Wall clock time and date at job start Wed Apr 1 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99912 * 2 1 4 4 H 1.48506 * 109.46884 * 239.99675 * 3 2 1 5 5 H 1.48490 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47016 * 120.00237 * 3 2 1 7 7 C 1.38811 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99990 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00499 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47427 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47062 * 64.99563 * 11 10 9 13 13 N 1.46500 * 109.46708 * 304.99316 * 11 10 9 14 14 C 1.34776 * 119.99594 * 124.58429 * 13 11 10 15 15 O 1.21289 * 120.00162 * 354.73923 * 14 13 11 16 16 C 1.50701 * 120.00357 * 174.73402 * 14 13 11 17 17 H 1.08996 * 110.01026 * 301.38566 * 16 14 13 18 18 C 1.53879 * 110.06236 * 62.78444 * 16 14 13 19 19 C 1.54175 * 108.70124 * 166.49772 * 18 16 14 20 20 S 1.83538 * 105.11045 * 332.10736 * 19 18 16 21 21 O 1.42097 * 109.49188 * 248.75937 * 20 19 18 22 22 O 1.42102 * 109.38806 * 115.41324 * 20 19 18 23 23 C 1.55038 * 110.03218 * 180.02562 * 16 14 13 24 24 C 1.52999 * 109.46721 * 184.99900 * 11 10 9 25 25 C 1.54261 * 110.03301 * 301.26184 * 24 11 10 26 26 C 1.54893 * 104.19868 * 217.10850 * 25 24 11 27 27 C 1.54889 * 102.74511 * 37.94100 * 26 25 24 28 28 C 1.53881 * 110.02776 * 184.09569 * 24 11 10 29 29 H 0.97000 * 120.00109 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99910 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46927 * 59.99159 * 10 9 7 32 32 H 1.09003 * 109.46477 * 299.99827 * 10 9 7 33 33 H 0.96994 * 120.00607 * 304.58428 * 13 11 10 34 34 H 1.09001 * 109.65006 * 286.34725 * 18 16 14 35 35 H 1.09002 * 109.64708 * 46.64604 * 18 16 14 36 36 H 1.08998 * 110.31722 * 90.99636 * 19 18 16 37 37 H 1.09003 * 110.31677 * 213.19134 * 19 18 16 38 38 H 1.09000 * 110.79590 * 316.50149 * 23 16 14 39 39 H 1.09000 * 110.79027 * 79.76582 * 23 16 14 40 40 H 1.08995 * 110.02220 * 62.71006 * 24 11 10 41 41 H 1.09002 * 110.48964 * 335.78757 * 25 24 11 42 42 H 1.08996 * 110.48608 * 98.43425 * 25 24 11 43 43 H 1.09001 * 110.75578 * 279.63153 * 26 25 24 44 44 H 1.08997 * 110.75691 * 156.25720 * 26 25 24 45 45 H 1.09004 * 110.48570 * 203.37703 * 27 26 25 46 46 H 1.09003 * 110.48585 * 80.73910 * 27 26 25 47 47 H 1.08999 * 110.03202 * 238.56870 * 28 24 11 48 48 H 1.09001 * 110.03265 * 359.95437 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.4978 -4.8134 -0.9327 13 7 0.1440 -4.6763 1.1300 14 6 -1.1869 -4.6557 0.9180 15 8 -1.6206 -4.6596 -0.2147 16 6 -2.1361 -4.6279 2.0881 17 1 -1.9718 -5.4989 2.7225 18 6 -1.9333 -3.3376 2.9018 19 6 -3.1215 -3.1720 3.8702 20 16 -4.5278 -4.0209 3.0516 21 8 -5.4919 -3.0587 2.6468 22 8 -4.9252 -5.1379 3.8350 23 6 -3.6017 -4.6085 1.5828 24 6 1.8246 -6.1412 0.1245 25 6 2.8205 -6.2908 -1.0440 26 6 2.7792 -7.8006 -1.3875 27 6 1.2817 -8.1518 -1.2046 28 6 0.8461 -7.3244 0.0224 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6848 -3.7145 0.8894 32 1 2.6846 -3.7145 -0.8906 33 1 0.4927 -4.5962 2.0316 34 1 -1.0048 -3.4040 3.4689 35 1 -1.8881 -2.4824 2.2275 36 1 -2.8990 -3.6452 4.8265 37 1 -3.3486 -2.1156 4.0134 38 1 -3.7150 -3.9136 0.7507 39 1 -3.9252 -5.6090 1.2958 40 1 2.3557 -6.1770 1.0756 41 1 2.4979 -5.6961 -1.8987 42 1 3.8227 -5.9981 -0.7309 43 1 3.3972 -8.3714 -0.6945 44 1 3.0930 -7.9712 -2.4173 45 1 1.1610 -9.2172 -1.0088 46 1 0.7106 -7.8577 -2.0852 47 1 0.9031 -7.9349 0.9237 48 1 -0.1708 -6.9572 -0.1159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278250735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:32 Heat of formation + Delta-G solvation = -140.925374 kcal Electronic energy + Delta-G solvation = -29582.081891 eV Core-core repulsion = 25569.472375 eV Total energy + Delta-G solvation = -4012.609517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.30300 -39.35291 -38.11582 -37.18119 -36.92433 -36.63533 -35.21718 -33.00218 -31.22397 -30.83307 -29.52237 -27.81781 -26.77567 -25.02474 -23.72230 -22.55362 -21.51527 -21.14134 -20.51014 -19.83999 -19.22310 -18.51901 -17.86451 -17.33339 -16.87440 -16.66992 -16.62802 -16.38742 -16.10194 -15.51180 -15.37553 -15.17873 -15.12139 -14.88651 -14.56548 -14.19202 -13.95203 -13.65590 -13.47529 -13.28053 -13.21066 -13.09510 -12.98066 -12.85984 -12.79798 -12.57943 -12.27760 -12.16373 -12.06007 -11.91858 -11.87142 -11.82934 -11.78399 -11.60634 -11.42394 -11.34477 -11.25964 -10.96697 -10.74591 -9.89883 -8.96125 -7.91580 -5.20105 -0.93521 1.47586 1.49823 1.52034 1.55979 1.65494 2.26207 2.56921 2.59253 3.05451 3.23324 3.41834 3.57206 3.60423 3.67185 3.75779 3.84328 3.89916 4.00837 4.11079 4.20014 4.26966 4.43135 4.50279 4.61990 4.63899 4.70739 4.75061 4.77967 4.85648 4.85825 4.90243 4.94577 4.97903 5.06769 5.09766 5.11998 5.21468 5.30037 5.36187 5.50550 5.51610 5.54268 5.69021 6.28838 6.63310 7.33966 7.36776 8.13105 8.36200 9.30809 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.006648 B = 0.004865 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4210.768561 B = 5753.755847 C = 9432.951989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.142 3.858 11 C 0.148 3.852 12 H 0.065 0.935 13 N -0.700 5.700 14 C 0.526 3.474 15 O -0.578 6.578 16 C -0.105 4.105 17 H 0.163 0.837 18 C -0.111 4.111 19 C -0.557 4.557 20 S 2.401 3.599 21 O -0.983 6.983 22 O -0.961 6.961 23 C -0.569 4.569 24 C -0.088 4.088 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.114 4.114 29 H 0.249 0.751 30 H 0.374 0.626 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.414 0.586 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.175 0.825 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.155 0.845 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.080 0.920 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 -17.242 8.675 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.383 5.383 10 C 0.015 3.985 11 C 0.043 3.957 12 H 0.083 0.917 13 N -0.350 5.350 14 C 0.312 3.688 15 O -0.458 6.458 16 C -0.127 4.127 17 H 0.180 0.820 18 C -0.150 4.150 19 C -0.689 4.689 20 S 2.589 3.411 21 O -0.981 6.981 22 O -0.958 6.958 23 C -0.698 4.698 24 C -0.107 4.107 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.250 0.750 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.193 0.807 37 H 0.167 0.833 38 H 0.146 0.854 39 H 0.173 0.827 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.066 0.934 47 H 0.099 0.901 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.411 -17.267 8.142 19.095 hybrid contribution 0.685 1.649 -0.505 1.855 sum 1.096 -15.618 7.637 17.420 Atomic orbital electron populations 1.69817 1.06489 1.25856 1.59418 1.25471 0.96230 1.00752 1.03872 0.85299 0.77196 0.79630 0.78121 1.20979 1.22605 1.20035 1.19560 0.91407 0.85291 1.41159 0.90659 1.42489 1.05642 1.00888 1.89316 1.21200 0.93773 0.84786 0.98750 1.21232 0.90015 0.94428 0.90030 0.91720 1.45686 1.05082 1.73071 1.11168 1.20471 0.83412 0.74733 0.90172 1.90706 1.77910 1.51281 1.25884 1.22110 0.91348 1.03077 0.96139 0.81962 1.21930 1.00242 0.96082 0.96781 1.30353 1.12375 1.15133 1.11040 1.08596 0.78376 0.75734 0.78418 1.93565 1.59597 1.62253 1.82638 1.93572 1.82117 1.52067 1.68049 1.30554 1.06435 1.14268 1.18587 1.22051 0.95918 0.92195 1.00571 1.22424 0.99092 0.97192 0.97175 1.22473 0.96123 0.95009 1.01810 1.22366 0.96454 1.00049 0.97480 1.22135 0.97998 0.95952 0.99107 0.94237 0.79400 0.94506 0.95483 0.74985 0.85747 0.91443 0.80710 0.83311 0.85404 0.82740 0.88695 0.93199 0.90474 0.89951 0.91338 0.90428 0.93365 0.90128 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.74 -35.84 5.43 -343.45 -1.87 -37.71 16 10 C 0.14 5.15 5.60 86.38 0.48 5.63 16 11 C 0.15 4.42 1.71 44.99 0.08 4.50 16 12 H 0.06 2.44 6.91 -2.39 -0.02 2.43 16 13 N -0.70 -18.26 3.97 -442.53 -1.76 -20.02 16 14 C 0.53 15.38 6.42 87.66 0.56 15.94 16 15 O -0.58 -22.69 15.12 -3.06 -0.05 -22.73 16 16 C -0.10 -2.07 2.96 -10.54 -0.03 -2.10 16 17 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 18 C -0.11 -2.14 5.64 31.29 0.18 -1.97 16 19 C -0.56 -8.14 7.29 72.38 0.53 -7.61 16 20 S 2.40 49.62 6.14 -56.49 -0.35 49.28 16 21 O -0.98 -29.93 18.15 -127.49 -2.31 -32.24 16 22 O -0.96 -23.47 18.15 -127.49 -2.31 -25.78 16 23 C -0.57 -12.33 6.19 72.68 0.45 -11.88 16 24 C -0.09 -1.87 2.71 -10.07 -0.03 -1.90 16 25 C -0.12 -2.54 5.32 31.67 0.17 -2.37 16 26 C -0.12 -1.98 6.91 31.89 0.22 -1.76 16 27 C -0.13 -2.35 6.83 31.67 0.22 -2.13 16 28 C -0.11 -2.29 6.24 31.32 0.20 -2.09 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.37 19.82 7.30 -92.70 -0.68 19.15 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.03 1.02 7.18 -2.39 -0.02 1.00 16 33 H 0.41 8.23 8.75 -92.71 -0.81 7.42 16 34 H 0.12 1.80 8.12 -2.39 -0.02 1.78 16 35 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 36 H 0.18 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.13 3.47 7.63 -2.39 -0.02 3.46 16 39 H 0.15 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.05 1.27 7.53 -2.39 -0.02 1.25 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.04 1.10 6.87 -2.39 -0.02 1.08 16 Total: -1.00 -82.79 392.43 -2.53 -85.32 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -0.52 Total: 37.77 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.33 Total: -23.40 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -3.34 Total: -115.47 kcal Atomic # 8 Polarization: -76.08 SS G_CDS: -4.67 Total: -80.75 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 49.62 SS G_CDS: -0.35 Total: 49.28 kcal Total: -82.79 -2.53 -85.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278250735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.605 kcal (2) G-P(sol) polarization free energy of solvation -82.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds