Wall clock time and date at job start Wed Apr 1 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00152 * 2 1 4 4 H 1.48495 * 109.47320 * 270.00705 * 3 2 1 5 5 H 1.48503 * 109.46689 * 30.00376 * 3 2 1 6 6 H 1.48498 * 109.47273 * 150.00319 * 3 2 1 7 7 C 1.38813 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00052 * 190.97757 * 7 2 1 9 9 N 1.36934 * 120.00107 * 10.98109 * 7 2 1 10 10 C 1.46920 * 120.63177 * 31.67133 * 9 7 2 11 11 C 1.53194 * 108.78186 * 126.36843 * 10 9 7 12 12 C 1.53047 * 109.30838 * 54.63192 * 11 10 9 13 13 C 1.53005 * 109.46007 * 178.63056 * 12 11 10 14 14 O 1.42891 * 109.47234 * 180.75403 * 13 12 11 15 15 N 1.46505 * 109.45901 * 58.66182 * 12 11 10 16 16 C 1.34774 * 120.00169 * 62.66805 * 15 12 11 17 17 O 1.21592 * 119.99746 * 354.86993 * 16 15 12 18 18 C 1.47522 * 120.00069 * 174.85976 * 16 15 12 19 19 C 1.39436 * 120.24691 * 0.02562 * 18 16 15 20 20 C 1.38292 * 120.28147 * 179.72031 * 19 18 16 21 21 C 1.37879 * 120.72838 * 359.97438 * 20 19 18 22 22 C 1.39680 * 120.10527 * 359.97438 * 21 20 19 23 23 N 1.35853 * 133.51557 * 179.97438 * 22 21 20 24 24 C 1.30087 * 109.54041 * 180.02562 * 23 22 21 25 25 N 1.36125 * 110.04821 * 0.02562 * 24 23 22 26 26 H 0.96994 * 126.30826 * 180.02562 * 25 24 23 27 27 C 1.37509 * 107.37998 * 0.02562 * 25 24 23 28 28 C 1.53039 * 109.53775 * 298.63918 * 12 11 10 29 29 C 1.46928 * 120.63168 * 211.64364 * 9 7 2 30 30 H 0.96998 * 120.00115 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.58825 * 6.58082 * 10 9 7 32 32 H 1.09007 * 109.58807 * 246.15723 * 10 9 7 33 33 H 1.08994 * 109.49771 * 294.68858 * 11 10 9 34 34 H 1.08997 * 109.50519 * 174.58121 * 11 10 9 35 35 H 1.09002 * 109.46715 * 300.75853 * 13 12 11 36 36 H 1.08998 * 109.46877 * 60.75188 * 13 12 11 37 37 H 0.96699 * 114.00067 * 179.97438 * 14 13 12 38 38 H 0.97005 * 119.99479 * 242.67663 * 15 12 11 39 39 H 1.08002 * 119.86559 * 359.74636 * 19 18 16 40 40 H 1.08000 * 119.63584 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.94666 * 180.02562 * 21 20 19 42 42 H 1.07998 * 124.97844 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.49509 * 181.31415 * 28 12 11 44 44 H 1.09004 * 109.49928 * 301.41239 * 28 12 11 45 45 H 1.09004 * 109.58618 * 353.42412 * 29 9 7 46 46 H 1.09000 * 109.58447 * 113.84026 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0754 -1.2109 0.1776 9 7 1.3443 -2.3771 -0.2270 10 6 0.1666 -2.4129 -1.1045 11 6 0.3835 -3.4845 -2.1777 12 6 0.7049 -4.8196 -1.5020 13 6 0.8886 -5.9000 -2.5697 14 8 1.1713 -7.1504 -1.9383 15 7 -0.3976 -5.1945 -0.6130 16 6 -1.6245 -5.4250 -1.1211 17 8 -1.8395 -5.2318 -2.3021 18 6 -2.7064 -5.9120 -0.2444 19 6 -2.4656 -6.1350 1.1108 20 6 -3.4808 -6.5861 1.9345 21 6 -4.7432 -6.8215 1.4325 22 6 -5.0105 -6.6048 0.0787 23 7 -6.1227 -6.7432 -0.6890 24 6 -5.8493 -6.4072 -1.9156 25 7 -4.5448 -6.0318 -2.0169 26 1 -4.0930 -5.7369 -2.8229 27 6 -3.9857 -6.1478 -0.7660 28 6 1.9932 -4.6839 -0.6873 29 6 1.7944 -3.6260 0.4026 30 1 -0.4850 0.8400 0.0004 31 1 0.0355 -1.4409 -1.5801 32 1 -0.7190 -2.6574 -0.5179 33 1 1.2142 -3.1928 -2.8202 34 1 -0.5213 -3.5883 -2.7764 35 1 -0.0247 -5.9883 -3.1581 36 1 1.7171 -5.6275 -3.2234 37 1 1.2994 -7.8829 -2.5564 38 1 -0.2446 -5.2767 0.3414 39 1 -1.4822 -5.9544 1.5191 40 1 -3.2826 -6.7557 2.9825 41 1 -5.5268 -7.1732 2.0872 42 1 -6.5541 -6.4237 -2.7338 43 1 2.2340 -5.6414 -0.2253 44 1 2.8088 -4.3809 -1.3440 45 1 2.7375 -3.4544 0.9217 46 1 1.0417 -3.9694 1.1123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281820333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:54 Heat of formation + Delta-G solvation = 15.045772 kcal Electronic energy + Delta-G solvation = -31340.361914 eV Core-core repulsion = 27231.364614 eV Total energy + Delta-G solvation = -4108.997300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.20954 -40.20619 -37.80370 -36.91573 -36.15140 -34.10230 -33.14370 -32.08996 -30.84426 -29.92980 -29.66628 -29.22869 -26.75790 -24.28966 -23.87962 -22.56276 -22.31886 -22.07682 -21.08610 -20.33883 -18.78668 -18.16304 -17.45332 -17.21936 -16.76531 -16.53017 -15.47120 -15.34037 -15.22416 -14.97479 -14.66562 -14.33550 -14.13117 -13.96452 -13.73276 -13.54295 -13.37845 -13.16523 -12.70766 -12.51678 -12.13582 -12.04593 -11.87576 -11.79061 -11.44861 -11.27798 -10.90932 -10.78002 -10.74707 -10.43193 -10.32041 -10.30348 -10.07470 -9.97535 -9.77777 -9.59889 -9.14950 -8.68917 -8.50266 -8.49651 -8.21630 -6.63762 -5.80002 -3.28968 0.55166 1.43095 2.49036 2.95138 3.22980 3.35538 3.39368 3.42418 3.43498 3.91088 4.14063 4.39518 4.46669 4.59049 4.83671 4.85522 5.14879 5.22636 5.23982 5.28551 5.37799 5.42094 5.50064 5.60717 5.63462 5.71095 5.86468 5.88128 6.05293 6.17582 6.21866 6.27796 6.31696 6.33829 6.47550 6.60315 6.65277 6.67601 6.73542 6.87068 6.98582 7.30190 7.36289 7.68369 7.71651 7.73071 7.77242 7.84198 8.45173 8.45747 9.20264 9.81465 10.39768 11.27670 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.003562 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.606592 B = 7859.390811 C = 8742.323193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.181 3.819 11 C -0.152 4.152 12 C 0.194 3.806 13 C 0.062 3.938 14 O -0.568 6.568 15 N -0.690 5.690 16 C 0.568 3.432 17 O -0.558 6.558 18 C -0.122 4.122 19 C -0.059 4.059 20 C -0.137 4.137 21 C -0.040 4.040 22 C 0.031 3.969 23 N -0.497 5.497 24 C 0.257 3.743 25 N -0.584 5.584 26 H 0.434 0.566 27 C 0.102 3.898 28 C -0.134 4.134 29 C 0.145 3.855 30 H 0.254 0.746 31 H 0.086 0.914 32 H 0.018 0.982 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.370 0.630 38 H 0.400 0.600 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 -16.135 -2.613 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.056 3.944 11 C -0.192 4.192 12 C 0.109 3.891 13 C -0.016 4.016 14 O -0.372 6.372 15 N -0.339 5.339 16 C 0.356 3.644 17 O -0.439 6.439 18 C -0.128 4.128 19 C -0.080 4.080 20 C -0.158 4.158 21 C -0.060 4.060 22 C -0.087 4.087 23 N -0.217 5.217 24 C -0.031 4.031 25 N -0.195 5.195 26 H 0.276 0.724 27 C -0.012 4.012 28 C -0.174 4.174 29 C 0.018 3.982 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.216 0.784 38 H 0.236 0.764 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.233 0.767 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.819 -15.750 -2.538 17.349 hybrid contribution 1.468 1.013 -0.876 1.987 sum -5.352 -14.737 -3.414 16.046 Atomic orbital electron populations 1.69982 1.05268 1.25496 1.53903 1.25171 0.95359 0.98399 1.00331 0.86275 0.79051 0.83629 0.77675 1.21445 1.21698 1.20398 1.19170 0.90890 0.83970 1.44528 0.91821 1.44026 1.32665 1.03359 1.51303 1.20659 0.88184 0.96482 0.89109 1.22613 1.01742 0.94444 1.00417 1.20336 0.86415 0.92893 0.89477 1.22751 0.99759 0.83868 0.95243 1.86473 1.94320 1.18748 1.37688 1.45781 1.08467 1.68441 1.11249 1.17960 0.82292 0.76957 0.87154 1.90586 1.82543 1.54032 1.16774 1.18977 0.91364 1.07982 0.94518 1.21193 0.99712 0.95809 0.91257 1.20831 0.92291 1.02347 1.00281 1.20426 0.96928 0.97036 0.91606 1.19049 0.89447 1.05450 0.94739 1.70489 1.26777 1.22929 1.01536 1.25409 0.84362 0.96541 0.96753 1.43276 1.10894 1.55017 1.10322 0.72395 1.18592 0.94390 1.02180 0.86073 1.22258 0.95413 0.99985 0.99719 1.20906 0.97758 0.87201 0.92354 0.93599 0.89584 0.96399 0.92046 0.90931 0.91822 0.93453 0.78446 0.76404 0.84804 0.84581 0.84968 0.76696 0.91609 0.90922 0.92417 0.96877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 11.09 55.49 0.62 -25.46 16 2 C 0.01 0.18 5.04 -17.43 -0.09 0.09 16 3 Si 0.90 21.52 29.57 -169.99 -5.03 16.50 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.87 9.58 -15.06 -0.14 -7.02 16 8 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 9 N -0.59 -14.31 2.98 -172.32 -0.51 -14.83 16 10 C 0.18 4.32 4.99 -3.71 -0.02 4.30 16 11 C -0.15 -2.99 4.71 -26.61 -0.13 -3.11 16 12 C 0.19 3.26 0.44 -131.77 -0.06 3.20 16 13 C 0.06 0.92 5.68 37.16 0.21 1.13 16 14 O -0.57 -7.56 12.84 -35.23 -0.45 -8.01 16 15 N -0.69 -11.09 3.92 -48.59 -0.19 -11.28 16 16 C 0.57 9.41 7.17 -12.48 -0.09 9.32 16 17 O -0.56 -9.92 11.53 5.28 0.06 -9.86 16 18 C -0.12 -1.83 5.88 -104.95 -0.62 -2.45 16 19 C -0.06 -0.75 9.53 -39.12 -0.37 -1.12 16 20 C -0.14 -1.50 9.99 -39.69 -0.40 -1.89 16 21 C -0.04 -0.48 10.09 -39.17 -0.40 -0.88 16 22 C 0.03 0.44 7.22 -84.71 -0.61 -0.17 16 23 N -0.50 -6.78 11.28 -12.05 -0.14 -6.92 16 24 C 0.26 2.74 12.97 -89.72 -1.16 1.58 16 25 N -0.58 -7.26 6.00 -11.56 -0.07 -7.33 16 26 H 0.43 5.04 7.72 -40.82 -0.32 4.73 16 27 C 0.10 1.50 6.88 -83.77 -0.58 0.92 16 28 C -0.13 -2.25 4.85 -26.62 -0.13 -2.37 16 29 C 0.14 2.86 6.24 -3.71 -0.02 2.83 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.09 2.35 6.14 -51.93 -0.32 2.03 16 32 H 0.02 0.46 7.74 -51.92 -0.40 0.06 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.46 6.23 -51.93 -0.32 1.13 16 35 H 0.06 1.00 6.17 -51.93 -0.32 0.68 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.37 3.30 9.12 45.56 0.42 3.72 16 38 H 0.40 5.98 5.23 -40.82 -0.21 5.77 16 39 H 0.13 1.45 6.40 -52.49 -0.34 1.11 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.22 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.07 1.00 7.66 -51.93 -0.40 0.61 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 46 H 0.01 0.26 6.89 -51.93 -0.36 -0.10 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -33.96 363.78 -9.89 -43.85 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.06 Total: 13.48 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -4.60 Total: 4.37 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -0.29 Total: -65.82 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.39 Total: -17.87 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.96 -9.89 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281820333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.900 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds