03156 0.86110 0.78783 0.84101 0.77173 1.20563 1.21904 1.21866 1.19297 0.91077 0.84243 1.42307 0.91153 1.42352 1.05830 1.00013 1.89412 1.20638 0.92989 0.85166 0.97758 1.22778 0.99141 0.94299 0.97055 0.89411 1.23317 0.98956 0.96492 0.98738 1.22133 0.84024 0.96405 0.96971 0.87759 1.45518 1.23605 1.42995 1.22391 1.19069 0.83549 0.79490 0.85142 1.90868 1.71666 1.58166 1.19952 1.30904 1.08258 1.20076 1.19796 1.07703 0.76595 0.76158 0.76856 1.93582 1.65058 1.48149 1.85115 1.93595 1.82209 1.74579 1.40584 1.30985 1.18001 1.06619 1.13703 1.22333 0.95810 0.93939 1.03195 1.22442 0.95319 0.99198 0.98584 1.22431 0.96184 0.98543 0.99404 1.21852 0.95364 0.98083 0.98442 1.23462 1.02778 0.93637 0.97836 0.93605 0.78360 0.96108 0.96367 0.91171 0.88440 0.75932 0.82003 0.82201 0.84113 0.89768 0.89474 0.90867 0.90472 0.90671 0.90413 0.89499 0.91116 0.88810 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.68 9.99 -15.05 -0.15 -6.83 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.41 5.60 -59.91 -0.34 -18.75 16 10 C 0.16 3.16 6.10 -4.04 -0.02 3.14 16 11 C -0.11 -1.70 3.64 -89.80 -0.33 -2.03 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 13 C -0.14 -1.58 7.38 -25.92 -0.19 -1.77 16 14 C 0.11 1.37 4.33 -67.02 -0.29 1.08 16 15 H 0.10 1.39 7.47 -51.93 -0.39 1.00 16 16 N -0.69 -7.52 5.27 -52.92 -0.28 -7.80 16 17 C 0.54 6.71 7.85 -10.98 -0.09 6.63 16 18 O -0.53 -8.96 15.22 2.55 0.04 -8.92 16 19 C -0.66 -4.78 5.96 36.01 0.21 -4.57 16 20 S 2.45 24.33 3.12 -107.50 -0.34 23.99 16 21 O -0.92 -12.55 17.95 -59.53 -1.07 -13.62 16 22 O -0.91 -12.63 17.54 -59.52 -1.04 -13.67 16 23 C -0.58 -3.19 3.38 -25.61 -0.09 -3.28 16 24 C -0.11 -0.52 5.52 -25.07 -0.14 -0.66 16 25 C -0.12 -0.53 6.91 -24.74 -0.17 -0.70 16 26 C -0.13 -0.68 6.83 -25.07 -0.17 -0.85 16 27 C -0.10 -0.60 6.48 -25.62 -0.17 -0.77 16 28 C -0.14 -2.04 7.44 -25.82 -0.19 -2.23 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.38 10.10 7.67 -40.82 -0.31 9.78 16 31 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.41 3.20 8.70 -40.82 -0.36 2.85 16 36 H 0.16 0.64 7.67 -51.92 -0.40 0.25 16 37 H 0.16 0.48 8.14 -51.92 -0.42 0.05 16 38 H 0.14 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.42 7.49 -51.93 -0.39 0.03 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.49 7.59 -51.93 -0.39 0.10 16 47 H 0.09 1.41 7.90 -51.93 -0.41 1.00 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -39.59 400.20 -11.26 -50.86 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.09 Total: 5.38 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.88 Total: -13.41 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.11 Total: -54.10 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -2.07 Total: -36.21 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 24.33 SS G_CDS: -0.34 Total: 23.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -39.59 -11.26 -50.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277001601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.687 kcal (2) G-P(sol) polarization free energy of solvation -39.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds