Wall clock time and date at job start Wed Apr 1 2020 02:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00305 * 2 1 4 4 H 1.48501 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46753 * 299.99643 * 3 2 1 6 6 H 1.48499 * 109.47095 * 59.99792 * 3 2 1 7 7 C 1.38811 * 119.99283 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99710 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00598 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00437 * 174.00772 * 9 7 2 11 11 C 1.53004 * 109.53917 * 62.02435 * 10 9 7 12 12 N 1.46507 * 109.47009 * 54.54530 * 11 10 9 13 13 C 1.34779 * 120.00072 * 176.56515 * 12 11 10 14 14 O 1.21665 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.46926 * 119.99928 * 179.72515 * 13 12 11 16 16 C 1.36360 * 126.82706 * 359.96394 * 15 13 12 17 17 N 1.35578 * 109.74420 * 179.89142 * 16 15 13 18 18 H 0.97001 * 124.71570 * 180.15891 * 17 16 15 19 19 C 1.37693 * 110.56265 * 0.38790 * 17 16 15 20 20 N 1.32674 * 132.94689 * 179.75118 * 19 17 16 21 21 C 1.31606 * 121.69104 * 180.02562 * 20 19 17 22 22 C 1.38584 * 121.54200 * 0.02562 * 21 20 19 23 23 C 1.38339 * 119.32575 * 359.95262 * 22 21 20 24 24 C 1.39348 * 118.05460 * 0.04525 * 23 22 21 25 25 C 1.53174 * 109.54412 * 182.19864 * 10 9 7 26 26 C 1.53107 * 109.15483 * 63.07410 * 25 10 9 27 27 O 1.42898 * 109.48948 * 57.46824 * 26 25 10 28 28 C 1.42903 * 114.09745 * 298.89077 * 27 26 25 29 29 C 1.53087 * 109.41494 * 61.16181 * 28 27 26 30 30 H 0.97006 * 119.99581 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99932 * 354.01824 * 9 7 2 32 32 H 1.08995 * 109.47060 * 294.54778 * 11 10 9 33 33 H 1.08996 * 109.47092 * 174.54316 * 11 10 9 34 34 H 0.97001 * 119.99927 * 356.56820 * 12 11 10 35 35 H 1.07998 * 125.12740 * 359.97438 * 16 15 13 36 36 H 1.07996 * 119.23253 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.33968 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.97647 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.51839 * 182.88156 * 25 10 9 40 40 H 1.08995 * 109.52892 * 303.07260 * 25 10 9 41 41 H 1.09003 * 109.40228 * 297.48758 * 26 25 10 42 42 H 1.09004 * 109.49251 * 177.51052 * 26 25 10 43 43 H 1.09003 * 109.48199 * 301.17303 * 28 27 26 44 44 H 1.09003 * 109.48698 * 181.15022 * 28 27 26 45 45 H 1.09006 * 109.52456 * 182.48627 * 29 28 27 46 46 H 1.08992 * 109.57736 * 62.32664 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0519 -3.6534 -0.1313 11 6 3.0045 -3.8226 1.0540 12 7 2.2532 -3.6992 2.3057 13 6 2.8764 -3.8826 3.4866 14 8 4.0630 -4.1502 3.5130 15 6 2.1243 -3.7529 4.7421 16 6 0.8008 -3.4529 4.8747 17 7 0.4671 -3.4240 6.1885 18 1 -0.4211 -3.2341 6.5288 19 6 1.5657 -3.6967 6.9726 20 7 1.7419 -3.7773 8.2851 21 6 2.9160 -4.0584 8.8091 22 6 4.0290 -4.2842 8.0149 23 6 3.9050 -4.2138 6.6389 24 6 2.6518 -3.9146 6.1082 25 6 1.0551 -4.8162 -0.1576 26 6 0.1590 -4.6820 -1.3917 27 8 0.9692 -4.6546 -2.5685 28 6 1.8866 -3.5601 -2.6199 29 6 2.8535 -3.6505 -1.4366 30 1 -0.4850 0.8401 -0.0004 31 1 0.3594 -2.3903 0.0877 32 1 3.7739 -3.0516 1.0146 33 1 3.4725 -4.8058 1.0066 34 1 1.3073 -3.4855 2.2846 35 1 0.1205 -3.2677 4.0566 36 1 3.0146 -4.1137 9.8831 37 1 4.9834 -4.5130 8.4656 38 1 4.7549 -4.3846 5.9947 39 1 1.5980 -5.7603 -0.2041 40 1 0.4425 -4.7913 0.7436 41 1 -0.4148 -3.7577 -1.3239 42 1 -0.5234 -5.5306 -1.4398 43 1 1.3354 -2.6211 -2.5682 44 1 2.4489 -3.6005 -3.5528 45 1 3.5259 -2.7926 -1.4491 46 1 3.4347 -4.5697 -1.5092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278734009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:02 Heat of formation + Delta-G solvation = 2.077139 kcal Electronic energy + Delta-G solvation = -30515.717940 eV Core-core repulsion = 26406.158277 eV Total energy + Delta-G solvation = -4109.559662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71651 -39.59214 -38.58185 -37.82687 -35.79415 -33.46459 -32.95114 -32.22603 -30.66013 -30.34332 -29.50409 -29.20721 -26.71710 -24.15218 -23.83748 -23.36648 -22.85198 -22.54855 -21.57420 -19.47646 -18.71454 -18.43123 -17.28358 -16.87626 -16.35554 -16.05922 -15.62145 -15.48424 -15.36315 -15.19414 -14.83546 -14.63700 -14.30545 -14.29838 -13.76383 -13.63517 -13.34967 -12.99911 -12.96042 -12.67706 -12.48070 -12.21361 -12.09146 -12.01966 -11.74045 -11.45258 -10.96614 -10.92947 -10.80375 -10.41157 -10.35985 -10.05368 -9.84410 -9.74531 -9.71438 -9.36114 -9.24684 -8.81529 -8.64176 -8.53200 -8.11096 -7.14861 -5.92213 -3.22403 0.84191 1.23257 2.03835 2.57331 3.34755 3.43381 3.43770 3.59376 3.68443 3.94751 4.36763 4.37407 4.47832 4.57782 4.72311 4.89303 5.09398 5.14495 5.22265 5.26501 5.34460 5.38406 5.48923 5.53830 5.58505 5.63231 5.76730 5.77167 5.99160 6.06976 6.09633 6.16183 6.20804 6.27196 6.30367 6.36598 6.40410 6.53607 6.55593 6.71917 6.76747 6.77519 6.99387 7.07285 7.62252 7.70796 7.86265 8.05642 8.25208 8.71090 9.38372 9.88020 10.24920 11.29452 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.003395 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.892310 B = 8244.729567 C = 9416.888059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.005 4.005 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.189 3.811 11 C 0.120 3.880 12 N -0.698 5.698 13 C 0.584 3.416 14 O -0.557 6.557 15 C -0.210 4.210 16 C 0.121 3.879 17 N -0.566 5.566 18 H 0.424 0.576 19 C 0.275 3.725 20 N -0.498 5.498 21 C 0.132 3.868 22 C -0.201 4.201 23 C -0.017 4.017 24 C -0.107 4.107 25 C -0.151 4.151 26 C 0.066 3.934 27 O -0.393 6.393 28 C 0.070 3.930 29 C -0.152 4.152 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.399 0.601 35 H 0.190 0.810 36 H 0.160 0.840 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -10.358 9.556 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.097 3.903 11 C -0.006 4.006 12 N -0.348 5.348 13 C 0.372 3.628 14 O -0.437 6.437 15 C -0.222 4.222 16 C -0.011 4.011 17 N -0.171 5.171 18 H 0.262 0.738 19 C 0.043 3.957 20 N -0.211 5.211 21 C -0.034 4.034 22 C -0.222 4.222 23 C -0.044 4.044 24 C -0.114 4.114 25 C -0.189 4.189 26 C -0.011 4.011 27 O -0.312 6.312 28 C -0.007 4.007 29 C -0.193 4.193 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.235 0.765 35 H 0.207 0.793 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.601 -10.349 9.910 14.341 hybrid contribution 0.000 1.469 -0.083 1.472 sum 0.601 -8.880 9.827 13.258 Atomic orbital electron populations 1.69651 1.04993 1.25631 1.57527 1.24673 0.95398 0.97486 1.02590 0.86224 0.79081 0.84403 0.77139 1.20521 1.21887 1.22001 1.19117 0.91072 0.83593 1.42725 0.91088 1.42491 1.06154 0.99562 1.87325 1.19841 0.91326 0.87289 0.91848 1.21801 0.95108 1.00229 0.83462 1.45562 1.13684 1.70401 1.05110 1.17106 0.86362 0.76999 0.82383 1.90723 1.15220 1.50177 1.87538 1.20113 0.93324 1.16048 0.92665 1.22291 0.96267 0.97323 0.85205 1.41297 1.10545 1.60535 1.04742 0.73824 1.18356 0.86876 1.01364 0.89101 1.66463 1.26922 1.17392 1.10365 1.22411 0.86396 0.94645 0.99900 1.21940 1.00526 1.05816 0.93964 1.21163 0.96162 0.92300 0.94751 1.19450 0.94267 1.05236 0.92495 1.22351 0.98952 0.98745 0.98826 1.22460 0.92471 1.01586 0.84605 1.87797 1.52851 1.49599 1.40976 1.22453 0.90856 0.90205 0.97149 1.22450 0.98919 1.01612 0.96291 0.93566 0.78145 0.91630 0.92645 0.76526 0.79346 0.82266 0.84438 0.83782 0.91193 0.91338 0.92240 0.90124 0.91238 0.90403 0.90415 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.04 13.07 55.49 0.73 -24.31 16 2 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -5.61 8.67 -15.06 -0.13 -5.74 16 8 H 0.07 1.74 6.78 -52.49 -0.36 1.39 16 9 N -0.71 -14.50 3.60 -47.06 -0.17 -14.67 16 10 C 0.19 3.18 0.41 -131.64 -0.05 3.13 16 11 C 0.12 2.08 4.36 -4.04 -0.02 2.06 16 12 N -0.70 -11.40 5.12 -61.54 -0.32 -11.72 16 13 C 0.58 10.23 7.80 -12.74 -0.10 10.13 16 14 O -0.56 -11.36 16.25 5.22 0.08 -11.28 16 15 C -0.21 -3.20 6.27 -103.36 -0.65 -3.85 16 16 C 0.12 1.43 11.34 -16.57 -0.19 1.24 16 17 N -0.57 -6.30 5.97 -11.97 -0.07 -6.37 16 18 H 0.42 3.38 8.96 -40.82 -0.37 3.01 16 19 C 0.28 3.81 8.41 -155.53 -1.31 2.50 16 20 N -0.50 -6.60 10.39 -12.29 -0.13 -6.72 16 21 C 0.13 1.42 11.14 -17.52 -0.20 1.23 16 22 C -0.20 -2.17 10.11 -39.42 -0.40 -2.56 16 23 C -0.02 -0.24 9.97 -39.13 -0.39 -0.63 16 24 C -0.11 -1.63 6.28 -104.93 -0.66 -2.29 16 25 C -0.15 -2.17 4.80 -26.59 -0.13 -2.30 16 26 C 0.07 0.99 6.67 37.21 0.25 1.24 16 27 O -0.39 -6.66 10.77 -35.23 -0.38 -7.04 16 28 C 0.07 1.18 6.68 37.20 0.25 1.43 16 29 C -0.15 -2.55 4.79 -26.59 -0.13 -2.68 16 30 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.38 8.31 6.82 -40.82 -0.28 8.03 16 32 H 0.07 1.30 7.46 -51.93 -0.39 0.91 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 6.02 6.31 -40.82 -0.26 5.76 16 35 H 0.19 1.69 7.38 -52.49 -0.39 1.30 16 36 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.14 2.02 7.55 -52.49 -0.40 1.62 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.90 7.40 -51.93 -0.38 0.51 16 41 H 0.06 1.00 7.15 -51.93 -0.37 0.63 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.08 1.40 7.20 -51.93 -0.37 1.02 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -31.56 375.15 -9.62 -41.18 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -6.06 Total: 16.36 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -3.94 Total: 2.70 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: 0.04 Total: -63.79 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.29 Total: -18.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.56 -9.62 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278734009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.260 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds