Wall clock time and date at job start Wed Apr 1 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99890 * 2 1 4 4 H 1.48505 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46990 * 299.99805 * 3 2 1 6 6 H 1.48499 * 109.46934 * 59.99863 * 3 2 1 7 7 C 1.38810 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00114 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00421 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00404 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47464 * 185.00823 * 10 9 7 12 12 N 1.46499 * 110.01763 * 53.52149 * 11 10 9 13 13 C 1.34782 * 120.00126 * 65.01997 * 12 11 10 14 14 O 1.21280 * 119.99525 * 354.95516 * 13 12 11 15 15 C 1.50697 * 119.99945 * 174.94658 * 13 12 11 16 16 C 1.52998 * 109.46967 * 180.02562 * 15 13 12 17 17 H 1.09004 * 110.01375 * 53.62464 * 16 15 13 18 18 C 1.53875 * 110.02961 * 175.00298 * 16 15 13 19 19 C 1.54165 * 108.70649 * 166.47367 * 18 16 15 20 20 S 1.82924 * 105.08405 * 332.09138 * 19 18 16 21 21 O 1.42104 * 109.35163 * 115.52245 * 20 19 18 22 22 O 1.42098 * 109.35133 * 248.59045 * 20 19 18 23 23 C 1.55051 * 110.03036 * 292.19780 * 16 15 13 24 24 C 1.54271 * 110.03297 * 292.08082 * 11 10 9 25 25 C 1.54883 * 104.19766 * 217.10251 * 24 11 10 26 26 C 1.54897 * 102.74838 * 37.94177 * 25 24 11 27 27 C 1.53870 * 110.03688 * 174.91376 * 11 10 9 28 28 H 0.97002 * 119.99780 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99453 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46868 * 65.00634 * 10 9 7 31 31 H 1.09001 * 109.47107 * 305.00874 * 10 9 7 32 32 H 0.97009 * 120.00038 * 245.02590 * 12 11 10 33 33 H 1.08994 * 109.47453 * 300.00276 * 15 13 12 34 34 H 1.09001 * 109.47159 * 60.00701 * 15 13 12 35 35 H 1.08999 * 109.64513 * 286.32590 * 18 16 15 36 36 H 1.08998 * 109.64586 * 46.75559 * 18 16 15 37 37 H 1.08997 * 110.31820 * 90.98951 * 19 18 16 38 38 H 1.09002 * 110.32212 * 213.08778 * 19 18 16 39 39 H 1.09002 * 110.78600 * 316.54094 * 23 16 15 40 40 H 1.09001 * 110.79185 * 80.00155 * 23 16 15 41 41 H 1.08999 * 110.48473 * 335.78430 * 24 11 10 42 42 H 1.09002 * 110.48675 * 98.42370 * 24 11 10 43 43 H 1.09001 * 110.75461 * 279.62973 * 25 24 11 44 44 H 1.08997 * 110.75941 * 156.25891 * 25 24 11 45 45 H 1.08995 * 110.48327 * 203.38126 * 26 25 24 46 46 H 1.08997 * 110.59473 * 80.78862 * 26 25 24 47 47 H 1.09000 * 110.03279 * 238.56893 * 27 11 10 48 48 H 1.09006 * 110.03209 * 359.95083 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0687 -4.8170 -0.1254 12 7 0.2070 -4.6167 -1.2931 13 6 0.7374 -4.6280 -2.5320 14 8 1.9387 -4.7123 -2.6765 15 6 -0.1620 -4.5362 -3.7377 16 6 0.6862 -4.5706 -5.0105 17 1 1.3366 -5.4453 -5.0019 18 6 -0.2248 -4.6035 -6.2502 19 6 0.6268 -4.2955 -7.4979 20 16 2.0016 -3.2530 -6.8904 21 8 3.2301 -3.9460 -7.0636 22 8 1.8544 -1.9351 -7.4009 23 6 1.5351 -3.2776 -5.1181 24 6 0.2119 -4.9220 1.1532 25 6 0.0305 -6.4455 1.3649 26 6 1.4099 -7.0149 0.9500 27 6 1.8304 -6.1477 -0.2545 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.6158 -3.7543 0.9320 31 1 2.7504 -3.6766 -0.8412 32 1 -0.7455 -4.4757 -1.1745 33 1 -0.8540 -5.3783 -3.7397 34 1 -0.7249 -3.6035 -3.7009 35 1 -0.6746 -5.5915 -6.3483 36 1 -1.0083 -3.8525 -6.1492 37 1 1.0138 -5.2186 -7.9292 38 1 0.0354 -3.7527 -8.2353 39 1 0.9393 -2.4013 -4.8627 40 1 2.4206 -3.3424 -4.4858 41 1 0.7351 -4.4787 2.0005 42 1 -0.7544 -4.4396 1.0056 43 1 -0.7576 -6.8339 0.7197 44 1 -0.1805 -6.6678 2.4109 45 1 1.3179 -8.0599 0.6542 46 1 2.1278 -6.9114 1.7637 47 1 1.5582 -6.6448 -1.1856 48 1 2.9050 -5.9669 -0.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318643060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:50 Heat of formation + Delta-G solvation = -107.700810 kcal Electronic energy + Delta-G solvation = -29744.163600 eV Core-core repulsion = 25732.994809 eV Total energy + Delta-G solvation = -4011.168791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.20522 -38.17169 -37.00895 -36.50567 -35.94373 -34.31569 -33.16584 -31.38273 -30.80504 -28.74996 -28.57318 -27.49309 -24.79388 -24.36023 -22.21956 -21.38930 -20.70923 -20.04595 -18.93090 -18.83457 -17.24470 -17.08589 -16.56468 -16.46669 -15.97784 -15.71759 -15.12254 -14.89229 -14.56540 -14.46309 -14.30516 -13.97383 -13.80639 -13.24840 -13.14902 -12.97969 -12.64337 -12.51399 -12.27615 -12.15691 -12.06683 -11.96461 -11.89113 -11.74390 -11.37445 -11.17620 -11.03427 -10.98405 -10.92955 -10.83530 -10.72240 -10.69064 -10.45588 -10.41975 -10.26368 -10.00169 -9.68908 -9.35129 -8.80364 -8.54292 -6.85976 -5.75668 -3.01458 0.03163 2.52166 3.01772 3.41017 3.45073 3.51965 3.53387 3.59328 3.93609 4.21179 4.41655 4.45975 4.58600 4.66762 4.71018 4.76893 4.81199 4.99518 5.04999 5.25550 5.31601 5.42860 5.44431 5.49320 5.51435 5.55623 5.60382 5.62544 5.65796 5.75492 5.87577 5.93453 5.94153 6.00208 6.03990 6.16744 6.27678 6.39274 6.45623 6.50446 6.61394 6.91524 7.12774 7.74253 7.90199 8.44441 8.63455 9.56262 10.14165 10.50152 11.47604 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007848 B = 0.004465 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3566.757414 B = 6268.932109 C = 8909.932569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.015 4.015 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.145 3.855 11 C 0.169 3.831 12 N -0.709 5.709 13 C 0.519 3.481 14 O -0.532 6.532 15 C -0.129 4.129 16 C -0.071 4.071 17 H 0.102 0.898 18 C -0.111 4.111 19 C -0.596 4.596 20 S 2.381 3.619 21 O -0.940 6.940 22 O -0.943 6.943 23 C -0.573 4.573 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.116 4.116 28 H 0.252 0.748 29 H 0.381 0.619 30 H 0.018 0.982 31 H 0.044 0.956 32 H 0.396 0.604 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 -16.548 -8.139 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.211 4.211 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.360 4.360 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.017 3.983 11 C 0.083 3.917 12 N -0.360 5.360 13 C 0.305 3.695 14 O -0.409 6.409 15 C -0.170 4.170 16 C -0.091 4.091 17 H 0.120 0.880 18 C -0.149 4.149 19 C -0.725 4.725 20 S 2.566 3.434 21 O -0.937 6.937 22 O -0.941 6.941 23 C -0.704 4.704 24 C -0.157 4.157 25 C -0.162 4.162 26 C -0.163 4.163 27 C -0.154 4.154 28 H 0.062 0.938 29 H 0.215 0.785 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.230 0.770 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.172 0.828 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.102 -16.060 -8.758 18.747 hybrid contribution -1.048 0.828 0.471 1.416 sum -5.151 -15.232 -8.287 18.089 Atomic orbital electron populations 1.69651 1.05001 1.25296 1.58722 1.24655 0.95502 0.97446 1.03471 0.86170 0.78939 0.84344 0.77141 1.20607 1.21913 1.21985 1.19281 0.91046 0.84206 1.41470 0.91375 1.42192 1.05578 0.99737 1.89380 1.21160 0.93455 0.85149 0.98568 1.21216 0.90910 0.95187 0.84351 1.46007 1.11237 1.73392 1.05399 1.20257 0.89086 0.75903 0.84256 1.90656 1.15113 1.48997 1.86152 1.21607 0.98405 1.04970 0.92041 1.21572 0.96228 0.97122 0.94144 0.87975 1.21993 0.98308 1.04947 0.89675 1.30500 1.18338 1.16174 1.07502 1.09262 0.77534 0.76345 0.80308 1.93611 1.39954 1.75053 1.85069 1.93607 1.87039 1.35350 1.78061 1.30729 1.11954 1.05348 1.22321 1.22606 1.00139 0.95722 0.97242 1.22519 0.97133 0.95740 1.00782 1.22388 0.97021 0.98688 0.98167 1.22397 1.00736 0.94314 0.97998 0.93783 0.78549 0.96421 0.93845 0.77005 0.88609 0.88042 0.89013 0.89463 0.84800 0.84623 0.84256 0.82760 0.89761 0.91031 0.91853 0.91716 0.92127 0.91624 0.91544 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.23 -6.40 9.99 -15.06 -0.15 -6.55 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -17.74 5.27 -59.91 -0.32 -18.05 16 10 C 0.14 2.97 4.63 -4.05 -0.02 2.95 16 11 C 0.17 2.60 0.57 -130.70 -0.07 2.53 16 12 N -0.71 -9.92 4.56 -46.57 -0.21 -10.13 16 13 C 0.52 7.50 6.66 -10.98 -0.07 7.42 16 14 O -0.53 -9.43 11.73 5.56 0.07 -9.37 16 15 C -0.13 -1.28 5.18 -27.89 -0.14 -1.43 16 16 C -0.07 -0.68 2.21 -89.08 -0.20 -0.87 16 17 H 0.10 0.99 7.93 -51.93 -0.41 0.58 16 18 C -0.11 -0.72 5.75 -25.67 -0.15 -0.87 16 19 C -0.60 -4.19 7.26 37.77 0.27 -3.92 16 20 S 2.38 27.64 6.10 -107.50 -0.66 26.98 16 21 O -0.94 -14.33 18.15 -57.73 -1.05 -15.37 16 22 O -0.94 -14.50 18.15 -57.73 -1.05 -15.54 16 23 C -0.57 -6.94 6.11 38.24 0.23 -6.71 16 24 C -0.12 -1.63 5.69 -25.07 -0.14 -1.77 16 25 C -0.12 -1.34 6.91 -24.74 -0.17 -1.51 16 26 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 27 C -0.12 -1.59 5.22 -25.62 -0.13 -1.72 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.38 9.49 7.20 -40.82 -0.29 9.19 16 30 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 31 H 0.04 0.99 6.60 -51.93 -0.34 0.65 16 32 H 0.40 4.70 8.23 -40.82 -0.34 4.37 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 37 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.14 1.66 8.06 -51.93 -0.42 1.25 16 40 H 0.15 2.27 6.92 -51.93 -0.36 1.91 16 41 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 42 H 0.07 0.97 7.70 -51.93 -0.40 0.57 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.92 7.00 -51.93 -0.36 0.56 16 48 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -37.90 386.93 -10.60 -48.50 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.91 Total: 10.85 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.01 Total: -14.56 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.20 Total: -55.07 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -2.03 Total: -40.28 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 27.64 SS G_CDS: -0.66 Total: 26.98 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.90 -10.60 -48.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318643060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.196 kcal (2) G-P(sol) polarization free energy of solvation -37.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds