Wall clock time and date at job start Wed Apr 1 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47062 * 300.00056 * 3 2 1 6 6 H 1.48506 * 109.46890 * 60.00104 * 3 2 1 7 7 C 1.37880 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47473 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00376 * 179.97438 * 11 10 9 13 13 O 1.21352 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.49441 * 120.00194 * 179.97438 * 12 11 10 15 15 O 1.21352 * 120.00052 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00194 * 179.97438 * 14 12 11 17 17 C 1.46500 * 120.00376 * 180.02562 * 16 14 12 18 18 C 1.52997 * 109.47473 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 16 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 17 21 21 C 1.36037 * 126.34815 * 264.68633 * 20 19 18 22 22 N 1.30107 * 110.10182 * 179.87780 * 21 20 19 23 23 C 1.35783 * 109.64164 * 0.39107 * 22 21 20 24 24 C 1.39747 * 133.60288 * 179.76274 * 23 22 21 25 25 C 1.36600 * 119.88568 * 180.02562 * 24 23 22 26 26 C 1.38771 * 120.67065 * 359.97394 * 25 24 23 27 27 C 1.37856 * 120.45260 * 0.04742 * 26 25 24 28 28 C 1.38055 * 126.35328 * 84.99901 * 20 19 18 29 29 H 0.97002 * 119.99768 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 31 31 H 1.09001 * 109.47380 * 300.00095 * 9 7 2 32 32 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 33 33 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 34 34 H 0.97004 * 119.99396 * 359.97438 * 11 10 9 35 35 H 0.97004 * 120.00228 * 0.02562 * 16 14 12 36 36 H 1.09002 * 109.47129 * 59.99747 * 17 16 14 37 37 H 1.08998 * 109.46845 * 300.00553 * 17 16 14 38 38 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 39 39 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 40 40 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 41 41 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 42 42 H 1.08003 * 124.94734 * 0.02562 * 21 20 19 43 43 H 1.08001 * 120.05734 * 359.97438 * 24 23 22 44 44 H 1.08001 * 119.66102 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.77568 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.15578 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5126 -4.9309 -0.0012 12 6 2.1864 -6.0981 -0.0018 13 8 3.3999 -6.0981 -0.0014 14 6 1.4392 -7.3923 -0.0018 15 8 0.2256 -7.3923 -0.0018 16 7 2.1130 -8.5595 -0.0030 17 6 1.3805 -9.8282 -0.0036 18 6 2.3747 -10.9912 -0.0043 19 6 1.6096 -12.3162 -0.0055 20 7 2.5615 -13.4297 -0.0055 21 6 3.0091 -14.1078 -1.0966 22 7 3.8481 -15.0339 -0.7344 23 6 3.9897 -15.0187 0.6160 24 6 4.7423 -15.7795 1.5147 25 6 4.6715 -15.5180 2.8536 26 6 3.8583 -14.5014 3.3343 27 6 3.1067 -13.7384 2.4663 28 6 3.1662 -13.9894 1.1022 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8718 -3.6044 0.8895 33 1 2.8717 -3.6044 -0.8905 34 1 0.5426 -4.9308 -0.0011 35 1 3.0830 -8.5596 -0.0034 36 1 0.7534 -9.8853 -0.8933 37 1 0.7542 -9.8865 0.8866 38 1 3.0014 -10.9339 0.8857 39 1 3.0012 -10.9330 -0.8943 40 1 0.9827 -12.3746 0.8842 41 1 0.9832 -12.3732 -0.8957 42 1 2.7130 -13.9053 -2.1153 43 1 5.3781 -16.5733 1.1515 44 1 5.2543 -16.1085 3.5450 45 1 3.8136 -14.3069 4.3958 46 1 2.4758 -12.9482 2.8456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321922464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:34 Heat of formation + Delta-G solvation = -8.278458 kcal Electronic energy + Delta-G solvation = -27425.432414 eV Core-core repulsion = 23315.423699 eV Total energy + Delta-G solvation = -4110.008715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.57117 -40.52450 -38.48961 -37.83275 -36.61610 -35.29295 -34.52296 -32.90595 -31.97591 -30.37867 -29.85920 -29.72762 -27.00372 -25.37769 -23.70975 -23.61535 -22.56399 -22.30788 -21.14973 -20.94105 -20.21218 -18.39212 -17.71969 -17.66460 -16.86934 -16.42321 -16.32554 -16.20710 -15.84612 -15.50455 -15.40498 -14.87837 -14.55003 -14.50087 -14.37927 -14.15744 -14.00719 -13.53500 -13.39995 -13.25579 -12.81180 -12.47050 -12.38332 -12.36096 -12.08320 -11.83320 -11.69012 -11.61227 -11.27318 -11.10786 -10.84781 -10.68190 -10.45200 -10.35528 -9.85283 -9.53656 -9.50878 -9.25090 -8.79242 -8.75978 -8.53249 -8.45867 -6.13649 -4.17360 0.54806 1.10501 1.50503 2.02083 2.35658 2.47414 3.25571 3.33014 3.33370 3.37765 3.48732 3.73275 3.85491 3.95086 4.02823 4.27287 4.32015 4.38353 4.55790 4.56954 4.63298 4.67887 4.70382 4.99441 5.02486 5.03964 5.09966 5.23503 5.28552 5.35900 5.43328 5.72002 5.92813 5.99272 6.11257 6.12065 6.12599 6.18713 6.45073 6.52997 6.63712 6.66055 6.90232 7.40704 7.44317 7.53331 7.56861 7.82288 7.83677 8.15527 8.27738 8.88458 9.47861 10.97840 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.001378 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.752222 B =20307.788286 C =20645.685214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.685 5.685 12 C 0.497 3.503 13 O -0.533 6.533 14 C 0.509 3.491 15 O -0.518 6.518 16 N -0.707 5.707 17 C 0.122 3.878 18 C -0.152 4.152 19 C 0.116 3.884 20 N -0.492 5.492 21 C 0.262 3.738 22 N -0.498 5.498 23 C 0.043 3.957 24 C -0.065 4.065 25 C -0.129 4.129 26 C -0.102 4.102 27 C -0.110 4.110 28 C 0.048 3.952 29 H 0.262 0.738 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.414 0.586 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.214 0.786 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -32.337 2.477 32.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.276 3.724 13 O -0.411 6.411 14 C 0.290 3.710 15 O -0.393 6.393 16 N -0.362 5.362 17 C -0.002 4.002 18 C -0.190 4.190 19 C -0.007 4.007 20 N -0.182 5.182 21 C -0.024 4.024 22 N -0.216 5.216 23 C -0.075 4.075 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.121 4.121 27 C -0.131 4.131 28 C -0.061 4.061 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.870 -32.651 1.940 32.937 hybrid contribution -0.107 1.588 0.404 1.642 sum 3.762 -31.063 2.344 31.378 Atomic orbital electron populations 1.69966 1.06105 1.26872 1.50089 1.25001 0.94898 0.99464 0.94893 0.86442 0.80113 0.83258 0.77656 1.19576 1.20902 1.20910 1.21048 0.93267 0.90211 1.51698 0.92098 1.19367 0.94194 0.90887 0.98270 1.21954 0.96292 0.80694 1.01391 1.46244 1.11808 1.05796 1.69715 1.19929 0.87708 0.85218 0.79542 1.90740 1.13206 1.87503 1.49678 1.20480 0.87717 0.85553 0.77207 1.90766 1.13421 1.87668 1.47455 1.45677 1.11514 1.04764 1.74261 1.21266 0.94237 0.81315 1.03411 1.22204 0.99150 0.92933 1.04762 1.21702 0.90162 0.83364 1.05484 1.45439 1.37816 1.28972 1.05953 1.25405 0.93603 0.89838 0.93518 1.70473 1.18548 1.21493 1.11080 1.19091 1.00288 0.97772 0.90366 1.20051 0.98052 0.98665 0.91670 1.20674 1.00412 0.98930 0.94909 1.20932 0.96317 0.95443 0.99443 1.19994 1.02305 1.01798 0.88964 1.18911 0.99459 0.98096 0.89635 0.92810 0.95631 0.95645 0.91807 0.91811 0.75363 0.74977 0.90463 0.90576 0.90083 0.89933 0.88697 0.87883 0.76983 0.85415 0.85333 0.85215 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.41 5.61 -4.04 -0.02 2.39 16 11 N -0.68 -12.02 5.55 -60.73 -0.34 -12.35 16 12 C 0.50 8.13 7.89 -11.59 -0.09 8.03 16 13 O -0.53 -9.70 16.48 5.49 0.09 -9.61 16 14 C 0.51 6.95 7.89 -11.59 -0.09 6.86 16 15 O -0.52 -8.05 16.48 5.49 0.09 -7.96 16 16 N -0.71 -6.85 5.55 -60.73 -0.34 -7.19 16 17 C 0.12 0.78 5.67 -4.04 -0.02 0.75 16 18 C -0.15 -0.66 5.65 -26.73 -0.15 -0.81 16 19 C 0.12 0.40 6.16 -4.04 -0.02 0.38 16 20 N -0.49 -3.17 2.81 -115.80 -0.32 -3.49 16 21 C 0.26 1.80 12.49 -89.79 -1.12 0.68 16 22 N -0.50 -5.11 11.27 -12.05 -0.14 -5.24 16 23 C 0.04 0.43 7.23 -84.70 -0.61 -0.18 16 24 C -0.06 -0.55 10.05 -39.61 -0.40 -0.94 16 25 C -0.13 -0.86 9.96 -39.98 -0.40 -1.26 16 26 C -0.10 -0.65 10.03 -39.52 -0.40 -1.05 16 27 C -0.11 -0.79 10.05 -39.50 -0.40 -1.18 16 28 C 0.05 0.41 6.87 -83.99 -0.58 -0.17 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.41 6.84 7.94 -40.82 -0.32 6.52 16 35 H 0.41 3.69 7.94 -40.82 -0.32 3.36 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.10 0.15 8.13 -51.93 -0.42 -0.28 16 42 H 0.21 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -34.90 401.14 -10.58 -45.48 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.53 Total: 2.72 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -4.86 Total: 0.64 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.40 Total: -53.33 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.18 Total: -17.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.90 -10.58 -45.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321922464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.206 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds