Wall clock time and date at job start Wed Apr 1 2020 02:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99729 * 2 1 4 4 H 1.48497 * 109.47252 * 269.99881 * 3 2 1 5 5 H 1.48498 * 109.47367 * 30.00178 * 3 2 1 6 6 H 1.48499 * 109.46990 * 150.00104 * 3 2 1 7 7 C 1.38800 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00482 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99958 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46995 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99600 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99482 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99563 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47263 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.82972 * 59.43501 * 15 14 13 17 17 C 1.54462 * 109.83552 * 180.42501 * 15 14 13 18 18 C 1.55485 * 102.37371 * 140.87456 * 17 15 14 19 19 C 1.54011 * 100.78409 * 326.89038 * 18 17 15 20 20 C 1.52935 * 115.14191 * 165.46263 * 19 18 17 21 21 N 1.48157 * 85.86896 * 93.40592 * 20 19 18 22 22 C 1.46906 * 110.99859 * 136.93574 * 21 20 19 23 23 C 1.53004 * 109.46895 * 90.44119 * 22 21 20 24 24 C 1.53000 * 109.46758 * 180.02562 * 23 22 21 25 25 O 1.42899 * 109.46841 * 179.97438 * 24 23 22 26 26 C 1.48149 * 90.93494 * 23.97226 * 21 20 19 27 27 O 1.42555 * 106.47893 * 35.15077 * 19 18 17 28 28 H 0.96988 * 120.00196 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47151 * 59.99944 * 10 9 7 30 30 H 1.08998 * 109.46613 * 299.99690 * 10 9 7 31 31 H 0.96993 * 120.00529 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47413 * 60.00079 * 14 13 11 33 33 H 1.09002 * 109.47315 * 300.00120 * 14 13 11 34 34 H 1.09003 * 110.82602 * 259.09781 * 17 15 14 35 35 H 1.09000 * 110.82430 * 22.45555 * 17 15 14 36 36 H 1.09001 * 111.15278 * 209.00736 * 18 17 15 37 37 H 1.09000 * 111.15222 * 84.77231 * 18 17 15 38 38 H 1.09001 * 113.80914 * 207.64439 * 20 19 18 39 39 H 1.08997 * 113.80573 * 339.17270 * 20 19 18 40 40 H 1.08996 * 109.46752 * 210.44399 * 22 21 20 41 41 H 1.09007 * 109.46642 * 330.44554 * 22 21 20 42 42 H 1.09002 * 109.47021 * 300.00031 * 23 22 21 43 43 H 1.08995 * 109.47238 * 60.00269 * 23 22 21 44 44 H 1.08999 * 109.47305 * 300.00346 * 24 23 22 45 45 H 1.09003 * 109.46770 * 59.99950 * 24 23 22 46 46 H 0.96702 * 114.00009 * 179.97438 * 25 24 23 47 47 H 1.08999 * 113.80873 * 221.79611 * 26 21 20 48 48 H 1.08992 * 113.91893 * 90.27770 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1295 -2.7280 -0.0019 10 6 2.5161 -3.8914 -0.0013 11 6 1.9877 -5.3027 -0.0018 12 8 0.7913 -5.5023 -0.0028 13 7 2.8445 -6.3430 -0.0020 14 6 2.3308 -7.7150 -0.0029 15 6 3.5028 -8.6984 -0.0023 16 1 4.1205 -8.5370 0.8811 17 6 2.9705 -10.1483 -0.0141 18 6 3.9669 -10.8614 -0.9713 19 6 4.2911 -9.7195 -1.9526 20 6 5.5132 -9.9541 -2.8415 21 7 4.5540 -10.4899 -3.8354 22 6 4.8683 -10.0039 -5.1856 23 6 5.8254 -10.9821 -5.8698 24 6 6.1533 -10.4755 -7.2758 25 8 7.0476 -11.3888 -7.9146 26 6 3.4524 -9.7047 -3.2316 27 8 4.2915 -8.5167 -1.1875 28 1 -0.4850 0.8399 0.0004 29 1 3.1240 -3.7317 0.8891 30 1 3.1253 -3.7308 -0.8908 31 1 3.8012 -6.1834 -0.0015 32 1 1.7225 -7.8747 -0.8933 33 1 1.7218 -7.8756 0.8867 34 1 3.0122 -10.5846 0.9839 35 1 1.9552 -10.1851 -0.4092 36 1 3.4905 -11.6972 -1.4837 37 1 4.8600 -11.1870 -0.4378 38 1 6.0091 -9.0367 -3.1588 39 1 6.2048 -10.7004 -2.4508 40 1 3.9497 -9.9275 -5.7672 41 1 5.3385 -9.0227 -5.1182 42 1 6.7440 -11.0584 -5.2881 43 1 5.3554 -11.9632 -5.9371 44 1 5.2348 -10.3987 -7.8577 45 1 6.6235 -9.4945 -7.2080 46 1 7.2988 -11.1306 -8.8120 47 1 2.5144 -10.2538 -3.1491 48 1 3.3281 -8.7122 -3.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280917155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:40 Heat of formation + Delta-G solvation = -102.896749 kcal Electronic energy + Delta-G solvation = -27267.553493 eV Core-core repulsion = 23256.593021 eV Total energy + Delta-G solvation = -4010.960472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36430 -39.22376 -38.28178 -37.35235 -34.50302 -33.36543 -32.53617 -32.41664 -30.42100 -28.85589 -27.02520 -26.70196 -25.47441 -24.21898 -22.95217 -21.92812 -21.32351 -20.24802 -19.61303 -17.88592 -17.85130 -17.18551 -16.74303 -16.43033 -16.29665 -15.98685 -15.47704 -15.21429 -14.80936 -14.79465 -14.41097 -14.17178 -13.97744 -13.87923 -13.34400 -13.30425 -13.07464 -12.89934 -12.74617 -12.58067 -12.34973 -12.13346 -12.08520 -11.71108 -11.66929 -11.48390 -11.27725 -11.06664 -11.05059 -11.01187 -10.84407 -10.74764 -10.43109 -9.84574 -9.77974 -9.37010 -9.36307 -9.05954 -8.83720 -8.21831 -6.48377 -6.20563 -3.90824 2.99276 3.13579 3.16187 3.22919 3.28671 3.32659 3.42866 3.77546 3.84062 3.97330 4.18104 4.21663 4.30808 4.43765 4.44235 4.62068 4.73267 4.75800 4.84414 4.91048 5.00079 5.00359 5.11887 5.12088 5.14492 5.21685 5.23805 5.24311 5.35925 5.39385 5.44437 5.51303 5.57979 5.60469 5.64887 5.76177 5.79300 5.88215 5.90976 5.93971 6.17586 6.52091 6.59481 6.77454 7.14667 7.60820 7.77443 8.36530 8.65870 9.24714 10.86884 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.001942 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.944159 B =14411.499195 C =16193.835078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.521 6.521 13 N -0.732 5.732 14 C 0.115 3.885 15 C 0.069 3.931 16 H 0.089 0.911 17 C -0.148 4.148 18 C -0.121 4.121 19 C 0.079 3.921 20 C 0.013 3.987 21 N -0.473 5.473 22 C 0.025 3.975 23 C -0.111 4.111 24 C 0.075 3.925 25 O -0.575 6.575 26 C -0.007 4.007 27 O -0.355 6.355 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.401 0.599 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.380 0.620 47 H 0.095 0.905 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.460 -25.708 -7.970 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.396 6.396 13 N -0.387 5.387 14 C -0.010 4.010 15 C 0.011 3.989 16 H 0.107 0.893 17 C -0.186 4.186 18 C -0.159 4.159 19 C 0.039 3.961 20 C -0.116 4.116 21 N -0.197 5.197 22 C -0.104 4.104 23 C -0.149 4.149 24 C -0.003 4.003 25 O -0.381 6.381 26 C -0.136 4.136 27 O -0.273 6.273 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.235 0.765 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.227 0.773 47 H 0.113 0.887 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.249 -26.752 -7.542 29.985 hybrid contribution 2.444 2.495 -0.574 3.539 sum 13.693 -24.257 -8.116 29.013 Atomic orbital electron populations 1.70017 1.05939 1.27419 1.46937 1.24995 0.95035 0.99023 0.94577 0.86166 0.79412 0.81571 0.78331 1.20292 1.20758 1.19701 1.22875 0.94922 0.91675 1.58842 0.90934 1.85376 1.05046 0.96316 1.96714 1.23522 1.06477 0.95408 1.04911 1.20304 0.86493 0.86321 0.75140 1.90695 1.15396 1.85659 1.47853 1.45868 1.10129 1.05104 1.77576 1.21665 0.95301 0.81321 1.02717 1.23107 0.92274 0.94671 0.88884 0.89305 1.23153 1.00378 0.93700 1.01360 1.22836 0.99833 0.97392 0.95826 1.23444 0.96110 0.85463 0.91129 1.24202 0.95476 0.99736 0.92171 1.68432 1.04393 1.46022 1.00830 1.22548 0.99670 0.96719 0.91483 1.21356 0.99739 1.00080 0.93708 1.22149 0.92397 0.91878 0.93904 1.86467 1.67192 1.51221 1.33218 1.24401 0.96864 0.98248 0.94090 1.88378 1.70387 1.34272 1.34309 0.92209 0.89258 0.89263 0.76491 0.91344 0.90605 0.89396 0.89767 0.88922 0.89863 0.90121 0.88550 0.90494 0.93274 0.91238 0.90432 0.93532 0.93671 0.77274 0.88695 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 11 C 0.53 10.19 7.85 -10.98 -0.09 10.10 16 12 O -0.52 -12.05 15.86 5.55 0.09 -11.96 16 13 N -0.73 -10.27 5.47 -60.29 -0.33 -10.60 16 14 C 0.11 1.34 5.23 -4.04 -0.02 1.32 16 15 C 0.07 0.59 3.61 -25.97 -0.09 0.50 16 16 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 17 C -0.15 -0.96 6.56 -24.64 -0.16 -1.12 16 18 C -0.12 -0.77 6.39 -24.88 -0.16 -0.93 16 19 C 0.08 0.64 1.47 -90.27 -0.13 0.51 16 20 C 0.01 0.10 7.52 -3.17 -0.02 0.07 16 21 N -0.47 -3.74 6.14 -243.54 -1.50 -5.23 16 22 C 0.02 0.18 4.80 -3.82 -0.02 0.16 16 23 C -0.11 -0.80 5.89 -26.73 -0.16 -0.96 16 24 C 0.08 0.47 7.05 37.16 0.26 0.74 16 25 O -0.58 -4.20 13.66 -35.23 -0.48 -4.68 16 26 C -0.01 -0.06 7.45 -3.16 -0.02 -0.08 16 27 O -0.36 -3.55 10.65 -35.23 -0.38 -3.93 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.40 4.75 8.40 -40.82 -0.34 4.41 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 36 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.64 7.48 -51.93 -0.39 0.26 16 39 H 0.10 0.65 8.11 -51.93 -0.42 0.22 16 40 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.05 0.35 7.38 -51.93 -0.38 -0.03 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.38 1.05 9.12 45.56 0.42 1.46 16 47 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 48 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 LS Contribution 407.59 15.07 6.14 6.14 Total: -1.00 -36.27 407.59 -10.54 -46.82 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.39 Total: 2.14 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -0.20 Total: -5.73 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -1.09 Total: -41.43 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.77 Total: -20.57 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.27 -10.54 -46.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280917155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.080 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds