Wall clock time and date at job start Wed Apr 1 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00305 * 2 1 4 4 H 1.48501 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46753 * 299.99643 * 3 2 1 6 6 H 1.48499 * 109.47095 * 59.99792 * 3 2 1 7 7 C 1.38811 * 119.99283 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99710 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00598 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00437 * 174.00772 * 9 7 2 11 11 C 1.53004 * 109.53917 * 62.02435 * 10 9 7 12 12 N 1.46507 * 109.47009 * 54.54530 * 11 10 9 13 13 C 1.34779 * 120.00072 * 176.56515 * 12 11 10 14 14 O 1.21665 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.46926 * 119.99928 * 179.72515 * 13 12 11 16 16 C 1.36360 * 126.82706 * 359.96394 * 15 13 12 17 17 N 1.35578 * 109.74420 * 179.89142 * 16 15 13 18 18 H 0.97001 * 124.71570 * 180.15891 * 17 16 15 19 19 C 1.37693 * 110.56265 * 0.38790 * 17 16 15 20 20 N 1.32674 * 132.94689 * 179.75118 * 19 17 16 21 21 C 1.31606 * 121.69104 * 180.02562 * 20 19 17 22 22 C 1.38584 * 121.54200 * 0.02562 * 21 20 19 23 23 C 1.38339 * 119.32575 * 359.95262 * 22 21 20 24 24 C 1.39348 * 118.05460 * 0.04525 * 23 22 21 25 25 C 1.53174 * 109.54412 * 182.19864 * 10 9 7 26 26 C 1.53107 * 109.15483 * 63.07410 * 25 10 9 27 27 O 1.42898 * 109.48948 * 57.46824 * 26 25 10 28 28 C 1.42903 * 114.09745 * 298.89077 * 27 26 25 29 29 C 1.53087 * 109.41494 * 61.16181 * 28 27 26 30 30 H 0.97006 * 119.99581 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99932 * 354.01824 * 9 7 2 32 32 H 1.08995 * 109.47060 * 294.54778 * 11 10 9 33 33 H 1.08996 * 109.47092 * 174.54316 * 11 10 9 34 34 H 0.97001 * 119.99927 * 356.56820 * 12 11 10 35 35 H 1.07998 * 125.12740 * 359.97438 * 16 15 13 36 36 H 1.07996 * 119.23253 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.33968 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.97647 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.51839 * 182.88156 * 25 10 9 40 40 H 1.08995 * 109.52892 * 303.07260 * 25 10 9 41 41 H 1.09003 * 109.40228 * 297.48758 * 26 25 10 42 42 H 1.09004 * 109.49251 * 177.51052 * 26 25 10 43 43 H 1.09003 * 109.48199 * 301.17303 * 28 27 26 44 44 H 1.09003 * 109.48698 * 181.15022 * 28 27 26 45 45 H 1.09006 * 109.52456 * 182.48627 * 29 28 27 46 46 H 1.08992 * 109.57736 * 62.32664 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0519 -3.6534 -0.1313 11 6 3.0045 -3.8226 1.0540 12 7 2.2532 -3.6992 2.3057 13 6 2.8764 -3.8826 3.4866 14 8 4.0630 -4.1502 3.5130 15 6 2.1243 -3.7529 4.7421 16 6 0.8008 -3.4529 4.8747 17 7 0.4671 -3.4240 6.1885 18 1 -0.4211 -3.2341 6.5288 19 6 1.5657 -3.6967 6.9726 20 7 1.7419 -3.7773 8.2851 21 6 2.9160 -4.0584 8.8091 22 6 4.0290 -4.2842 8.0149 23 6 3.9050 -4.2138 6.6389 24 6 2.6518 -3.9146 6.1082 25 6 1.0551 -4.8162 -0.1576 26 6 0.1590 -4.6820 -1.3917 27 8 0.9692 -4.6546 -2.5685 28 6 1.8866 -3.5601 -2.6199 29 6 2.8535 -3.6505 -1.4366 30 1 -0.4850 0.8401 -0.0004 31 1 0.3594 -2.3903 0.0877 32 1 3.7739 -3.0516 1.0146 33 1 3.4725 -4.8058 1.0066 34 1 1.3073 -3.4855 2.2846 35 1 0.1205 -3.2677 4.0566 36 1 3.0146 -4.1137 9.8831 37 1 4.9834 -4.5130 8.4656 38 1 4.7549 -4.3846 5.9947 39 1 1.5980 -5.7603 -0.2041 40 1 0.4425 -4.7913 0.7436 41 1 -0.4148 -3.7577 -1.3239 42 1 -0.5234 -5.5306 -1.4398 43 1 1.3354 -2.6211 -2.5682 44 1 2.4489 -3.6005 -3.5528 45 1 3.5259 -2.7926 -1.4491 46 1 3.4347 -4.5697 -1.5092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278734009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:01 Heat of formation + Delta-G solvation = -19.618329 kcal Electronic energy + Delta-G solvation = -30516.658726 eV Core-core repulsion = 26406.158277 eV Total energy + Delta-G solvation = -4110.500449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.69296 -40.96130 -39.88524 -38.80903 -37.24495 -35.07309 -33.99736 -33.77289 -31.95240 -31.34935 -30.93046 -30.49075 -28.04238 -25.93499 -24.79830 -24.63638 -24.16574 -23.48541 -22.88092 -20.76942 -20.04657 -19.53497 -19.06199 -17.86502 -17.55039 -17.14516 -17.02407 -16.77585 -16.54120 -16.39509 -16.08150 -15.95591 -15.69837 -15.61985 -15.29612 -15.15673 -14.47503 -14.21749 -14.14845 -13.86677 -13.68182 -13.60459 -13.31612 -13.15379 -12.98880 -12.90219 -12.86039 -12.65881 -12.19196 -12.06673 -11.74102 -11.43698 -11.39846 -11.11002 -11.10938 -10.94565 -10.43004 -10.29018 -9.93405 -9.55983 -9.15430 -8.95328 -7.90262 -5.15454 -0.13761 0.29043 0.95694 1.43565 1.49298 1.53666 1.67439 2.32816 2.47863 2.57687 2.91150 3.10730 3.43356 3.49955 3.63846 3.72666 3.78946 3.91064 4.01290 4.03480 4.16366 4.18284 4.26743 4.35728 4.44984 4.51359 4.55480 4.65621 4.80597 4.83969 4.86320 4.86774 4.92552 5.07142 5.13099 5.20710 5.24999 5.31369 5.33385 5.37709 5.38295 5.61181 5.66914 5.82611 6.23370 6.32408 6.40021 6.74686 6.94744 7.38607 7.42712 8.10212 8.38669 9.31639 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.003395 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.892310 B = 8244.729567 C = 9416.888059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.055 4.055 3 Si 0.942 3.058 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.301 1.301 7 C -0.210 4.210 8 H 0.063 0.937 9 N -0.711 5.711 10 C 0.189 3.811 11 C 0.128 3.872 12 N -0.692 5.692 13 C 0.583 3.417 14 O -0.596 6.596 15 C -0.254 4.254 16 C 0.152 3.848 17 N -0.551 5.551 18 H 0.439 0.561 19 C 0.258 3.742 20 N -0.510 5.510 21 C 0.131 3.869 22 C -0.185 4.185 23 C -0.046 4.046 24 C -0.135 4.135 25 C -0.143 4.143 26 C 0.064 3.936 27 O -0.398 6.398 28 C 0.076 3.924 29 C -0.151 4.151 30 H 0.247 0.753 31 H 0.379 0.621 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.406 0.594 35 H 0.220 0.780 36 H 0.201 0.799 37 H 0.172 0.828 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.111 0.889 43 H 0.036 0.964 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 -11.836 10.896 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.248 4.248 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.229 1.229 7 C -0.342 4.342 8 H 0.081 0.919 9 N -0.352 5.352 10 C 0.098 3.902 11 C 0.002 3.998 12 N -0.342 5.342 13 C 0.372 3.628 14 O -0.479 6.479 15 C -0.265 4.265 16 C 0.018 3.982 17 N -0.157 5.157 18 H 0.281 0.719 19 C 0.026 3.974 20 N -0.224 5.224 21 C -0.034 4.034 22 C -0.206 4.206 23 C -0.073 4.073 24 C -0.142 4.142 25 C -0.181 4.181 26 C -0.013 4.013 27 O -0.318 6.318 28 C -0.001 4.001 29 C -0.191 4.191 30 H 0.056 0.944 31 H 0.213 0.787 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.243 0.757 35 H 0.236 0.764 36 H 0.217 0.783 37 H 0.189 0.811 38 H 0.147 0.853 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.129 0.871 43 H 0.055 0.945 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.018 -11.849 11.263 16.348 hybrid contribution 0.245 1.839 -0.417 1.902 sum 0.262 -10.010 10.846 14.761 Atomic orbital electron populations 1.69732 1.05622 1.25290 1.59926 1.25084 0.95921 0.99319 1.04460 0.85542 0.78328 0.82421 0.76263 1.20376 1.22553 1.22939 1.19200 0.90775 0.84751 1.39490 0.91888 1.42481 1.05894 0.99878 1.86937 1.19997 0.91775 0.86781 0.91644 1.21645 0.94568 0.99637 0.83982 1.45471 1.13836 1.70227 1.04617 1.17464 0.86054 0.76054 0.83226 1.90686 1.16948 1.52130 1.88110 1.19974 0.94828 1.19904 0.91805 1.22656 0.95384 0.94125 0.86068 1.41304 1.10858 1.59268 1.04255 0.71899 1.18543 0.87265 1.02187 0.89413 1.66581 1.28112 1.17798 1.09876 1.23158 0.85533 0.92922 1.01760 1.22317 1.02117 1.03501 0.92624 1.21276 0.95647 0.94148 0.96193 1.19748 0.95358 1.06170 0.92891 1.22313 0.98445 0.97906 0.99395 1.22597 0.92551 1.01916 0.84206 1.87798 1.52915 1.49078 1.41972 1.22352 0.90640 0.88928 0.98150 1.22425 0.98735 1.01923 0.96026 0.94366 0.78661 0.94734 0.91689 0.75693 0.76389 0.78255 0.81090 0.85251 0.89534 0.89651 0.94280 0.87060 0.94546 0.88502 0.92152 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.91 13.07 21.65 0.28 -51.63 16 2 C -0.05 -2.83 5.50 84.86 0.47 -2.37 16 3 Si 0.94 44.29 29.55 68.60 2.03 46.32 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.21 -10.12 8.67 84.03 0.73 -9.39 16 8 H 0.06 3.14 6.78 -2.91 -0.02 3.12 16 9 N -0.71 -28.74 3.60 -302.81 -1.09 -29.83 16 10 C 0.19 6.18 0.41 3.72 0.00 6.18 16 11 C 0.13 4.39 4.36 86.38 0.38 4.76 16 12 N -0.69 -22.34 5.12 -466.83 -2.39 -24.73 16 13 C 0.58 20.70 7.80 86.52 0.67 21.37 16 14 O -0.60 -25.21 16.25 -4.24 -0.07 -25.28 16 15 C -0.25 -7.70 6.27 -19.05 -0.12 -7.82 16 16 C 0.15 3.35 11.34 83.68 0.95 4.30 16 17 N -0.55 -11.29 5.97 -191.79 -1.15 -12.44 16 18 H 0.44 6.00 8.96 -92.71 -0.83 5.17 16 19 C 0.26 6.83 8.41 133.76 1.13 7.96 16 20 N -0.51 -12.53 10.39 -192.80 -2.00 -14.54 16 21 C 0.13 2.49 11.14 84.81 0.95 3.44 16 22 C -0.18 -3.65 10.11 22.38 0.23 -3.42 16 23 C -0.05 -1.27 9.97 22.56 0.23 -1.05 16 24 C -0.13 -4.09 6.28 -20.06 -0.13 -4.21 16 25 C -0.14 -3.77 4.80 30.69 0.15 -3.62 16 26 C 0.06 1.78 6.67 72.02 0.48 2.26 16 27 O -0.40 -12.72 10.77 -148.98 -1.60 -14.33 16 28 C 0.08 2.51 6.68 72.01 0.48 2.99 16 29 C -0.15 -4.91 4.79 30.68 0.15 -4.77 16 30 H 0.25 13.43 8.31 -92.70 -0.77 12.65 16 31 H 0.38 16.29 6.82 -92.71 -0.63 15.66 16 32 H 0.03 1.40 7.46 -2.39 -0.02 1.38 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.41 11.78 6.31 -92.71 -0.59 11.20 16 35 H 0.22 3.33 7.38 -2.91 -0.02 3.31 16 36 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.13 3.85 7.55 -2.91 -0.02 3.82 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.08 1.99 7.40 -2.39 -0.02 1.98 16 41 H 0.04 1.26 7.15 -2.39 -0.02 1.25 16 42 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 44 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.06 2.17 7.20 -2.38 -0.02 2.15 16 46 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.28 375.15 -0.26 -70.54 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -0.99 Total: 39.30 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 6.73 Total: 16.61 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -6.35 Total: -133.17 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.67 Total: -39.60 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -70.28 -0.26 -70.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278734009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.917 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds