Wall clock time and date at job start Wed Apr 1 2020 02:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99523 * 2 1 4 4 H 1.48502 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47244 * 299.99678 * 3 2 1 6 6 H 1.48496 * 109.47548 * 60.00015 * 3 2 1 7 7 C 1.38810 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00081 * 163.46917 * 7 2 1 9 9 N 1.36942 * 119.99849 * 343.47820 * 7 2 1 10 10 C 1.46922 * 120.62888 * 327.56789 * 9 7 2 11 11 C 1.53195 * 108.77662 * 233.88459 * 10 9 7 12 12 C 1.53038 * 109.31558 * 305.36942 * 11 10 9 13 13 C 1.53039 * 109.53612 * 61.36217 * 12 11 10 14 14 C 1.53002 * 109.52221 * 178.67279 * 13 12 11 15 15 O 1.42905 * 109.47288 * 185.25279 * 14 13 12 16 16 N 1.46492 * 109.50291 * 58.58884 * 13 12 11 17 17 C 1.34778 * 119.99878 * 64.36797 * 16 13 12 18 18 O 1.21642 * 119.99932 * 354.81269 * 17 16 13 19 19 C 1.47169 * 119.99813 * 174.81022 * 17 16 13 20 20 C 1.38583 * 120.73002 * 0.02562 * 19 17 16 21 21 C 1.38922 * 121.36533 * 180.02562 * 20 19 17 22 22 C 1.35823 * 122.59816 * 359.97438 * 21 20 19 23 23 C 1.40837 * 120.55640 * 359.97438 * 22 21 20 24 24 C 1.38427 * 134.90129 * 179.97438 * 23 22 21 25 25 N 1.33889 * 107.84575 * 179.97438 * 24 23 22 26 26 H 0.97001 * 125.01608 * 180.02562 * 25 24 23 27 27 N 1.39974 * 109.96633 * 0.02562 * 25 24 23 28 28 C 1.31483 * 109.01342 * 359.72915 * 27 25 24 29 29 C 1.46925 * 120.62816 * 147.85576 * 9 7 2 30 30 H 0.96998 * 120.00428 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.59106 * 353.67700 * 10 9 7 32 32 H 1.09002 * 109.58585 * 114.09869 * 10 9 7 33 33 H 1.08996 * 109.49626 * 185.41183 * 11 10 9 34 34 H 1.09004 * 109.49319 * 65.32058 * 11 10 9 35 35 H 1.09005 * 109.45536 * 301.34359 * 12 11 10 36 36 H 1.08999 * 109.46056 * 181.38315 * 12 11 10 37 37 H 1.09001 * 109.46941 * 305.24435 * 14 13 12 38 38 H 1.08995 * 109.47552 * 65.25041 * 14 13 12 39 39 H 0.96700 * 114.00451 * 179.97438 * 15 14 13 40 40 H 0.96994 * 120.00456 * 244.37623 * 16 13 12 41 41 H 1.07999 * 119.31710 * 0.02562 * 20 19 17 42 42 H 1.08003 * 118.70244 * 180.02562 * 21 20 19 43 43 H 1.07998 * 119.72386 * 179.97438 * 22 21 20 44 44 H 1.07998 * 126.07560 * 0.02562 * 24 23 22 45 45 H 1.09005 * 109.58306 * 245.90019 * 29 9 7 46 46 H 1.08995 * 109.59256 * 6.17567 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0568 -1.2215 -0.2656 9 7 1.3681 -2.3634 0.3383 10 6 0.2790 -2.3569 1.3244 11 6 0.5992 -3.3792 2.4195 12 6 0.8580 -4.7442 1.7778 13 6 2.0630 -4.6483 0.8393 14 6 2.3417 -6.0208 0.2232 15 8 3.5380 -5.9591 -0.5561 16 7 3.2369 -4.2037 1.5944 17 6 3.7423 -4.9803 2.5732 18 8 3.1698 -6.0046 2.8935 19 6 4.9868 -4.5889 3.2542 20 6 5.6512 -3.4249 2.9017 21 6 6.8270 -3.0431 3.5354 22 6 7.3941 -3.7757 4.5286 23 6 6.7981 -4.9755 4.9630 24 6 7.1051 -5.9292 5.9183 25 7 6.1527 -6.8694 5.8804 26 1 6.1236 -7.6555 6.4480 27 7 5.2051 -6.5506 4.9007 28 6 5.5471 -5.4185 4.3263 29 6 1.7593 -3.6405 -0.2738 30 1 -0.4851 0.8400 -0.0004 31 1 0.1913 -1.3641 1.7656 32 1 -0.6577 -2.6259 0.8361 33 1 -0.2445 -3.4537 3.1056 34 1 1.4865 -3.0602 2.9666 35 1 -0.0207 -5.0511 1.2105 36 1 1.0620 -5.4788 2.5568 37 1 2.4632 -6.7575 1.0173 38 1 1.5067 -6.3089 -0.4152 39 1 3.7767 -6.7962 -0.9773 40 1 3.6504 -3.3504 1.3901 41 1 5.2464 -2.8016 2.1180 42 1 7.3089 -2.1272 3.2266 43 1 8.3097 -3.4354 4.9891 44 1 7.9605 -5.9166 6.5775 45 1 0.9434 -4.0142 -0.8926 46 1 2.6469 -3.4941 -0.8893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325846566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:00 Heat of formation + Delta-G solvation = 41.943689 kcal Electronic energy + Delta-G solvation = -31322.631426 eV Core-core repulsion = 27214.800507 eV Total energy + Delta-G solvation = -4107.830919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.29257 -39.86131 -37.55407 -36.61501 -35.92956 -33.74055 -32.47532 -31.89601 -30.86595 -30.42030 -29.72796 -28.58944 -25.37343 -24.98048 -24.70897 -22.46111 -22.03977 -21.86568 -20.63547 -19.68237 -18.60830 -18.17040 -17.27027 -16.85563 -16.71006 -16.57003 -15.33080 -15.19989 -15.03226 -14.80015 -14.50197 -14.11206 -13.98002 -13.88098 -13.56236 -13.29271 -13.06127 -12.80215 -12.58135 -12.32957 -12.09926 -11.84872 -11.73141 -11.68382 -11.40025 -11.05459 -11.00956 -10.72249 -10.54400 -10.34735 -10.30077 -10.09930 -10.03189 -9.74161 -9.59179 -9.45014 -8.92349 -8.90722 -8.46314 -8.32364 -7.66746 -6.60977 -5.79178 -3.26346 0.31260 1.75419 2.20098 2.55696 3.28114 3.36910 3.44930 3.46337 3.66270 4.07945 4.16936 4.42536 4.48485 4.61978 4.87597 5.04078 5.11017 5.26800 5.30452 5.38022 5.43038 5.57407 5.65538 5.69825 5.78268 5.88753 5.94064 6.06015 6.14996 6.26272 6.31031 6.40085 6.47363 6.50677 6.57657 6.73251 6.74986 6.79417 6.89071 6.91531 6.98415 7.24444 7.41342 7.54886 7.66243 7.79919 7.96857 8.22820 8.46335 8.84889 9.21080 9.82939 10.42966 11.28869 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.003944 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.720026 B = 7097.934745 C = 8409.144272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.010 3.990 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.136 4.136 12 C -0.119 4.119 13 C 0.170 3.830 14 C 0.065 3.935 15 O -0.564 6.564 16 N -0.686 5.686 17 C 0.560 3.440 18 O -0.538 6.538 19 C -0.110 4.110 20 C -0.032 4.032 21 C -0.161 4.161 22 C -0.023 4.023 23 C -0.218 4.218 24 C 0.083 3.917 25 N -0.434 5.434 26 H 0.442 0.558 27 N -0.269 5.269 28 C 0.138 3.862 29 C 0.148 3.852 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.369 0.631 40 H 0.404 0.596 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.188 0.812 45 H 0.031 0.969 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.381 -11.485 9.847 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.310 5.310 10 C 0.047 3.953 11 C -0.175 4.175 12 C -0.158 4.158 13 C 0.082 3.918 14 C -0.014 4.014 15 O -0.368 6.368 16 N -0.337 5.337 17 C 0.347 3.653 18 O -0.417 6.417 19 C -0.116 4.116 20 C -0.054 4.054 21 C -0.181 4.181 22 C -0.043 4.043 23 C -0.229 4.229 24 C -0.074 4.074 25 N -0.134 5.134 26 H 0.286 0.714 27 N -0.094 5.094 28 C -0.020 4.020 29 C 0.021 3.979 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.214 0.786 40 H 0.240 0.760 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.204 0.796 45 H 0.048 0.952 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.912 -12.401 10.249 20.628 hybrid contribution 1.140 0.962 0.072 1.494 sum 14.052 -11.439 10.321 20.853 Atomic orbital electron populations 1.70054 1.05370 1.25451 1.53069 1.25139 0.95195 0.98483 1.00165 0.86285 0.79502 0.84087 0.77231 1.20084 1.21768 1.21599 1.19134 0.92256 0.84564 1.42914 0.91789 1.44016 1.40355 1.02089 1.44573 1.20735 0.89410 0.97312 0.87794 1.22091 1.00252 0.95868 0.99324 1.21747 0.96081 0.98944 0.98982 1.20933 0.85022 0.93178 0.92712 1.22651 0.86395 0.98393 0.93945 1.86508 1.44133 1.37441 1.68701 1.45671 1.30610 1.22431 1.34970 1.17809 0.83835 0.83928 0.79737 1.90710 1.60731 1.25548 1.64715 1.20044 0.97664 0.95969 0.97956 1.21392 0.93606 0.93475 0.96959 1.20389 0.97292 1.01522 0.98870 1.20239 0.97923 0.91315 0.94863 1.19605 0.99785 1.00274 1.03194 1.22698 0.95078 0.90232 0.99417 1.46564 1.17692 1.20257 1.28915 0.71362 1.77861 1.10481 1.16459 1.04645 1.21544 0.93210 0.92155 0.95086 1.21109 0.98653 0.86587 0.91564 0.93688 0.90390 0.96327 0.93378 0.92701 0.92192 0.91151 0.91741 0.93674 0.78607 0.75951 0.84538 0.85374 0.85768 0.79558 0.95151 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 11.50 55.49 0.64 -24.95 16 2 C 0.01 0.27 4.89 -17.43 -0.09 0.18 16 3 Si 0.90 21.04 29.58 -169.99 -5.03 16.02 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -6.78 9.53 -15.06 -0.14 -6.92 16 8 H 0.06 1.63 7.88 -52.49 -0.41 1.21 16 9 N -0.59 -14.20 2.82 -172.32 -0.49 -14.69 16 10 C 0.17 4.11 5.28 -3.71 -0.02 4.09 16 11 C -0.14 -2.78 5.93 -26.61 -0.16 -2.94 16 12 C -0.12 -2.27 4.54 -26.69 -0.12 -2.40 16 13 C 0.17 3.18 0.45 -131.70 -0.06 3.12 16 14 C 0.07 1.10 5.56 37.16 0.21 1.30 16 15 O -0.56 -9.00 13.08 -35.23 -0.46 -9.46 16 16 N -0.69 -12.65 3.89 -48.64 -0.19 -12.84 16 17 C 0.56 10.54 7.18 -12.63 -0.09 10.45 16 18 O -0.54 -11.31 12.64 5.24 0.07 -11.25 16 19 C -0.11 -1.83 6.05 -102.74 -0.62 -2.46 16 20 C -0.03 -0.44 9.50 -39.20 -0.37 -0.81 16 21 C -0.16 -1.82 9.83 -40.19 -0.39 -2.21 16 22 C -0.02 -0.23 10.02 -39.46 -0.40 -0.63 16 23 C -0.22 -2.61 6.34 -105.21 -0.67 -3.27 16 24 C 0.08 0.68 12.08 -16.59 -0.20 0.48 16 25 N -0.43 -4.27 7.18 30.86 0.22 -4.05 16 26 H 0.44 2.52 8.96 -182.69 -1.64 0.89 16 27 N -0.27 -4.27 12.24 34.36 0.42 -3.85 16 28 C 0.14 2.22 7.28 -80.98 -0.59 1.63 16 29 C 0.15 3.12 5.08 -3.71 -0.02 3.11 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.08 2.06 6.37 -51.93 -0.33 1.73 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 1.17 7.53 -51.93 -0.39 0.77 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.40 6.35 -51.93 -0.33 1.07 16 37 H 0.06 1.16 6.22 -51.93 -0.32 0.84 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.37 4.15 9.12 45.56 0.42 4.57 16 40 H 0.40 7.44 6.47 -40.82 -0.26 7.17 16 41 H 0.14 1.82 6.39 -52.49 -0.34 1.49 16 42 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.19 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.44 7.79 -51.93 -0.40 1.04 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -35.63 370.07 -9.50 -45.14 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.53 Total: 11.62 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -3.73 Total: 2.73 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.61 Total: -60.37 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.39 Total: -20.71 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.63 -9.50 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325846566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.080 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds