Wall clock time and date at job start Wed Apr 1 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47062 * 300.00056 * 3 2 1 6 6 H 1.48506 * 109.46890 * 60.00104 * 3 2 1 7 7 C 1.37880 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47473 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00376 * 179.97438 * 11 10 9 13 13 O 1.21352 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.49441 * 120.00194 * 179.97438 * 12 11 10 15 15 O 1.21352 * 120.00052 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00194 * 179.97438 * 14 12 11 17 17 C 1.46500 * 120.00376 * 180.02562 * 16 14 12 18 18 C 1.52997 * 109.47473 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 16 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 17 21 21 C 1.36037 * 126.34815 * 264.68633 * 20 19 18 22 22 N 1.30107 * 110.10182 * 179.87780 * 21 20 19 23 23 C 1.35783 * 109.64164 * 0.39107 * 22 21 20 24 24 C 1.39747 * 133.60288 * 179.76274 * 23 22 21 25 25 C 1.36600 * 119.88568 * 180.02562 * 24 23 22 26 26 C 1.38771 * 120.67065 * 359.97394 * 25 24 23 27 27 C 1.37856 * 120.45260 * 0.04742 * 26 25 24 28 28 C 1.38055 * 126.35328 * 84.99901 * 20 19 18 29 29 H 0.97002 * 119.99768 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 31 31 H 1.09001 * 109.47380 * 300.00095 * 9 7 2 32 32 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 33 33 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 34 34 H 0.97004 * 119.99396 * 359.97438 * 11 10 9 35 35 H 0.97004 * 120.00228 * 0.02562 * 16 14 12 36 36 H 1.09002 * 109.47129 * 59.99747 * 17 16 14 37 37 H 1.08998 * 109.46845 * 300.00553 * 17 16 14 38 38 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 39 39 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 40 40 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 41 41 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 42 42 H 1.08003 * 124.94734 * 0.02562 * 21 20 19 43 43 H 1.08001 * 120.05734 * 359.97438 * 24 23 22 44 44 H 1.08001 * 119.66102 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.77568 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.15578 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5126 -4.9309 -0.0012 12 6 2.1864 -6.0981 -0.0018 13 8 3.3999 -6.0981 -0.0014 14 6 1.4392 -7.3923 -0.0018 15 8 0.2256 -7.3923 -0.0018 16 7 2.1130 -8.5595 -0.0030 17 6 1.3805 -9.8282 -0.0036 18 6 2.3747 -10.9912 -0.0043 19 6 1.6096 -12.3162 -0.0055 20 7 2.5615 -13.4297 -0.0055 21 6 3.0091 -14.1078 -1.0966 22 7 3.8481 -15.0339 -0.7344 23 6 3.9897 -15.0187 0.6160 24 6 4.7423 -15.7795 1.5147 25 6 4.6715 -15.5180 2.8536 26 6 3.8583 -14.5014 3.3343 27 6 3.1067 -13.7384 2.4663 28 6 3.1662 -13.9894 1.1022 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8718 -3.6044 0.8895 33 1 2.8717 -3.6044 -0.8905 34 1 0.5426 -4.9308 -0.0011 35 1 3.0830 -8.5596 -0.0034 36 1 0.7534 -9.8853 -0.8933 37 1 0.7542 -9.8865 0.8866 38 1 3.0014 -10.9339 0.8857 39 1 3.0012 -10.9330 -0.8943 40 1 0.9827 -12.3746 0.8842 41 1 0.9832 -12.3732 -0.8957 42 1 2.7130 -13.9053 -2.1153 43 1 5.3781 -16.5733 1.1515 44 1 5.2543 -16.1085 3.5450 45 1 3.8136 -14.3069 4.3958 46 1 2.4758 -12.9482 2.8456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321922464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:33 Heat of formation + Delta-G solvation = -31.204982 kcal Electronic energy + Delta-G solvation = -27426.426583 eV Core-core repulsion = 23315.423699 eV Total energy + Delta-G solvation = -4111.002884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.07255 -41.70343 -39.70387 -38.33579 -37.34340 -36.72356 -35.37043 -34.78465 -32.57237 -31.70001 -30.91368 -30.24035 -27.94339 -26.81541 -24.85460 -24.16712 -23.25178 -22.87821 -22.75416 -21.65711 -21.21485 -19.58549 -18.59160 -18.23952 -18.16077 -17.71016 -17.29320 -16.69889 -16.56268 -16.53626 -16.43087 -16.30960 -16.00148 -15.55892 -15.07300 -14.87471 -14.75467 -14.54662 -14.44098 -14.31850 -13.87817 -13.54581 -13.25814 -12.96826 -12.94476 -12.86699 -12.82375 -12.56897 -12.51680 -12.32433 -12.30112 -12.06844 -11.69424 -11.43160 -11.36647 -10.91409 -10.72335 -10.62629 -10.37125 -10.20564 -9.31842 -9.06869 -8.24115 -6.35103 0.03330 0.30626 0.57052 1.26294 1.42109 1.43615 1.56227 1.70051 1.87114 2.10781 2.39568 2.67438 2.93425 3.11158 3.37571 3.41566 3.61106 3.67871 3.84517 3.94183 4.13685 4.15768 4.23362 4.38053 4.39196 4.44370 4.51374 4.52459 4.60789 4.64603 4.80655 4.83927 4.92361 4.99754 5.07178 5.13516 5.25880 5.42078 5.47227 5.54461 5.59515 5.60729 5.74989 5.90099 5.97524 6.12574 6.23055 6.33390 6.68682 6.79241 6.91401 6.91648 7.34651 8.88020 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.001378 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.752222 B =20307.788286 C =20645.685214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.018 3.982 10 C 0.137 3.863 11 N -0.688 5.688 12 C 0.498 3.502 13 O -0.551 6.551 14 C 0.517 3.483 15 O -0.539 6.539 16 N -0.689 5.689 17 C 0.120 3.880 18 C -0.138 4.138 19 C 0.115 3.885 20 N -0.488 5.488 21 C 0.266 3.734 22 N -0.544 5.544 23 C 0.009 3.991 24 C -0.090 4.090 25 C -0.127 4.127 26 C -0.107 4.107 27 C -0.116 4.116 28 C 0.031 3.969 29 H 0.265 0.735 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.415 0.585 35 H 0.419 0.581 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.250 0.750 43 H 0.128 0.872 44 H 0.151 0.849 45 H 0.154 0.846 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -32.708 2.731 33.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.340 5.340 12 C 0.278 3.722 13 O -0.430 6.430 14 C 0.297 3.703 15 O -0.416 6.416 16 N -0.343 5.343 17 C -0.003 4.003 18 C -0.177 4.177 19 C -0.007 4.007 20 N -0.178 5.178 21 C -0.019 4.019 22 N -0.263 5.263 23 C -0.109 4.109 24 C -0.110 4.110 25 C -0.147 4.147 26 C -0.126 4.126 27 C -0.137 4.137 28 C -0.078 4.078 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.251 0.749 35 H 0.256 0.744 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.266 0.734 43 H 0.146 0.854 44 H 0.169 0.831 45 H 0.172 0.828 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.054 -33.065 2.199 33.385 hybrid contribution -0.149 1.618 0.332 1.658 sum 3.904 -31.447 2.531 31.789 Atomic orbital electron populations 1.70078 1.07661 1.27947 1.51005 1.25895 0.95757 1.03213 0.94415 0.85367 0.79061 0.78663 0.77761 1.18662 1.20392 1.20408 1.21483 0.93752 0.91587 1.51483 0.91757 1.19188 0.94364 0.91911 0.96527 1.21473 0.95091 0.80850 1.01119 1.46072 1.11936 1.05486 1.70455 1.20418 0.87579 0.85881 0.78284 1.90727 1.14116 1.87948 1.50228 1.19855 0.87156 0.85382 0.77954 1.90770 1.13926 1.87732 1.49174 1.45705 1.11924 1.04727 1.71908 1.21494 0.94569 0.80009 1.04186 1.22056 0.98553 0.92542 1.04512 1.21905 0.89624 0.81756 1.07416 1.45579 1.37791 1.29201 1.05195 1.26134 0.92211 0.88646 0.94921 1.70423 1.20697 1.23648 1.11556 1.19495 1.01510 0.99053 0.90808 1.20281 0.98831 0.99299 0.92551 1.20982 1.00205 0.98975 0.94552 1.21302 0.95700 0.94947 1.00676 1.20297 1.02546 1.02276 0.88591 1.19163 0.99742 0.98215 0.90644 0.92582 0.97316 0.97340 0.92065 0.92054 0.74872 0.74372 0.89418 0.90040 0.90886 0.89722 0.87748 0.85138 0.73391 0.85397 0.83118 0.82800 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 0.87 5.09 29.85 0.15 1.03 16 10 C 0.14 5.62 5.61 86.38 0.48 6.11 16 11 N -0.69 -24.05 5.55 -464.42 -2.58 -26.63 16 12 C 0.50 15.87 7.89 87.27 0.69 16.56 16 13 O -0.55 -19.53 16.48 -3.25 -0.05 -19.58 16 14 C 0.52 13.32 7.89 87.27 0.69 14.01 16 15 O -0.54 -15.97 16.48 -3.25 -0.05 -16.03 16 16 N -0.69 -11.86 5.55 -464.42 -2.58 -14.44 16 17 C 0.12 1.19 5.67 86.38 0.49 1.68 16 18 C -0.14 -0.83 5.65 30.59 0.17 -0.65 16 19 C 0.11 0.46 6.16 86.38 0.53 1.00 16 20 N -0.49 -5.44 2.81 -520.28 -1.46 -6.90 16 21 C 0.27 3.32 12.49 180.06 2.25 5.57 16 22 N -0.54 -11.27 11.27 -192.03 -2.16 -13.44 16 23 C 0.01 0.18 7.23 39.45 0.29 0.47 16 24 C -0.09 -1.58 10.05 22.25 0.22 -1.35 16 25 C -0.13 -1.61 9.96 22.01 0.22 -1.39 16 26 C -0.11 -1.22 10.03 22.31 0.22 -1.00 16 27 C -0.12 -1.51 10.05 22.32 0.22 -1.29 16 28 C 0.03 0.51 6.87 38.86 0.27 0.78 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.41 13.89 7.94 -92.71 -0.74 13.15 16 35 H 0.42 6.59 7.94 -92.71 -0.74 5.85 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.13 -0.14 8.13 -2.39 -0.02 -0.16 16 42 H 0.25 0.72 8.06 -2.91 -0.02 0.69 16 43 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 44 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 46 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -76.30 401.14 0.57 -75.73 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.46 Total: 17.33 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 7.60 Total: 12.84 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -8.49 Total: -115.22 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.11 Total: -35.61 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -76.30 0.57 -75.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321922464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.527 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds