Wall clock time and date at job start Wed Apr 1 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00147 * 2 1 4 4 H 1.48500 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46664 * 299.99498 * 3 2 1 6 6 H 1.48503 * 109.47282 * 59.99489 * 3 2 1 7 7 C 1.38816 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99627 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99492 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46916 * 184.98423 * 10 9 7 12 12 H 1.08992 * 109.87229 * 55.65549 * 11 10 9 13 13 C 1.54329 * 109.88038 * 294.63643 * 11 10 9 14 14 C 1.55155 * 102.94476 * 218.38954 * 13 11 10 15 15 C 1.54914 * 101.58037 * 35.50471 * 14 13 11 16 16 N 1.47021 * 109.88312 * 176.83202 * 11 10 9 17 17 C 1.34773 * 125.64783 * 298.39330 * 16 11 10 18 18 O 1.21284 * 119.99970 * 4.91127 * 17 16 11 19 19 C 1.50702 * 120.00005 * 184.91094 * 17 16 11 20 20 S 1.81396 * 109.47192 * 180.02562 * 19 17 16 21 21 O 1.42110 * 108.57835 * 294.48490 * 20 19 17 22 22 O 1.42092 * 108.58218 * 65.51056 * 20 19 17 23 23 C 1.81397 * 101.92504 * 179.97438 * 20 19 17 24 24 C 1.54270 * 110.03240 * 302.90674 * 23 20 19 25 25 C 1.54962 * 104.15983 * 217.13508 * 24 23 20 26 26 C 1.54887 * 102.77935 * 37.88698 * 25 24 23 27 27 C 1.53867 * 110.03658 * 185.68808 * 23 20 19 28 28 H 0.97006 * 120.00000 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00358 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47297 * 64.98658 * 10 9 7 31 31 H 1.09000 * 109.47758 * 304.98155 * 10 9 7 32 32 H 1.09000 * 110.71537 * 100.02894 * 13 11 10 33 33 H 1.08999 * 110.72012 * 336.75894 * 13 11 10 34 34 H 1.08996 * 111.00585 * 277.43342 * 14 13 11 35 35 H 1.08989 * 111.00714 * 153.57863 * 14 13 11 36 36 H 1.08997 * 110.36489 * 81.82694 * 15 14 13 37 37 H 1.09001 * 110.36617 * 204.15566 * 15 14 13 38 38 H 1.09004 * 109.47095 * 299.99624 * 19 17 16 39 39 H 1.08994 * 109.47204 * 60.00035 * 19 17 16 40 40 H 1.09006 * 110.01921 * 64.29333 * 23 20 19 41 41 H 1.09003 * 110.48508 * 335.78333 * 24 23 20 42 42 H 1.09004 * 110.48435 * 98.42048 * 24 23 20 43 43 H 1.09000 * 110.71957 * 279.57327 * 25 24 23 44 44 H 1.08998 * 110.92235 * 156.29621 * 25 24 23 45 45 H 1.08999 * 110.48664 * 203.40768 * 26 25 24 46 46 H 1.08998 * 110.60101 * 80.81415 * 26 25 24 47 47 H 1.09006 * 110.03687 * 238.56876 * 27 23 20 48 48 H 1.09005 * 110.03478 * 359.95137 * 27 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0684 -4.8170 -0.1248 12 1 0.4536 -4.6850 -1.0150 13 6 0.1706 -4.8787 1.1289 14 6 0.0210 -6.4034 1.3745 15 6 1.4173 -6.9248 0.9525 16 7 1.7985 -6.0908 -0.2019 17 6 2.6723 -6.4381 -1.1675 18 8 2.9797 -5.6365 -2.0241 19 6 3.2673 -7.8226 -1.1827 20 16 4.3970 -7.9797 -2.5932 21 8 3.6404 -7.8830 -3.7923 22 8 5.4957 -7.1010 -2.3935 23 6 4.9836 -9.6870 -2.4153 24 6 5.6278 -9.8825 -1.0273 25 6 6.8216 -10.8338 -1.2940 26 6 7.3531 -10.3411 -2.6628 27 6 6.0798 -9.9788 -3.4549 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6160 -3.7542 0.9318 31 1 2.7500 -3.6769 -0.8414 32 1 -0.7996 -4.4230 0.9312 33 1 0.6583 -4.3975 1.9766 34 1 -0.7609 -6.8259 0.7436 35 1 -0.1725 -6.6125 2.4265 36 1 2.1318 -6.7966 1.7656 37 1 1.3583 -7.9732 0.6599 38 1 3.8171 -7.9920 -0.2568 39 1 2.4696 -8.5599 -1.2718 40 1 4.1535 -10.3819 -2.5429 41 1 5.9804 -8.9295 -0.6327 42 1 4.9187 -10.3425 -0.3390 43 1 6.4833 -11.8678 -1.3605 44 1 7.5841 -10.7273 -0.5225 45 1 7.9029 -11.1358 -3.1671 46 1 7.9857 -9.4626 -2.5350 47 1 5.7822 -10.8159 -4.0865 48 1 6.2589 -9.0948 -4.0670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324182521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:21 Heat of formation + Delta-G solvation = -126.927089 kcal Electronic energy + Delta-G solvation = -28980.189100 eV Core-core repulsion = 24968.186595 eV Total energy + Delta-G solvation = -4012.002505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43034 -38.98657 -38.86838 -38.02692 -37.05655 -36.49642 -33.78005 -32.93783 -31.43723 -30.29474 -29.97349 -29.48785 -26.79432 -24.97925 -23.65962 -22.34758 -21.92815 -21.63584 -20.43406 -19.69869 -19.25461 -18.65728 -17.91464 -17.82220 -17.26425 -17.00453 -16.56128 -16.39848 -16.09256 -15.74675 -15.35407 -15.20507 -15.07706 -14.95738 -14.41267 -14.14245 -13.96033 -13.73224 -13.70690 -13.65500 -13.16248 -13.10892 -13.08150 -12.97786 -12.82286 -12.80082 -12.28402 -12.18024 -12.16355 -12.06084 -11.98739 -11.96932 -11.89446 -11.79563 -11.61674 -11.48958 -11.37466 -11.12371 -10.99887 -9.84018 -9.09751 -8.02708 -5.32641 -1.17092 1.29265 1.41313 1.43872 1.54053 1.66341 1.72295 2.50320 2.68786 2.91748 3.22617 3.30030 3.33480 3.47038 3.60537 3.70970 3.84755 3.89590 3.94678 4.08017 4.16448 4.23581 4.28010 4.30225 4.36131 4.43025 4.50103 4.52436 4.70232 4.75395 4.78897 4.79747 4.89808 4.98744 5.01249 5.08395 5.08978 5.14251 5.18091 5.24426 5.29604 5.37527 5.40963 5.45290 6.19090 6.31926 6.82476 7.26012 7.95950 8.25024 9.20640 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.002686 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.855979 B =10420.443973 C =11470.344453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.736 5.736 10 C 0.148 3.852 11 C 0.131 3.869 12 H 0.053 0.947 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.086 3.914 16 N -0.599 5.599 17 C 0.531 3.469 18 O -0.589 6.589 19 C -0.633 4.633 20 S 2.412 3.588 21 O -0.983 6.983 22 O -0.977 6.977 23 C -0.540 4.540 24 C -0.122 4.122 25 C -0.115 4.115 26 C -0.135 4.135 27 C -0.117 4.117 28 H 0.255 0.745 29 H 0.378 0.622 30 H 0.019 0.981 31 H 0.004 0.996 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.205 0.795 39 H 0.213 0.787 40 H 0.187 0.813 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.110 0.890 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.210 -34.774 4.832 35.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.380 5.380 10 C 0.020 3.980 11 C 0.027 3.973 12 H 0.071 0.929 13 C -0.158 4.158 14 C -0.157 4.157 15 C -0.034 4.034 16 N -0.332 5.332 17 C 0.319 3.681 18 O -0.471 6.471 19 C -0.762 4.762 20 S 2.599 3.401 21 O -0.980 6.980 22 O -0.974 6.974 23 C -0.654 4.654 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.173 4.173 27 C -0.155 4.155 28 H 0.064 0.936 29 H 0.211 0.789 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.145 0.855 38 H 0.222 0.778 39 H 0.230 0.770 40 H 0.205 0.795 41 H 0.092 0.908 42 H 0.151 0.849 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.129 0.871 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.755 -33.605 3.694 34.686 hybrid contribution -0.144 1.503 -0.166 1.519 sum 7.611 -32.102 3.528 33.180 Atomic orbital electron populations 1.69805 1.06378 1.26309 1.58926 1.25574 0.96588 1.00984 1.03042 0.85042 0.77887 0.79448 0.77165 1.19766 1.21729 1.20807 1.19571 0.91150 0.85506 1.42233 0.91817 1.42304 1.05581 1.00565 1.89506 1.20997 0.94255 0.85739 0.97031 1.21674 0.92596 0.83129 0.99933 0.92869 1.22609 0.98842 0.99293 0.95006 1.22843 0.96372 0.92069 1.04406 1.22929 0.97058 0.96500 0.86926 1.48493 1.41786 1.17582 1.25325 1.19812 0.78871 0.88616 0.80756 1.90903 1.61737 1.54240 1.40193 1.30709 1.19039 1.01196 1.25250 1.08313 0.75634 0.79737 0.76442 1.93508 1.72715 1.87297 1.44441 1.93514 1.52956 1.64611 1.86289 1.30708 1.10551 1.18417 1.05728 1.22610 0.99623 1.02108 0.91710 1.22501 0.96819 0.99807 0.96150 1.22501 0.96141 1.01691 0.96933 1.22084 0.94148 1.02685 0.96623 0.93630 0.78913 0.96311 0.97790 0.90373 0.90908 0.89375 0.86504 0.89129 0.85496 0.77784 0.76965 0.79520 0.90833 0.84947 0.88767 0.89973 0.89278 0.92392 0.87132 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.18 13.06 21.65 0.28 -60.90 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.98 49.18 29.55 68.60 2.03 51.21 16 4 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.25 -15.64 9.99 84.03 0.84 -14.80 16 8 H 0.06 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -41.56 5.44 -343.44 -1.87 -43.43 16 10 C 0.15 7.09 5.63 86.38 0.49 7.58 16 11 C 0.13 4.78 3.00 45.35 0.14 4.92 16 12 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 13 C -0.12 -3.30 6.00 31.78 0.19 -3.11 16 14 C -0.12 -1.78 7.09 31.99 0.23 -1.55 16 15 C 0.09 1.20 6.74 86.86 0.59 1.79 16 16 N -0.60 -16.73 3.07 -788.02 -2.42 -19.15 16 17 C 0.53 16.87 7.69 87.66 0.67 17.54 16 18 O -0.59 -27.26 14.44 -0.18 0.00 -27.26 16 19 C -0.63 -9.83 4.88 71.24 0.35 -9.48 16 20 S 2.41 57.68 3.12 -56.49 -0.18 57.50 16 21 O -0.98 -33.31 17.95 -125.75 -2.26 -35.56 16 22 O -0.98 -33.73 17.57 -125.76 -2.21 -35.94 16 23 C -0.54 -5.17 3.38 31.32 0.11 -5.06 16 24 C -0.12 -0.63 5.49 31.70 0.17 -0.46 16 25 C -0.11 -0.61 6.91 31.91 0.22 -0.39 16 26 C -0.13 -1.38 6.83 31.67 0.22 -1.17 16 27 C -0.12 -1.48 6.48 31.32 0.20 -1.28 16 28 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 29 H 0.38 21.71 7.39 -92.71 -0.68 21.03 16 30 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 31 H 0.00 0.22 6.60 -2.39 -0.02 0.21 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.19 7.80 -2.39 -0.02 2.17 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.13 0.55 7.47 -2.39 -0.02 0.53 16 38 H 0.20 1.15 7.62 -2.39 -0.02 1.13 16 39 H 0.21 0.79 7.95 -2.39 -0.02 0.77 16 40 H 0.19 0.14 8.14 -2.38 -0.02 0.12 16 41 H 0.07 0.59 7.49 -2.39 -0.02 0.57 16 42 H 0.13 -0.45 8.14 -2.38 -0.02 -0.47 16 43 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 48 H 0.04 0.81 7.60 -2.38 -0.02 0.79 16 Total: -1.00 -103.98 392.93 -1.48 -105.46 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.26 Total: 17.32 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 4.87 Total: -9.24 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -4.00 Total: -123.48 kcal Atomic # 8 Polarization: -94.30 SS G_CDS: -4.47 Total: -98.77 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.03 Total: 51.21 kcal Atomic # 16 Polarization: 57.68 SS G_CDS: -0.18 Total: 57.50 kcal Total: -103.98 -1.48 -105.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324182521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.463 kcal (2) G-P(sol) polarization free energy of solvation -103.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds