Wall clock time and date at job start Wed Apr 1 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00164 * 2 1 4 4 H 1.48507 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47495 * 299.99896 * 3 2 1 6 6 H 1.48498 * 109.47048 * 59.99967 * 3 2 1 7 7 C 1.37878 * 119.99417 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47360 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.47110 * 180.02562 * 11 10 9 13 13 O 1.42106 * 110.54383 * 68.37859 * 12 11 10 14 14 O 1.42103 * 110.54570 * 291.62598 * 12 11 10 15 15 N 1.65600 * 104.44956 * 179.97438 * 12 11 10 16 16 C 1.46503 * 119.99817 * 65.00238 * 15 12 11 17 17 C 1.53041 * 109.46038 * 144.99992 * 16 15 12 18 18 C 1.53198 * 109.30956 * 181.38550 * 17 16 15 19 19 N 1.46923 * 108.77633 * 305.36231 * 18 17 16 20 20 C 1.34778 * 120.63348 * 233.59108 * 19 18 17 21 21 O 1.21279 * 119.99711 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.99999 * 180.02562 * 20 19 18 23 23 C 1.53001 * 117.51956 * 111.28092 * 22 20 19 24 24 C 1.52999 * 60.00190 * 107.47765 * 23 22 20 25 25 C 1.46934 * 118.73731 * 53.86534 * 19 18 17 26 26 C 1.53048 * 109.45917 * 265.06991 * 16 15 12 27 27 H 0.96996 * 119.99681 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46928 * 60.00083 * 9 7 2 29 29 H 1.08994 * 109.47624 * 300.00328 * 9 7 2 30 30 H 1.09006 * 109.46903 * 60.00261 * 10 9 7 31 31 H 1.09003 * 109.46954 * 300.00230 * 10 9 7 32 32 H 1.09000 * 109.46811 * 59.99794 * 11 10 9 33 33 H 1.08999 * 109.46988 * 300.00434 * 11 10 9 34 34 H 0.97000 * 120.00230 * 245.00275 * 15 12 11 35 35 H 1.08999 * 109.45004 * 25.03333 * 16 15 12 36 36 H 1.08996 * 109.49353 * 61.43663 * 17 16 15 37 37 H 1.08998 * 109.49676 * 301.33771 * 17 16 15 38 38 H 1.08998 * 109.58092 * 185.57932 * 18 17 16 39 39 H 1.08991 * 109.58549 * 65.15320 * 18 17 16 40 40 H 1.09002 * 115.55088 * 325.57701 * 22 20 19 41 41 H 1.09001 * 117.49733 * 214.97195 * 23 22 20 42 42 H 1.08995 * 117.49577 * 359.97438 * 23 22 20 43 43 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 44 44 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 45 45 H 1.08999 * 109.58534 * 65.92320 * 25 19 18 46 46 H 1.09003 * 109.58700 * 186.35183 * 25 19 18 47 47 H 1.09000 * 109.49355 * 298.56114 * 26 16 15 48 48 H 1.08997 * 109.49809 * 58.66166 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 -0.0001 12 16 2.6588 -6.3659 0.0007 13 8 3.3547 -6.4264 1.2382 14 8 3.3566 -6.4263 -1.2358 15 7 1.7085 -7.7221 0.0006 16 6 0.8495 -8.0145 -1.1496 17 6 0.7818 -9.5283 -1.3636 18 6 -0.0891 -9.8285 -2.5877 19 7 -1.3977 -9.1856 -2.4062 20 6 -2.5350 -9.9008 -2.5140 21 8 -2.4843 -11.0865 -2.7635 22 6 -3.8696 -9.2267 -2.3256 23 6 -4.7684 -9.0820 -3.5553 24 6 -5.1238 -10.0924 -2.4627 25 6 -1.4432 -7.7470 -2.1109 26 6 -0.5570 -7.4713 -0.8867 27 1 -0.4849 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5568 0.8902 30 1 2.8718 -3.6044 0.8906 31 1 2.8718 -3.6044 -0.8895 32 1 0.8537 -5.0446 -0.8903 33 1 0.8531 -5.0451 0.8896 34 1 1.7205 -8.3228 0.7621 35 1 1.2614 -7.5399 -2.0402 36 1 0.3470 -10.0011 -0.4830 37 1 1.7865 -9.9179 -1.5276 38 1 -0.2218 -10.9058 -2.6864 39 1 0.3908 -9.4338 -3.4832 40 1 -3.8907 -8.4232 -1.5894 41 1 -5.3807 -8.1832 -3.6282 42 1 -4.3942 -9.4740 -4.5010 43 1 -4.9835 -11.1493 -2.6895 44 1 -5.9700 -9.8582 -1.8167 45 1 -1.0714 -7.1861 -2.9684 46 1 -2.4696 -7.4506 -1.8949 47 1 -0.9792 -7.9636 -0.0106 48 1 -0.5051 -6.3968 -0.7112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318382886.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:03 Heat of formation + Delta-G solvation = -124.221375 kcal Electronic energy + Delta-G solvation = -28414.814922 eV Core-core repulsion = 24402.929745 eV Total energy + Delta-G solvation = -4011.885177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41073 -39.23267 -38.14383 -37.06684 -37.02169 -36.44434 -35.88074 -34.15202 -32.30195 -31.59579 -29.62415 -26.65477 -25.64072 -24.86579 -23.81536 -23.28884 -22.34326 -21.79599 -20.39840 -19.85770 -18.76985 -18.66976 -18.40315 -17.45233 -17.14046 -17.01276 -16.48986 -16.43272 -16.27002 -15.63869 -15.54795 -15.20614 -15.03403 -14.91600 -14.49025 -14.16958 -14.02030 -13.55556 -13.52292 -13.42267 -13.25793 -13.20450 -13.13515 -12.95378 -12.76327 -12.65651 -12.59407 -12.44661 -12.33887 -12.23813 -12.05519 -11.71776 -11.57589 -11.50285 -11.40737 -11.32135 -11.08942 -10.85241 -10.55254 -10.35856 -9.73454 -8.21087 -6.30751 -0.72691 1.40111 1.41899 1.44037 1.53980 1.77180 1.93607 2.41083 2.77419 2.92424 3.12940 3.23753 3.43362 3.65300 3.73996 3.77324 3.88039 3.92271 3.97360 4.02923 4.04438 4.13380 4.27995 4.32001 4.42042 4.45367 4.64191 4.69583 4.75179 4.76970 4.85402 4.87401 4.93010 4.97159 5.02408 5.05788 5.10092 5.15005 5.23649 5.34437 5.49108 5.51988 5.67907 5.82760 6.10538 6.23104 6.34295 6.85009 7.11938 7.38345 8.90236 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.002591 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.598384 B =10805.222686 C =12843.816341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.107 4.107 11 C -0.608 4.608 12 S 2.626 3.374 13 O -0.995 6.995 14 O -0.990 6.990 15 N -1.103 6.103 16 C 0.140 3.860 17 C -0.127 4.127 18 C 0.109 3.891 19 N -0.606 5.606 20 C 0.539 3.461 21 O -0.589 6.589 22 C -0.204 4.204 23 C -0.142 4.142 24 C -0.153 4.153 25 C 0.102 3.898 26 C -0.164 4.164 27 H 0.264 0.736 28 H 0.008 0.992 29 H 0.004 0.996 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.426 0.574 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.150 0.850 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.124 0.876 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 -20.035 -4.328 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.589 4.589 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.146 4.146 11 C -0.739 4.739 12 S 2.721 3.279 13 O -0.986 6.986 14 O -0.980 6.980 15 N -0.863 5.863 16 C 0.033 3.967 17 C -0.167 4.167 18 C -0.014 4.014 19 N -0.337 5.337 20 C 0.329 3.671 21 O -0.470 6.470 22 C -0.225 4.225 23 C -0.179 4.179 24 C -0.191 4.191 25 C -0.020 4.020 26 C -0.204 4.204 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.262 0.738 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.167 0.833 41 H 0.147 0.853 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.142 0.858 45 H 0.106 0.894 46 H 0.131 0.869 47 H 0.105 0.895 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.590 -20.438 -4.604 22.282 hybrid contribution -0.132 0.933 0.458 1.048 sum -7.722 -19.504 -4.146 21.383 Atomic orbital electron populations 1.70056 1.07417 1.27724 1.51494 1.25856 0.95791 1.02938 0.94728 0.85504 0.79081 0.79262 0.77866 1.19030 1.20237 1.20375 1.21772 0.93656 0.92678 1.50773 0.92468 1.18950 0.93956 0.91492 0.96160 1.21312 0.98715 0.92649 1.01925 1.30612 1.16525 1.13337 1.13455 1.04323 0.75281 0.75471 0.72789 1.93538 1.72086 1.86510 1.46437 1.93538 1.71263 1.86320 1.46858 1.55382 1.61390 1.41044 1.28436 1.21006 0.90152 0.97461 0.88046 1.22104 1.01270 0.94386 0.98935 1.21640 0.82175 0.99396 0.98172 1.48163 1.05586 1.10413 1.69561 1.20192 0.85946 0.85899 0.75053 1.90658 1.87812 1.17374 1.51120 1.22342 0.88878 1.05369 1.05899 1.23018 1.00372 1.02468 0.92036 1.23003 0.96482 0.97153 1.02435 1.22118 1.02848 0.79125 0.97939 1.22759 0.94692 1.03355 0.99561 0.92678 0.97371 0.97731 0.91926 0.91618 0.83069 0.83207 0.73780 0.88656 0.90410 0.89076 0.89831 0.89920 0.83269 0.85293 0.89381 0.89601 0.85803 0.89438 0.86866 0.89462 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.54 13.29 21.45 0.28 -53.26 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.11 -4.03 5.16 30.60 0.16 -3.87 16 11 C -0.61 -15.78 5.19 71.98 0.37 -15.40 16 12 S 2.63 67.13 5.44 -56.49 -0.31 66.83 16 13 O -1.00 -32.36 18.08 -127.65 -2.31 -34.66 16 14 O -0.99 -31.42 17.39 -127.65 -2.22 -33.64 16 15 N -1.10 -18.35 5.36 -169.26 -0.91 -19.25 16 16 C 0.14 2.01 2.65 45.02 0.12 2.13 16 17 C -0.13 -1.67 5.61 30.67 0.17 -1.50 16 18 C 0.11 1.64 6.43 86.37 0.56 2.20 16 19 N -0.61 -9.23 2.97 -818.05 -2.43 -11.65 16 20 C 0.54 10.42 7.48 87.66 0.66 11.08 16 21 O -0.59 -16.18 15.67 -3.03 -0.05 -16.23 16 22 C -0.20 -2.67 5.12 -11.54 -0.06 -2.73 16 23 C -0.14 -1.56 10.24 30.59 0.31 -1.25 16 24 C -0.15 -1.95 10.04 30.60 0.31 -1.65 16 25 C 0.10 1.10 6.37 86.51 0.55 1.65 16 26 C -0.16 -1.89 5.67 30.82 0.17 -1.71 16 27 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.15 3.17 6.80 -2.39 -0.02 3.16 16 33 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.43 5.60 8.80 -96.74 -0.85 4.75 16 35 H 0.10 1.45 7.48 -2.39 -0.02 1.44 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.52 7.01 -2.39 -0.02 1.51 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.15 1.24 6.58 -2.39 -0.02 1.22 16 41 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 1.47 7.67 -2.39 -0.02 1.45 16 44 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.11 0.83 5.52 -2.39 -0.01 0.82 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 1.04 5.75 -2.39 -0.01 1.02 16 Total: -1.00 -79.01 396.04 -1.63 -80.64 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.11 Total: 14.68 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 4.17 Total: -38.56 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.05 Total: -84.16 kcal Atomic # 8 Polarization: -79.96 SS G_CDS: -4.58 Total: -84.53 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 67.13 SS G_CDS: -0.31 Total: 66.83 kcal Total: -79.01 -1.63 -80.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318382886.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.582 kcal (2) G-P(sol) polarization free energy of solvation -79.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds