Wall clock time and date at job start Wed Apr 1 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99846 * 2 1 4 4 H 1.48501 * 109.46816 * 269.99653 * 3 2 1 5 5 H 1.48501 * 109.47565 * 29.99712 * 3 2 1 6 6 H 1.48497 * 109.46998 * 150.00121 * 3 2 1 7 7 C 1.38805 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99485 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00580 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00287 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47126 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46720 * 294.99150 * 11 10 9 13 13 N 1.46497 * 109.47270 * 54.99825 * 11 10 9 14 14 C 1.34780 * 119.99469 * 244.86593 * 13 11 10 15 15 O 1.21556 * 120.00319 * 354.97723 * 14 13 11 16 16 C 1.47809 * 119.99683 * 174.97842 * 14 13 11 17 17 C 1.41146 * 118.94823 * 0.02562 * 16 14 13 18 18 C 1.35398 * 121.76344 * 180.02562 * 17 16 14 19 19 C 1.45303 * 119.09519 * 359.97220 * 18 17 16 20 20 N 1.30879 * 138.53726 * 180.02562 * 19 18 17 21 21 O 1.21484 * 109.07388 * 179.97438 * 20 19 18 22 22 N 1.21479 * 116.30236 * 359.97438 * 21 20 19 23 23 C 1.31077 * 109.07899 * 359.97438 * 22 21 20 24 24 C 1.37768 * 118.94832 * 179.97438 * 16 14 13 25 25 C 1.53006 * 109.46911 * 174.99520 * 11 10 9 26 26 C 1.54260 * 110.03183 * 297.09757 * 25 11 10 27 27 C 1.54970 * 104.15970 * 217.13421 * 26 25 11 28 28 C 1.54893 * 102.77264 * 37.89228 * 27 26 25 29 29 C 1.53876 * 110.03016 * 179.87938 * 25 11 10 30 30 H 0.97006 * 119.99659 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99850 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47624 * 59.99380 * 10 9 7 33 33 H 1.09004 * 109.46559 * 299.99238 * 10 9 7 34 34 H 0.97001 * 120.00314 * 64.86488 * 13 11 10 35 35 H 1.08001 * 119.12301 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.45592 * 179.70456 * 18 17 16 37 37 H 1.08006 * 120.14484 * 359.97438 * 24 16 14 38 38 H 1.08996 * 110.01306 * 58.48943 * 25 11 10 39 39 H 1.09003 * 110.49084 * 335.78626 * 26 25 11 40 40 H 1.09005 * 110.48836 * 98.42847 * 26 25 11 41 41 H 1.08993 * 110.72168 * 279.57789 * 27 26 25 42 42 H 1.09003 * 110.76311 * 156.21945 * 27 26 25 43 43 H 1.09008 * 110.48350 * 203.40203 * 28 27 26 44 44 H 1.09001 * 110.59957 * 80.81702 * 28 27 26 45 45 H 1.08997 * 110.03086 * 238.57118 * 29 25 11 46 46 H 1.09000 * 110.03067 * 359.95348 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 1 0.4966 -4.8134 0.9316 13 7 0.1456 -4.6763 -1.1317 14 6 -1.1673 -4.4645 -0.9121 15 8 -1.6046 -4.4834 0.2219 16 6 -2.0752 -4.2093 -2.0502 17 6 -1.5437 -4.1928 -3.3577 18 6 -2.3231 -3.9643 -4.4410 19 6 -3.7446 -3.7303 -4.2521 20 7 -4.8033 -3.4830 -4.9808 21 8 -5.7699 -3.3749 -4.2528 22 7 -5.5658 -3.5116 -3.0631 23 6 -4.2916 -3.7523 -2.8719 24 6 -3.4132 -3.9961 -1.8010 25 6 1.8248 -6.1412 -0.1239 26 6 2.5746 -6.1941 -1.4709 27 6 2.4553 -7.6745 -1.9134 28 6 1.0193 -8.0496 -1.4702 29 6 0.8365 -7.3206 -0.1231 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6841 -3.7142 0.8921 33 1 2.6853 -3.7149 -0.8879 34 1 0.4824 -4.7337 -2.0395 35 1 -0.4870 -4.3664 -3.4978 36 1 -1.8933 -3.9517 -5.4318 37 1 -3.7863 -4.0170 -0.7876 38 1 2.5302 -6.2446 0.7005 39 1 2.0972 -5.5387 -2.1994 40 1 3.6207 -5.9185 -1.3364 41 1 3.1919 -8.2914 -1.3988 42 1 2.5618 -7.7645 -2.9945 43 1 0.9310 -9.1278 -1.3357 44 1 0.2887 -7.6958 -2.1977 45 1 1.0629 -7.9969 0.7012 46 1 -0.1852 -6.9515 -0.0330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278266883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:22 Heat of formation + Delta-G solvation = 110.419775 kcal Electronic energy + Delta-G solvation = -30596.426720 eV Core-core repulsion = 26491.565147 eV Total energy + Delta-G solvation = -4104.861573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.76381 -40.40066 -38.75242 -37.54813 -35.29220 -34.89696 -33.80199 -33.22398 -31.26961 -31.15265 -29.79981 -28.75889 -26.70993 -25.92783 -25.07951 -23.37580 -21.78701 -21.59100 -21.40099 -20.35531 -19.38337 -19.04398 -19.04191 -18.05549 -17.41627 -17.16182 -16.04578 -15.78142 -15.24612 -14.72728 -14.54635 -14.51595 -14.49064 -14.19979 -13.63052 -13.42401 -13.36588 -13.28340 -13.03762 -12.87703 -12.65185 -12.12260 -11.94591 -11.93363 -11.77683 -11.38479 -11.21061 -11.12631 -11.07435 -10.85248 -10.72658 -10.65546 -10.53029 -10.40291 -10.08663 -10.01993 -9.82379 -9.73227 -8.89848 -8.81210 -8.66056 -6.93286 -5.76216 -3.05880 -0.23789 0.80095 1.71936 2.62756 2.84275 3.13718 3.40398 3.41971 3.47089 3.49355 3.57357 3.60643 4.42799 4.49149 4.52802 4.58689 4.61107 4.68163 4.72238 4.83369 5.03532 5.19747 5.34295 5.39519 5.42733 5.54491 5.55965 5.61008 5.62496 5.64291 5.76865 5.80373 5.85759 5.89481 5.92273 6.00747 6.07926 6.12325 6.19527 6.24200 6.28932 6.40028 6.44014 6.64091 6.87159 7.65323 7.68492 8.29539 8.37187 8.41280 9.52990 10.10755 10.45467 11.45668 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.006676 B = 0.004706 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4193.164701 B = 5948.890095 C = 9125.000942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.142 3.858 11 C 0.137 3.863 12 H 0.103 0.897 13 N -0.699 5.699 14 C 0.563 3.437 15 O -0.526 6.526 16 C -0.088 4.088 17 C -0.062 4.062 18 C -0.065 4.065 19 C 0.026 3.974 20 N -0.347 5.347 21 O 0.374 5.626 22 N -0.334 5.334 23 C 0.015 3.985 24 C 0.002 3.998 25 C -0.098 4.098 26 C -0.118 4.118 27 C -0.125 4.125 28 C -0.122 4.122 29 C -0.119 4.119 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.396 0.604 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -16.832 -8.769 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.013 3.987 11 C 0.032 3.968 12 H 0.121 0.879 13 N -0.351 5.351 14 C 0.349 3.651 15 O -0.403 6.403 16 C -0.096 4.096 17 C -0.084 4.084 18 C -0.085 4.085 19 C -0.129 4.129 20 N -0.070 5.070 21 O 0.136 5.864 22 N -0.054 5.054 23 C -0.137 4.137 24 C -0.019 4.019 25 C -0.118 4.118 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.157 4.157 30 H 0.064 0.936 31 H 0.220 0.780 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.233 0.767 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.178 0.822 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.585 -16.476 -8.318 18.637 hybrid contribution 1.168 1.034 -0.127 1.565 sum -1.417 -15.442 -8.445 17.657 Atomic orbital electron populations 1.69684 1.05053 1.25568 1.57352 1.24740 0.95466 0.97619 1.02958 0.86227 0.78684 0.84038 0.77440 1.21808 1.21802 1.20771 1.19186 0.90923 0.84137 1.43059 0.91268 1.42302 1.06002 0.99653 1.89414 1.21052 0.93216 0.85875 0.98555 1.21429 0.90861 0.94019 0.90455 0.87898 1.45707 1.06747 1.72345 1.10255 1.17867 0.82413 0.76808 0.88006 1.90807 1.76039 1.50604 1.22840 1.19862 0.93430 1.02171 0.94092 1.20987 1.00500 0.96273 0.90622 1.20779 0.86180 1.01134 1.00421 1.24127 0.96930 1.02620 0.89218 1.75162 0.95305 1.18021 1.18470 1.85396 1.31597 1.59364 1.10052 1.75270 1.16345 1.16227 0.97539 1.22679 0.89702 1.04831 0.96495 1.20239 0.90093 0.93742 0.97797 1.22095 0.97010 0.94073 0.98602 1.22436 1.00496 0.96135 0.96520 1.22518 0.96834 0.96517 1.00349 1.22333 0.96862 0.99561 0.97223 1.22164 0.99947 0.96382 0.97183 0.93561 0.78000 0.95389 0.95846 0.76737 0.83599 0.82945 0.82152 0.89769 0.91684 0.91257 0.91682 0.91874 0.92212 0.91939 0.92116 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.90 22.34 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.73 -17.88 5.43 -59.91 -0.33 -18.20 16 10 C 0.14 2.61 5.84 -4.04 -0.02 2.59 16 11 C 0.14 2.04 2.04 -67.93 -0.14 1.90 16 12 H 0.10 1.81 6.91 -51.93 -0.36 1.45 16 13 N -0.70 -9.69 3.69 -54.76 -0.20 -9.89 16 14 C 0.56 9.00 6.86 -12.34 -0.08 8.92 16 15 O -0.53 -10.27 15.55 5.32 0.08 -10.19 16 16 C -0.09 -1.22 5.86 -105.05 -0.62 -1.84 16 17 C -0.06 -0.68 9.39 -39.49 -0.37 -1.05 16 18 C -0.06 -0.68 10.28 -37.79 -0.39 -1.07 16 19 C 0.03 0.33 7.94 -81.25 -0.65 -0.31 16 20 N -0.35 -4.55 12.28 32.75 0.40 -4.14 16 21 O 0.37 4.82 11.67 26.94 0.31 5.13 16 22 N -0.33 -4.69 12.29 31.88 0.39 -4.30 16 23 C 0.02 0.22 7.75 -83.07 -0.64 -0.42 16 24 C 0.00 0.04 9.60 -38.85 -0.37 -0.34 16 25 C -0.10 -1.09 2.81 -89.50 -0.25 -1.35 16 26 C -0.12 -1.14 5.13 -25.03 -0.13 -1.27 16 27 C -0.12 -1.02 6.91 -24.69 -0.17 -1.19 16 28 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 29 C -0.12 -1.24 6.19 -25.61 -0.16 -1.40 16 30 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.39 10.24 6.80 -40.82 -0.28 9.96 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 34 H 0.40 4.51 4.86 -40.82 -0.20 4.31 16 35 H 0.15 1.20 6.24 -52.49 -0.33 0.87 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.16 2.34 7.52 -52.48 -0.39 1.94 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.63 5.96 -51.93 -0.31 0.32 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.84 7.12 -51.93 -0.37 0.47 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -32.97 375.64 -8.34 -41.32 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.96 Total: 10.06 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -4.41 Total: -5.28 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.99 Total: -64.02 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: 0.40 Total: -5.05 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.97 -8.34 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278266883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.736 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds