Wall clock time and date at job start Wed Apr 1 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00561 * 2 1 4 4 H 1.48493 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46861 * 299.99942 * 3 2 1 6 6 H 1.48500 * 109.47063 * 59.99460 * 3 2 1 7 7 C 1.38819 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00520 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00063 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47111 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.91098 * 43.75037 * 11 10 9 13 13 C 1.53781 * 113.61480 * 175.00222 * 11 10 9 14 14 C 1.53786 * 87.17350 * 139.93948 * 13 11 10 15 15 H 1.09000 * 113.61138 * 220.06261 * 14 13 11 16 16 N 1.46496 * 113.61518 * 89.15486 * 14 13 11 17 17 C 1.34779 * 119.99390 * 154.99856 * 16 14 13 18 18 O 1.21277 * 120.00682 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99369 * 180.02562 * 17 16 14 20 20 S 1.81399 * 109.46963 * 180.02562 * 19 17 16 21 21 O 1.42106 * 108.57697 * 294.48586 * 20 19 17 22 22 O 1.42104 * 108.58203 * 65.50956 * 20 19 17 23 23 C 1.81398 * 101.92261 * 179.97438 * 20 19 17 24 24 C 1.54263 * 110.03345 * 302.16684 * 23 20 19 25 25 C 1.54887 * 104.19455 * 217.10444 * 24 23 20 26 26 C 1.54894 * 102.75026 * 37.94078 * 25 24 23 27 27 C 1.53875 * 110.03391 * 184.99762 * 23 20 19 28 28 C 1.53782 * 113.61259 * 272.50057 * 11 10 9 29 29 H 0.97000 * 119.99271 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99483 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47006 * 60.00531 * 10 9 7 32 32 H 1.09002 * 109.47617 * 299.99986 * 10 9 7 33 33 H 1.09002 * 113.61445 * 254.52948 * 13 11 10 34 34 H 1.09002 * 113.61408 * 25.34678 * 13 11 10 35 35 H 0.97001 * 120.00117 * 335.00621 * 16 14 13 36 36 H 1.09002 * 109.47174 * 300.00130 * 19 17 16 37 37 H 1.09002 * 109.47481 * 60.00351 * 19 17 16 38 38 H 1.09003 * 110.01553 * 63.60718 * 23 20 19 39 39 H 1.09001 * 110.48745 * 335.77984 * 24 23 20 40 40 H 1.08995 * 110.48987 * 98.42662 * 24 23 20 41 41 H 1.09003 * 110.76014 * 279.62408 * 25 24 23 42 42 H 1.09000 * 110.75450 * 156.25790 * 25 24 23 43 43 H 1.09000 * 110.48485 * 203.37565 * 26 25 24 44 44 H 1.09002 * 110.59637 * 80.79418 * 26 25 24 45 45 H 1.09006 * 110.03534 * 238.57294 * 27 23 20 46 46 H 1.08998 * 110.02967 * 359.94813 * 27 23 20 47 47 H 1.08997 * 113.61668 * 334.56352 * 28 11 10 48 48 H 1.08998 * 113.61674 * 105.38861 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2024 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.2364 -4.6711 -0.6917 13 6 1.7301 -6.2002 -0.1205 14 6 0.7065 -6.7017 0.9119 15 1 1.1271 -7.3902 1.6448 16 7 -0.5368 -7.1945 0.3140 17 6 -1.2913 -8.0951 0.9745 18 8 -0.9413 -8.4971 2.0638 19 6 -2.5700 -8.6025 0.3592 20 16 -3.3512 -9.7927 1.4834 21 8 -2.5092 -10.9321 1.5928 22 8 -3.7484 -9.1076 2.6633 23 6 -4.8401 -10.2601 0.5585 24 6 -5.6876 -9.0078 0.2533 25 6 -7.1508 -9.4960 0.3936 26 6 -7.0725 -10.4696 1.5957 27 6 -5.7207 -11.1896 1.4119 28 6 0.6171 -5.2476 1.4102 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.6852 -3.7142 0.8911 32 1 2.6839 -3.7151 -0.8888 33 1 1.6158 -6.6543 -1.1048 34 1 2.7590 -6.2218 0.2387 35 1 -0.8169 -6.8728 -0.5571 36 1 -3.2477 -7.7662 0.1879 37 1 -2.3479 -9.0905 -0.5899 38 1 -4.5614 -10.7586 -0.3700 39 1 -5.4775 -8.2195 0.9762 40 1 -5.4981 -8.6569 -0.7611 41 1 -7.4715 -10.0193 -0.5072 42 1 -7.8167 -8.6619 0.6147 43 1 -7.8939 -11.1854 1.5609 44 1 -7.0870 -9.9193 2.5365 45 1 -5.8701 -12.1388 0.8974 46 1 -5.2530 -11.3604 2.3815 47 1 1.3412 -5.0092 2.1892 48 1 -0.3951 -4.9316 1.6622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277001601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:10 Heat of formation + Delta-G solvation = -114.679583 kcal Electronic energy + Delta-G solvation = -27863.314257 eV Core-core repulsion = 23851.842844 eV Total energy + Delta-G solvation = -4011.471414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -41.44531 -39.66150 -38.96535 -38.03104 -37.07844 -36.37841 -34.67788 -32.93534 -31.55365 -30.06535 -29.66972 -28.37412 -26.65684 -25.28244 -23.19693 -22.58478 -22.00146 -21.58774 -20.41890 -19.72294 -19.09793 -18.75702 -18.09883 -17.49932 -17.23906 -16.81108 -16.64918 -16.51216 -16.08595 -15.76833 -15.64960 -15.32587 -15.12367 -14.84479 -14.56553 -14.42149 -13.82682 -13.76464 -13.71337 -13.39398 -13.16966 -13.13649 -13.09770 -12.93563 -12.81435 -12.74169 -12.19418 -12.15802 -12.11375 -12.05583 -11.95075 -11.94589 -11.80681 -11.51150 -11.43845 -11.38290 -11.20421 -11.11091 -10.87516 -10.20913 -8.97903 -7.95873 -5.23697 -1.16968 1.25564 1.46777 1.47764 1.57686 1.69557 1.83203 2.55659 2.73112 2.91830 3.31080 3.37268 3.40387 3.46466 3.55250 3.56773 3.86703 3.89535 3.92000 3.96131 4.21397 4.22323 4.32343 4.35291 4.41666 4.52608 4.53776 4.73260 4.74155 4.78280 4.82577 4.84800 4.90084 4.96812 4.97470 5.07229 5.12223 5.17353 5.22268 5.23728 5.30521 5.43359 5.48717 5.61021 6.24520 6.27687 6.95335 7.33552 8.11494 8.33710 9.27956 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.001988 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.037577 B =14083.744864 C =15190.618952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.158 3.842 11 C -0.109 4.109 12 H 0.092 0.908 13 C -0.113 4.113 14 C 0.115 3.885 15 H 0.094 0.906 16 N -0.683 5.683 17 C 0.530 3.470 18 O -0.586 6.586 19 C -0.647 4.647 20 S 2.421 3.579 21 O -0.977 6.977 22 O -0.974 6.974 23 C -0.547 4.547 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.135 4.135 27 C -0.115 4.115 28 C -0.146 4.146 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.018 0.982 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.423 0.577 36 H 0.201 0.799 37 H 0.213 0.787 38 H 0.185 0.815 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.049 0.951 47 H 0.084 0.916 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.132 -25.797 -6.940 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.128 4.128 12 H 0.111 0.889 13 C -0.152 4.152 14 C 0.010 3.990 15 H 0.112 0.888 16 N -0.334 5.334 17 C 0.316 3.684 18 O -0.467 6.467 19 C -0.776 4.776 20 S 2.607 3.393 21 O -0.974 6.974 22 O -0.971 6.971 23 C -0.660 4.660 24 C -0.163 4.163 25 C -0.155 4.155 26 C -0.173 4.173 27 C -0.154 4.154 28 C -0.185 4.185 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.262 0.738 36 H 0.218 0.782 37 H 0.230 0.770 38 H 0.203 0.797 39 H 0.092 0.908 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.128 0.872 46 H 0.067 0.933 47 H 0.102 0.898 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.336 -26.264 -5.339 29.936 hybrid contribution -0.116 1.670 -0.463 1.737 sum -13.452 -24.594 -5.802 28.626 Atomic orbital electron populations 1.69817 1.06556 1.25957 1.59724 1.25570 0.96454 1.01113 1.03892 0.85077 0.78230 0.79829 0.76662 1.19095 1.21832 1.22238 1.19699 0.91521 0.85547 1.40841 0.90741 1.42579 1.05624 1.01248 1.89284 1.20835 0.93825 0.84566 0.97542 1.22701 0.98682 0.94253 0.97161 0.88936 1.23220 0.98765 0.93339 0.99848 1.21950 0.85181 0.94608 0.97286 0.88824 1.45431 1.22814 1.42334 1.22857 1.19915 0.84862 0.79050 0.84596 1.90856 1.73261 1.60003 1.22557 1.30783 1.05817 1.20631 1.20395 1.08045 0.77844 0.75703 0.77681 1.93511 1.67398 1.49922 1.86529 1.93521 1.83176 1.75417 1.44984 1.30736 1.14018 1.07470 1.13807 1.22572 0.95466 0.93038 1.05189 1.22500 0.95327 0.99109 0.98605 1.22497 0.96247 0.99103 0.99406 1.22064 0.95709 0.99540 0.98043 1.23481 1.01545 0.95717 0.97755 0.94031 0.79478 0.96407 0.95793 0.88320 0.87593 0.73840 0.78214 0.76964 0.79745 0.90767 0.85588 0.88975 0.90246 0.89318 0.92209 0.87200 0.93251 0.89786 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -37.45 5.60 -343.46 -1.92 -39.37 16 10 C 0.16 6.05 6.10 86.38 0.53 6.58 16 11 C -0.11 -3.11 3.64 -10.27 -0.04 -3.14 16 12 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 13 C -0.11 -2.32 7.38 31.12 0.23 -2.09 16 14 C 0.12 2.77 4.33 45.58 0.20 2.96 16 15 H 0.09 2.51 7.47 -2.39 -0.02 2.49 16 16 N -0.68 -13.41 5.27 -439.74 -2.32 -15.73 16 17 C 0.53 12.56 7.85 87.66 0.69 13.25 16 18 O -0.59 -20.63 15.22 -0.15 0.00 -20.63 16 19 C -0.65 -7.49 5.96 71.24 0.42 -7.07 16 20 S 2.42 47.92 3.12 -56.49 -0.18 47.74 16 21 O -0.98 -27.78 17.95 -125.74 -2.26 -30.04 16 22 O -0.97 -29.16 17.54 -125.76 -2.21 -31.37 16 23 C -0.55 -4.44 3.38 31.32 0.11 -4.33 16 24 C -0.12 -0.69 5.52 31.67 0.17 -0.51 16 25 C -0.12 -0.70 6.91 31.89 0.22 -0.48 16 26 C -0.13 -1.28 6.83 31.67 0.22 -1.06 16 27 C -0.11 -1.25 6.48 31.32 0.20 -1.05 16 28 C -0.15 -4.31 7.44 31.18 0.23 -4.08 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.37 19.90 7.67 -92.71 -0.71 19.19 16 31 H 0.02 0.70 7.84 -2.39 -0.02 0.68 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.11 2.05 8.10 -2.39 -0.02 2.03 16 35 H 0.42 5.17 8.70 -92.71 -0.81 4.37 16 36 H 0.20 0.76 7.67 -2.39 -0.02 0.74 16 37 H 0.21 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.19 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.07 0.60 7.49 -2.39 -0.02 0.58 16 40 H 0.13 -0.23 8.14 -2.39 -0.02 -0.24 16 41 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.05 0.75 7.59 -2.39 -0.02 0.74 16 47 H 0.08 2.60 7.90 -2.39 -0.02 2.58 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -92.44 400.20 -2.64 -95.08 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.55 Total: 22.94 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 4.49 Total: -17.88 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -3.96 Total: -114.06 kcal Atomic # 8 Polarization: -77.57 SS G_CDS: -4.46 Total: -82.04 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 47.92 SS G_CDS: -0.18 Total: 47.74 kcal Total: -92.44 -2.64 -95.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277001601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.599 kcal (2) G-P(sol) polarization free energy of solvation -92.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds