Wall clock time and date at job start Wed Apr 1 2020 02:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99523 * 2 1 4 4 H 1.48502 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47244 * 299.99678 * 3 2 1 6 6 H 1.48496 * 109.47548 * 60.00015 * 3 2 1 7 7 C 1.38810 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00081 * 163.46917 * 7 2 1 9 9 N 1.36942 * 119.99849 * 343.47820 * 7 2 1 10 10 C 1.46922 * 120.62888 * 327.56789 * 9 7 2 11 11 C 1.53195 * 108.77662 * 233.88459 * 10 9 7 12 12 C 1.53038 * 109.31558 * 305.36942 * 11 10 9 13 13 C 1.53039 * 109.53612 * 61.36217 * 12 11 10 14 14 C 1.53002 * 109.52221 * 178.67279 * 13 12 11 15 15 O 1.42905 * 109.47288 * 185.25279 * 14 13 12 16 16 N 1.46492 * 109.50291 * 58.58884 * 13 12 11 17 17 C 1.34778 * 119.99878 * 64.36797 * 16 13 12 18 18 O 1.21642 * 119.99932 * 354.81269 * 17 16 13 19 19 C 1.47169 * 119.99813 * 174.81022 * 17 16 13 20 20 C 1.38583 * 120.73002 * 0.02562 * 19 17 16 21 21 C 1.38922 * 121.36533 * 180.02562 * 20 19 17 22 22 C 1.35823 * 122.59816 * 359.97438 * 21 20 19 23 23 C 1.40837 * 120.55640 * 359.97438 * 22 21 20 24 24 C 1.38427 * 134.90129 * 179.97438 * 23 22 21 25 25 N 1.33889 * 107.84575 * 179.97438 * 24 23 22 26 26 H 0.97001 * 125.01608 * 180.02562 * 25 24 23 27 27 N 1.39974 * 109.96633 * 0.02562 * 25 24 23 28 28 C 1.31483 * 109.01342 * 359.72915 * 27 25 24 29 29 C 1.46925 * 120.62816 * 147.85576 * 9 7 2 30 30 H 0.96998 * 120.00428 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.59106 * 353.67700 * 10 9 7 32 32 H 1.09002 * 109.58585 * 114.09869 * 10 9 7 33 33 H 1.08996 * 109.49626 * 185.41183 * 11 10 9 34 34 H 1.09004 * 109.49319 * 65.32058 * 11 10 9 35 35 H 1.09005 * 109.45536 * 301.34359 * 12 11 10 36 36 H 1.08999 * 109.46056 * 181.38315 * 12 11 10 37 37 H 1.09001 * 109.46941 * 305.24435 * 14 13 12 38 38 H 1.08995 * 109.47552 * 65.25041 * 14 13 12 39 39 H 0.96700 * 114.00451 * 179.97438 * 15 14 13 40 40 H 0.96994 * 120.00456 * 244.37623 * 16 13 12 41 41 H 1.07999 * 119.31710 * 0.02562 * 20 19 17 42 42 H 1.08003 * 118.70244 * 180.02562 * 21 20 19 43 43 H 1.07998 * 119.72386 * 179.97438 * 22 21 20 44 44 H 1.07998 * 126.07560 * 0.02562 * 24 23 22 45 45 H 1.09005 * 109.58306 * 245.90019 * 29 9 7 46 46 H 1.08995 * 109.59256 * 6.17567 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0568 -1.2215 -0.2656 9 7 1.3681 -2.3634 0.3383 10 6 0.2790 -2.3569 1.3244 11 6 0.5992 -3.3792 2.4195 12 6 0.8580 -4.7442 1.7778 13 6 2.0630 -4.6483 0.8393 14 6 2.3417 -6.0208 0.2232 15 8 3.5380 -5.9591 -0.5561 16 7 3.2369 -4.2037 1.5944 17 6 3.7423 -4.9803 2.5732 18 8 3.1698 -6.0046 2.8935 19 6 4.9868 -4.5889 3.2542 20 6 5.6512 -3.4249 2.9017 21 6 6.8270 -3.0431 3.5354 22 6 7.3941 -3.7757 4.5286 23 6 6.7981 -4.9755 4.9630 24 6 7.1051 -5.9292 5.9183 25 7 6.1527 -6.8694 5.8804 26 1 6.1236 -7.6555 6.4480 27 7 5.2051 -6.5506 4.9007 28 6 5.5471 -5.4185 4.3263 29 6 1.7593 -3.6405 -0.2738 30 1 -0.4851 0.8400 -0.0004 31 1 0.1913 -1.3641 1.7656 32 1 -0.6577 -2.6259 0.8361 33 1 -0.2445 -3.4537 3.1056 34 1 1.4865 -3.0602 2.9666 35 1 -0.0207 -5.0511 1.2105 36 1 1.0620 -5.4788 2.5568 37 1 2.4632 -6.7575 1.0173 38 1 1.5067 -6.3089 -0.4152 39 1 3.7767 -6.7962 -0.9773 40 1 3.6504 -3.3504 1.3901 41 1 5.2464 -2.8016 2.1180 42 1 7.3089 -2.1272 3.2266 43 1 8.3097 -3.4354 4.9891 44 1 7.9605 -5.9166 6.5775 45 1 0.9434 -4.0142 -0.8926 46 1 2.6469 -3.4941 -0.8893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325846566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:59 Heat of formation + Delta-G solvation = 14.399676 kcal Electronic energy + Delta-G solvation = -31323.825824 eV Core-core repulsion = 27214.800507 eV Total energy + Delta-G solvation = -4109.025317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.17792 -41.29545 -38.95668 -37.70828 -37.35015 -35.42787 -34.00080 -32.97949 -32.31591 -32.01753 -30.99133 -29.60654 -27.27271 -26.60503 -25.65726 -23.98927 -23.51931 -22.75223 -22.26809 -20.85335 -20.10217 -19.04957 -18.63901 -18.35770 -18.15708 -17.61739 -16.86320 -16.54509 -16.36506 -16.07158 -15.78697 -15.62878 -15.28480 -15.05447 -14.98586 -14.71998 -14.59671 -14.24486 -14.04993 -13.96571 -13.45249 -13.12733 -12.97978 -12.88447 -12.78853 -12.68150 -12.59862 -12.45511 -12.16933 -11.94024 -11.79106 -11.52563 -11.44948 -11.23940 -11.17019 -10.97546 -10.54230 -10.32454 -9.87412 -9.74467 -8.61359 -8.58335 -7.84073 -5.34191 -0.57034 0.88343 1.24287 1.50347 1.52638 1.62722 1.86734 2.17601 2.34527 2.54284 2.98721 3.30320 3.32128 3.33414 3.61583 3.66739 3.90545 4.06418 4.12197 4.19539 4.26141 4.28061 4.34152 4.48698 4.51196 4.52898 4.61591 4.71807 4.78712 4.86353 4.89731 4.98547 5.01776 5.06223 5.17946 5.27885 5.35825 5.44917 5.50192 5.59813 5.65775 5.71655 5.79099 5.93002 6.32079 6.42607 6.66370 6.81262 6.90772 7.17195 7.46251 7.84380 8.41395 9.22642 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.003944 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.720026 B = 7097.934745 C = 8409.144272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.043 4.043 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.599 5.599 10 C 0.185 3.815 11 C -0.122 4.122 12 C -0.112 4.112 13 C 0.172 3.828 14 C 0.076 3.924 15 O -0.576 6.576 16 N -0.687 5.687 17 C 0.558 3.442 18 O -0.571 6.571 19 C -0.169 4.169 20 C -0.015 4.015 21 C -0.193 4.193 22 C 0.014 3.986 23 C -0.253 4.253 24 C 0.135 3.865 25 N -0.424 5.424 26 H 0.459 0.541 27 N -0.339 5.339 28 C 0.113 3.887 29 C 0.155 3.845 30 H 0.249 0.751 31 H 0.048 0.952 32 H 0.000 1.000 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.390 0.610 40 H 0.401 0.599 41 H 0.131 0.869 42 H 0.154 0.846 43 H 0.173 0.827 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.208 -11.745 11.664 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.239 4.239 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.322 5.322 10 C 0.059 3.941 11 C -0.162 4.162 12 C -0.151 4.151 13 C 0.084 3.916 14 C -0.003 4.003 15 O -0.383 6.383 16 N -0.337 5.337 17 C 0.348 3.652 18 O -0.452 6.452 19 C -0.176 4.176 20 C -0.037 4.037 21 C -0.212 4.212 22 C -0.006 4.006 23 C -0.263 4.263 24 C -0.024 4.024 25 N -0.124 5.124 26 H 0.306 0.694 27 N -0.166 5.166 28 C -0.044 4.044 29 C 0.029 3.971 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.239 0.761 40 H 0.238 0.762 41 H 0.148 0.852 42 H 0.172 0.828 43 H 0.191 0.809 44 H 0.269 0.731 45 H 0.046 0.954 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.757 -12.714 12.057 24.245 hybrid contribution 0.133 0.951 -0.365 1.027 sum 16.890 -11.763 11.692 23.672 Atomic orbital electron populations 1.70199 1.06882 1.25787 1.54865 1.25881 0.95896 1.01590 1.00521 0.85266 0.79197 0.79901 0.76444 1.18236 1.22303 1.22032 1.19476 0.92662 0.85375 1.41692 0.91182 1.44167 1.40207 1.02757 1.45073 1.20492 0.88774 0.96504 0.88306 1.21909 1.00241 0.95671 0.98343 1.21670 0.96767 0.97654 0.98963 1.20806 0.85297 0.93546 0.91954 1.22438 0.87375 0.96517 0.93983 1.86452 1.43794 1.39350 1.68676 1.45631 1.30458 1.22394 1.35252 1.18224 0.84429 0.83269 0.79256 1.90664 1.61958 1.26836 1.65760 1.19928 0.98288 0.98550 1.00837 1.21537 0.94047 0.92054 0.96087 1.20663 0.97020 1.03345 1.00209 1.20789 0.98053 0.89265 0.92479 1.20129 0.99153 1.02259 1.04765 1.23729 0.94596 0.87085 0.97037 1.46611 1.16968 1.21089 1.27759 0.69370 1.77757 1.13571 1.17773 1.07486 1.21764 0.94928 0.92467 0.95205 1.21087 0.98105 0.85774 0.92180 0.94223 0.93384 0.98146 0.91941 0.93780 0.91242 0.91674 0.92918 0.91905 0.76143 0.76243 0.85167 0.82808 0.80950 0.73102 0.95404 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 11.50 21.65 0.25 -54.60 16 2 C -0.04 -2.34 4.89 84.86 0.41 -1.92 16 3 Si 0.96 43.83 29.58 68.60 2.03 45.86 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.26 -13.95 9.53 84.03 0.80 -13.15 16 8 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 9 N -0.60 -29.77 2.82 -699.10 -1.97 -31.74 16 10 C 0.18 9.15 5.28 86.36 0.46 9.60 16 11 C -0.12 -5.17 5.93 30.67 0.18 -4.99 16 12 C -0.11 -4.39 4.54 30.62 0.14 -4.25 16 13 C 0.17 6.62 0.45 3.68 0.00 6.62 16 14 C 0.08 2.58 5.56 71.98 0.40 2.98 16 15 O -0.58 -18.32 13.08 -148.98 -1.95 -20.27 16 16 N -0.69 -26.35 3.89 -426.03 -1.66 -28.00 16 17 C 0.56 22.08 7.18 86.59 0.62 22.70 16 18 O -0.57 -25.26 12.64 -4.16 -0.05 -25.32 16 19 C -0.17 -5.85 6.05 -18.65 -0.11 -5.96 16 20 C -0.01 -0.41 9.50 22.52 0.21 -0.20 16 21 C -0.19 -3.91 9.83 21.87 0.21 -3.70 16 22 C 0.01 0.23 10.02 22.35 0.22 0.45 16 23 C -0.25 -5.22 6.34 -20.24 -0.13 -5.35 16 24 C 0.13 1.56 12.08 84.42 1.02 2.58 16 25 N -0.42 -7.24 7.18 -56.29 -0.40 -7.64 16 26 H 0.46 3.99 8.96 -213.40 -1.91 2.08 16 27 N -0.34 -10.81 12.24 -45.21 -0.55 -11.36 16 28 C 0.11 3.63 7.28 43.75 0.32 3.95 16 29 C 0.15 6.67 5.08 86.36 0.44 7.11 16 30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.05 2.65 6.37 -2.39 -0.02 2.64 16 32 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.04 1.94 7.53 -2.38 -0.02 1.93 16 35 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.06 2.66 6.35 -2.39 -0.02 2.65 16 37 H 0.05 1.95 6.22 -2.39 -0.01 1.93 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.39 8.52 9.12 -74.06 -0.68 7.84 16 40 H 0.40 15.44 6.47 -92.71 -0.60 14.84 16 41 H 0.13 3.61 6.39 -2.91 -0.02 3.59 16 42 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 44 H 0.25 -0.54 8.06 -2.91 -0.02 -0.57 16 45 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.06 2.72 7.79 -2.39 -0.02 2.70 16 Total: -1.00 -83.27 370.07 -1.23 -84.50 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -2.13 Total: 32.10 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 5.21 Total: 16.47 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -4.34 Total: -133.34 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -2.00 Total: -45.59 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -83.27 -1.23 -84.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325846566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.903 kcal (2) G-P(sol) polarization free energy of solvation -83.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds