Wall clock time and date at job start Wed Apr 1 2020 02:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99912 * 2 1 4 4 H 1.48506 * 109.46884 * 239.99675 * 3 2 1 5 5 H 1.48490 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47016 * 120.00237 * 3 2 1 7 7 C 1.38811 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99990 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00499 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47427 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47062 * 64.99563 * 11 10 9 13 13 N 1.46500 * 109.46708 * 304.99316 * 11 10 9 14 14 C 1.34776 * 119.99594 * 124.58429 * 13 11 10 15 15 O 1.21289 * 120.00162 * 354.73923 * 14 13 11 16 16 C 1.50701 * 120.00357 * 174.73402 * 14 13 11 17 17 H 1.08996 * 110.01026 * 301.38566 * 16 14 13 18 18 C 1.53879 * 110.06236 * 62.78444 * 16 14 13 19 19 C 1.54175 * 108.70124 * 166.49772 * 18 16 14 20 20 S 1.83538 * 105.11045 * 332.10736 * 19 18 16 21 21 O 1.42097 * 109.49188 * 248.75937 * 20 19 18 22 22 O 1.42102 * 109.38806 * 115.41324 * 20 19 18 23 23 C 1.55038 * 110.03218 * 180.02562 * 16 14 13 24 24 C 1.52999 * 109.46721 * 184.99900 * 11 10 9 25 25 C 1.54261 * 110.03301 * 301.26184 * 24 11 10 26 26 C 1.54893 * 104.19868 * 217.10850 * 25 24 11 27 27 C 1.54889 * 102.74511 * 37.94100 * 26 25 24 28 28 C 1.53881 * 110.02776 * 184.09569 * 24 11 10 29 29 H 0.97000 * 120.00109 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99910 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46927 * 59.99159 * 10 9 7 32 32 H 1.09003 * 109.46477 * 299.99827 * 10 9 7 33 33 H 0.96994 * 120.00607 * 304.58428 * 13 11 10 34 34 H 1.09001 * 109.65006 * 286.34725 * 18 16 14 35 35 H 1.09002 * 109.64708 * 46.64604 * 18 16 14 36 36 H 1.08998 * 110.31722 * 90.99636 * 19 18 16 37 37 H 1.09003 * 110.31677 * 213.19134 * 19 18 16 38 38 H 1.09000 * 110.79590 * 316.50149 * 23 16 14 39 39 H 1.09000 * 110.79027 * 79.76582 * 23 16 14 40 40 H 1.08995 * 110.02220 * 62.71006 * 24 11 10 41 41 H 1.09002 * 110.48964 * 335.78757 * 25 24 11 42 42 H 1.08996 * 110.48608 * 98.43425 * 25 24 11 43 43 H 1.09001 * 110.75578 * 279.63153 * 26 25 24 44 44 H 1.08997 * 110.75691 * 156.25720 * 26 25 24 45 45 H 1.09004 * 110.48570 * 203.37703 * 27 26 25 46 46 H 1.09003 * 110.48585 * 80.73910 * 27 26 25 47 47 H 1.08999 * 110.03202 * 238.56870 * 28 24 11 48 48 H 1.09001 * 110.03265 * 359.95437 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.4978 -4.8134 -0.9327 13 7 0.1440 -4.6763 1.1300 14 6 -1.1869 -4.6557 0.9180 15 8 -1.6206 -4.6596 -0.2147 16 6 -2.1361 -4.6279 2.0881 17 1 -1.9718 -5.4989 2.7225 18 6 -1.9333 -3.3376 2.9018 19 6 -3.1215 -3.1720 3.8702 20 16 -4.5278 -4.0209 3.0516 21 8 -5.4919 -3.0587 2.6468 22 8 -4.9252 -5.1379 3.8350 23 6 -3.6017 -4.6085 1.5828 24 6 1.8246 -6.1412 0.1245 25 6 2.8205 -6.2908 -1.0440 26 6 2.7792 -7.8006 -1.3875 27 6 1.2817 -8.1518 -1.2046 28 6 0.8461 -7.3244 0.0224 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6848 -3.7145 0.8894 32 1 2.6846 -3.7145 -0.8906 33 1 0.4927 -4.5962 2.0316 34 1 -1.0048 -3.4040 3.4689 35 1 -1.8881 -2.4824 2.2275 36 1 -2.8990 -3.6452 4.8265 37 1 -3.3486 -2.1156 4.0134 38 1 -3.7150 -3.9136 0.7507 39 1 -3.9252 -5.6090 1.2958 40 1 2.3557 -6.1770 1.0756 41 1 2.4979 -5.6961 -1.8987 42 1 3.8227 -5.9981 -0.7309 43 1 3.3972 -8.3714 -0.6945 44 1 3.0930 -7.9712 -2.4173 45 1 1.1610 -9.2172 -1.0088 46 1 0.7106 -7.8577 -2.0852 47 1 0.9031 -7.9349 0.9237 48 1 -0.1708 -6.9572 -0.1159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278250735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:34 Heat of formation + Delta-G solvation = -112.885402 kcal Electronic energy + Delta-G solvation = -29580.865987 eV Core-core repulsion = 25569.472375 eV Total energy + Delta-G solvation = -4011.393612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.16100 -38.35555 -37.11606 -36.18712 -35.83468 -35.31222 -33.60864 -31.30323 -30.16399 -29.70204 -28.64759 -26.52663 -25.62354 -23.42905 -22.57799 -21.31907 -20.51376 -20.10600 -19.53029 -18.93650 -17.61674 -17.14957 -16.97429 -16.24255 -15.79232 -15.69553 -15.42705 -15.20763 -14.54864 -14.53223 -14.47322 -13.92296 -13.82713 -13.34248 -13.25678 -13.18998 -12.64480 -12.61994 -12.36890 -12.24446 -12.11847 -12.09498 -11.97357 -11.45916 -11.33321 -11.16616 -11.09123 -11.02190 -10.96439 -10.86518 -10.83726 -10.67046 -10.54572 -10.44487 -10.31563 -10.11960 -9.76448 -9.60160 -8.92512 -8.68910 -6.96367 -5.79873 -3.08954 -0.05930 2.37662 2.78064 3.32295 3.40145 3.45349 3.46366 3.46874 3.92407 4.13196 4.45184 4.50295 4.53790 4.63011 4.65985 4.72931 4.75334 4.75906 5.04215 5.20993 5.28138 5.46016 5.49221 5.51483 5.51817 5.57239 5.59013 5.65971 5.69097 5.79958 5.84245 5.87153 5.94621 5.97348 6.00069 6.08383 6.23100 6.27614 6.33613 6.42906 6.46107 6.63350 6.89888 7.64745 7.72224 8.38465 8.43971 9.50213 10.07484 10.43057 11.42299 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.006648 B = 0.004865 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4210.768561 B = 5753.755847 C = 9432.951989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.242 4.242 8 H 0.068 0.932 9 N -0.728 5.728 10 C 0.143 3.857 11 C 0.137 3.863 12 H 0.101 0.899 13 N -0.708 5.708 14 C 0.533 3.467 15 O -0.529 6.529 16 C -0.109 4.109 17 H 0.116 0.884 18 C -0.111 4.111 19 C -0.581 4.581 20 S 2.382 3.618 21 O -0.936 6.936 22 O -0.942 6.942 23 C -0.565 4.565 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.118 4.118 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.019 0.981 32 H 0.031 0.969 33 H 0.399 0.601 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -15.594 6.325 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.373 4.373 8 H 0.086 0.914 9 N -0.373 5.373 10 C 0.015 3.985 11 C 0.032 3.968 12 H 0.119 0.881 13 N -0.358 5.358 14 C 0.317 3.683 15 O -0.405 6.405 16 C -0.132 4.132 17 H 0.134 0.866 18 C -0.149 4.149 19 C -0.711 4.711 20 S 2.566 3.434 21 O -0.933 6.933 22 O -0.939 6.939 23 C -0.695 4.695 24 C -0.117 4.117 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.233 0.767 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.170 0.830 39 H 0.158 0.842 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.744 -15.575 5.775 16.703 hybrid contribution 1.257 1.173 0.278 1.742 sum -0.486 -14.402 6.054 15.630 Atomic orbital electron populations 1.69647 1.05028 1.25761 1.57408 1.24717 0.95487 0.97565 1.02932 0.86303 0.78542 0.83703 0.77794 1.21308 1.21692 1.21379 1.19151 0.90908 0.84166 1.43095 0.91383 1.42289 1.05987 0.99602 1.89419 1.21019 0.93211 0.85847 0.98470 1.21493 0.90759 0.93788 0.90761 0.88069 1.45760 1.05390 1.73745 1.10888 1.19787 0.82831 0.75974 0.89721 1.90724 1.77105 1.49083 1.23554 1.21993 0.92989 1.01050 0.97189 0.86628 1.21939 0.98263 0.97781 0.96939 1.30483 1.15582 1.14742 1.10324 1.09264 0.78360 0.76704 0.79080 1.93629 1.56818 1.61049 1.81790 1.93606 1.81183 1.51235 1.67894 1.30565 1.05858 1.13911 1.19142 1.22095 0.96014 0.94192 0.99397 1.22397 0.98904 0.96034 0.98116 1.22496 0.96367 0.96356 1.00967 1.22353 0.96229 0.99154 0.98479 1.22175 0.99619 0.96050 0.97769 0.93442 0.77975 0.96302 0.95129 0.76710 0.88223 0.87557 0.84616 0.83992 0.82971 0.84225 0.90868 0.90913 0.91386 0.91813 0.91797 0.92193 0.91669 0.92339 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.73 -17.42 5.43 -59.91 -0.33 -17.75 16 10 C 0.14 2.62 5.60 -4.04 -0.02 2.60 16 11 C 0.14 2.04 1.71 -67.93 -0.12 1.92 16 12 H 0.10 1.81 6.91 -51.93 -0.36 1.45 16 13 N -0.71 -9.51 3.97 -53.81 -0.21 -9.73 16 14 C 0.53 7.73 6.42 -10.99 -0.07 7.66 16 15 O -0.53 -9.81 15.12 5.55 0.08 -9.72 16 16 C -0.11 -1.16 2.96 -90.24 -0.27 -1.43 16 17 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.11 -1.15 5.64 -25.66 -0.14 -1.29 16 19 C -0.58 -4.96 7.29 37.77 0.28 -4.69 16 20 S 2.38 25.28 6.14 -107.50 -0.66 24.62 16 21 O -0.94 -13.81 18.15 -57.71 -1.05 -14.85 16 22 O -0.94 -12.21 18.15 -57.71 -1.05 -13.25 16 23 C -0.56 -6.05 6.19 38.23 0.24 -5.82 16 24 C -0.10 -1.12 2.71 -89.50 -0.24 -1.37 16 25 C -0.12 -1.30 5.32 -25.07 -0.13 -1.44 16 26 C -0.12 -1.19 6.91 -24.74 -0.17 -1.37 16 27 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 28 C -0.12 -1.30 6.24 -25.61 -0.16 -1.46 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.39 9.91 7.30 -40.82 -0.30 9.61 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.58 7.18 -51.93 -0.37 0.21 16 33 H 0.40 4.43 8.75 -40.82 -0.36 4.07 16 34 H 0.10 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.11 1.44 8.09 -51.93 -0.42 1.02 16 36 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.15 1.88 7.63 -51.93 -0.40 1.49 16 39 H 0.14 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.86 6.87 -51.93 -0.36 0.50 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -36.86 392.43 -10.82 -47.68 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -7.99 Total: 11.89 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -1.23 Total: -15.15 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.19 Total: -54.00 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -2.01 Total: -37.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 25.28 SS G_CDS: -0.66 Total: 24.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.86 -10.82 -47.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278250735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.207 kcal (2) G-P(sol) polarization free energy of solvation -36.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds