Wall clock time and date at job start Wed Apr 1 2020 03:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00328 * 2 1 4 4 H 1.48493 * 109.47323 * 270.00830 * 3 2 1 5 5 H 1.48506 * 109.46605 * 30.00486 * 3 2 1 6 6 H 1.48499 * 109.47271 * 150.00141 * 3 2 1 7 7 C 1.38814 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99749 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00350 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00183 * 174.23242 * 9 7 2 11 11 C 1.52995 * 110.01420 * 301.50476 * 10 9 7 12 12 N 1.46500 * 109.47807 * 303.90084 * 11 10 9 13 13 C 1.34775 * 120.00252 * 175.12873 * 12 11 10 14 14 O 1.21275 * 119.99990 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99906 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47113 * 179.97438 * 15 13 12 17 17 H 1.09003 * 110.69995 * 308.32030 * 16 15 13 18 18 C 1.55048 * 110.78654 * 185.00101 * 16 15 13 19 19 C 1.53877 * 106.61839 * 199.29730 * 18 16 15 20 20 C 1.54169 * 108.70832 * 47.17870 * 19 18 16 21 21 S 1.82919 * 105.08373 * 332.09142 * 20 19 18 22 22 O 1.42092 * 109.35137 * 248.72265 * 21 20 19 23 23 O 1.42102 * 109.35170 * 115.51881 * 21 20 19 24 24 C 1.54265 * 110.03202 * 62.89927 * 10 9 7 25 25 C 1.54967 * 104.16107 * 95.75458 * 24 10 9 26 26 C 1.54887 * 102.77639 * 37.88775 * 25 24 10 27 27 C 1.53878 * 110.03340 * 180.11613 * 10 9 7 28 28 H 0.96999 * 119.99901 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00307 * 354.23170 * 9 7 2 30 30 H 1.09005 * 109.47215 * 183.89588 * 11 10 9 31 31 H 1.09000 * 109.47293 * 63.90580 * 11 10 9 32 32 H 0.97004 * 119.99548 * 355.12888 * 12 11 10 33 33 H 1.09000 * 109.46797 * 300.00211 * 15 13 12 34 34 H 1.09005 * 109.47068 * 59.99308 * 15 13 12 35 35 H 1.08997 * 110.02564 * 318.58155 * 18 16 15 36 36 H 1.09000 * 110.02974 * 80.00805 * 18 16 15 37 37 H 1.08998 * 109.64917 * 167.03202 * 19 18 16 38 38 H 1.09004 * 109.65069 * 287.32552 * 19 18 16 39 39 H 1.09005 * 110.31702 * 90.99101 * 20 19 18 40 40 H 1.08995 * 110.32077 * 213.08866 * 20 19 18 41 41 H 1.09000 * 110.48341 * 214.40071 * 24 10 9 42 42 H 1.08996 * 110.48572 * 337.04642 * 24 10 9 43 43 H 1.08998 * 110.71781 * 279.57376 * 25 24 10 44 44 H 1.09002 * 110.76438 * 156.22060 * 25 24 10 45 45 H 1.08998 * 110.49080 * 203.40442 * 26 25 24 46 46 H 1.09003 * 110.60089 * 80.81335 * 26 25 24 47 47 H 1.09003 * 110.02997 * 359.95027 * 27 10 9 48 48 H 1.08995 * 110.03160 * 121.33067 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4646 0.1259 11 6 3.7239 -3.1666 1.4286 12 7 3.9654 -2.2667 2.5592 13 6 3.6034 -2.6361 3.8038 14 8 3.0774 -3.7132 3.9878 15 6 3.8514 -1.7101 4.9666 16 6 3.3504 -2.3647 6.2556 17 1 2.3214 -2.7051 6.1401 18 6 3.4758 -1.3881 7.4534 19 6 3.4300 -2.2478 8.7288 20 6 4.3886 -3.4426 8.5544 21 16 4.4465 -3.7473 6.7517 22 8 3.8068 -4.9826 6.4622 23 8 5.7619 -3.5000 6.2743 24 6 3.8041 -3.3777 -1.0787 25 6 4.9718 -3.1140 -2.0628 26 6 6.1888 -2.9610 -1.1170 27 6 5.6277 -2.1993 0.1015 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3664 -0.0855 30 1 4.3237 -4.0689 1.5479 31 1 2.6677 -3.4342 1.3964 32 1 4.3858 -1.4050 2.4119 33 1 4.9198 -1.5111 5.0512 34 1 3.3190 -0.7728 4.8047 35 1 4.4225 -0.8507 7.3993 36 1 2.6448 -0.6828 7.4486 37 1 3.7417 -1.6499 9.5852 38 1 2.4153 -2.6125 8.8888 39 1 5.3810 -3.1892 8.9275 40 1 4.0012 -4.3180 9.0755 41 1 3.7930 -4.4235 -0.7716 42 1 2.8522 -3.1023 -1.5326 43 1 4.8020 -2.1961 -2.6255 44 1 5.1092 -3.9608 -2.7352 45 1 6.9764 -2.3820 -1.5992 46 1 6.5654 -3.9384 -0.8154 47 1 5.8181 -1.1314 -0.0057 48 1 6.0864 -2.5699 1.0181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319370900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:05 Heat of formation + Delta-G solvation = -104.061172 kcal Electronic energy + Delta-G solvation = -29664.558476 eV Core-core repulsion = 25653.547512 eV Total energy + Delta-G solvation = -4011.010965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -39.67056 -38.37942 -37.07183 -36.73003 -35.89397 -34.18055 -33.37502 -32.44986 -30.98323 -28.62347 -28.33808 -27.29583 -24.91361 -23.67399 -22.81223 -21.58016 -20.60716 -19.80121 -18.80546 -18.56637 -17.58647 -17.32888 -16.82739 -16.60650 -15.85208 -15.57852 -15.25959 -14.89678 -14.71781 -14.48147 -14.35080 -14.14351 -13.87112 -13.40744 -13.12938 -12.98488 -12.75834 -12.61202 -12.23383 -12.14254 -12.11492 -12.02661 -11.94803 -11.83295 -11.67843 -11.27891 -11.27074 -10.88327 -10.80393 -10.72684 -10.66928 -10.46288 -10.38864 -10.21983 -10.17933 -10.00245 -9.58130 -9.56537 -8.95686 -8.49663 -7.34363 -5.81184 -3.18288 -0.02917 2.52231 2.94080 3.27352 3.31845 3.38668 3.45036 3.52341 3.91473 4.15472 4.26789 4.41888 4.50217 4.52035 4.65052 4.91457 4.98572 5.01419 5.06887 5.11918 5.20178 5.24882 5.36985 5.40444 5.50650 5.51537 5.54729 5.60484 5.68631 5.73988 5.85362 5.87369 6.01384 6.10970 6.20517 6.22923 6.36444 6.47027 6.50058 6.70332 6.76100 6.92202 7.02680 7.91731 7.96437 8.37305 8.57815 9.14755 9.86356 10.05525 11.36834 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.003615 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.615291 B = 7744.376641 C = 9118.275929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.194 3.806 11 C 0.118 3.882 12 N -0.696 5.696 13 C 0.496 3.504 14 O -0.544 6.544 15 C -0.124 4.124 16 C -0.530 4.530 17 H 0.154 0.846 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.608 4.608 21 S 2.390 3.610 22 O -0.916 6.916 23 O -0.938 6.938 24 C -0.131 4.131 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.130 4.130 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.400 0.600 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.281 -2.118 14.344 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.380 5.380 10 C 0.102 3.898 11 C -0.008 4.008 12 N -0.344 5.344 13 C 0.281 3.719 14 O -0.423 6.423 15 C -0.165 4.165 16 C -0.640 4.640 17 H 0.172 0.828 18 C -0.160 4.160 19 C -0.151 4.151 20 C -0.736 4.736 21 S 2.571 3.429 22 O -0.913 6.913 23 O -0.935 6.935 24 C -0.171 4.171 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.168 4.168 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.234 0.766 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.126 -3.637 13.953 18.840 hybrid contribution 0.168 2.384 0.394 2.423 sum 12.294 -1.253 14.347 18.935 Atomic orbital electron populations 1.69699 1.05104 1.25677 1.57343 1.24657 0.95098 0.96945 1.02109 0.86638 0.79080 0.85413 0.77767 1.21240 1.21998 1.20411 1.18953 0.80453 0.94606 1.42731 0.89082 1.42913 1.04071 1.02095 1.88918 1.20439 0.89771 0.87643 0.91899 1.21927 1.02053 0.91361 0.85427 1.45626 1.60947 1.21583 1.06290 1.20489 0.79030 0.87645 0.84771 1.90801 1.43265 1.23281 1.84973 1.21370 1.04273 1.00709 0.90175 1.30225 1.17001 1.15659 1.01123 0.82793 1.22367 1.05419 0.98099 0.90096 1.21874 0.99602 0.94420 0.99232 1.30658 1.08728 1.07871 1.26371 1.09307 0.76947 0.77932 0.78717 1.93629 1.76372 1.39434 1.81882 1.93579 1.35358 1.86227 1.78349 1.22811 0.99612 0.98350 0.96295 1.22415 0.94827 1.01010 0.97303 1.22307 0.97639 0.99783 0.96127 1.22487 0.95430 1.00497 0.98410 0.93120 0.80592 0.92621 0.90634 0.76551 0.87251 0.86513 0.89374 0.88031 0.89082 0.89604 0.84845 0.84628 0.92504 0.89772 0.91540 0.92456 0.92337 0.91986 0.91666 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.97 55.49 0.78 -27.42 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 20.73 27.68 -169.99 -4.71 16.03 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -5.95 6.61 56.52 0.37 -5.58 16 7 C -0.24 -6.15 8.87 -15.06 -0.13 -6.28 16 8 H 0.09 2.62 7.45 -52.49 -0.39 2.23 16 9 N -0.74 -15.48 4.55 -46.20 -0.21 -15.69 16 10 C 0.19 3.40 0.68 -130.70 -0.09 3.31 16 11 C 0.12 2.18 3.99 -4.04 -0.02 2.17 16 12 N -0.70 -11.99 5.10 -60.29 -0.31 -12.30 16 13 C 0.50 8.64 7.65 -10.98 -0.08 8.56 16 14 O -0.54 -11.37 14.73 0.83 0.01 -11.35 16 15 C -0.12 -1.54 5.09 -27.88 -0.14 -1.68 16 16 C -0.53 -5.76 2.68 -25.65 -0.07 -5.83 16 17 H 0.15 1.77 7.88 -51.93 -0.41 1.36 16 18 C -0.12 -0.82 5.90 -25.19 -0.15 -0.96 16 19 C -0.11 -0.65 6.39 -25.66 -0.16 -0.82 16 20 C -0.61 -4.36 7.26 37.77 0.27 -4.08 16 21 S 2.39 29.67 5.10 -107.50 -0.55 29.12 16 22 O -0.92 -15.63 17.51 -61.44 -1.08 -16.70 16 23 O -0.94 -13.88 17.16 -57.71 -0.99 -14.87 16 24 C -0.13 -2.22 5.95 -25.03 -0.15 -2.37 16 25 C -0.12 -1.70 6.91 -24.70 -0.17 -1.87 16 26 C -0.12 -1.56 6.83 -25.07 -0.17 -1.74 16 27 C -0.13 -1.88 5.80 -25.61 -0.15 -2.03 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.36 7.45 5.20 -40.82 -0.21 7.24 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.64 7.49 -51.93 -0.39 1.25 16 32 H 0.40 6.21 7.99 -40.82 -0.33 5.89 16 33 H 0.11 1.13 7.48 -51.93 -0.39 0.74 16 34 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.14 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 42 H 0.08 1.67 7.11 -51.93 -0.37 1.30 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.93 7.44 -51.93 -0.39 0.54 16 48 H 0.07 0.90 7.54 -51.93 -0.39 0.51 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -36.70 385.54 -10.45 -47.15 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -7.90 Total: 13.73 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.31 Total: -13.50 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.26 Total: -55.40 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -2.05 Total: -42.93 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.03 kcal Atomic # 16 Polarization: 29.67 SS G_CDS: -0.55 Total: 29.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.70 -10.45 -47.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319370900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.908 kcal (2) G-P(sol) polarization free energy of solvation -36.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds