Wall clock time and date at job start Wed Apr 1 2020 02:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99924 * 2 1 4 4 H 1.48498 * 109.47558 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47041 * 300.00505 * 3 2 1 6 6 H 1.48501 * 109.46932 * 59.99790 * 3 2 1 7 7 C 1.37871 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00233 * 359.72776 * 7 2 1 10 10 H 1.09003 * 109.49630 * 60.26604 * 9 7 2 11 11 C 1.53032 * 109.50160 * 180.33801 * 9 7 2 12 12 C 1.53041 * 109.53992 * 181.31272 * 11 9 7 13 13 C 1.53193 * 109.31046 * 298.63540 * 12 11 9 14 14 N 1.46924 * 108.77598 * 54.63755 * 13 12 11 15 15 C 1.34777 * 120.63152 * 126.43352 * 14 13 12 16 16 O 1.21352 * 119.99444 * 174.94935 * 15 14 13 17 17 C 1.49447 * 120.00080 * 354.94593 * 15 14 13 18 18 O 1.21354 * 119.99581 * 274.84247 * 17 15 14 19 19 N 1.34779 * 120.00124 * 94.84429 * 17 15 14 20 20 C 1.47222 * 121.30085 * 184.73459 * 19 17 15 21 21 C 1.53398 * 107.74959 * 115.79524 * 20 19 17 22 22 C 1.50411 * 110.70213 * 47.45472 * 21 20 19 23 23 N 1.32960 * 118.38111 * 160.44631 * 22 21 20 24 24 C 1.31581 * 121.10428 * 179.38669 * 23 22 21 25 25 N 1.31819 * 121.72934 * 0.02562 * 24 23 22 26 26 C 1.32217 * 120.57980 * 0.20816 * 25 24 23 27 27 C 1.37776 * 122.90444 * 340.20963 * 22 21 20 28 28 C 1.46793 * 121.30199 * 5.01628 * 19 17 15 29 29 C 1.46938 * 118.76245 * 306.40522 * 14 13 12 30 30 H 0.97002 * 120.00290 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46285 * 301.33405 * 11 9 7 32 32 H 1.09008 * 109.45891 * 61.30794 * 11 9 7 33 33 H 1.08997 * 109.49647 * 58.58378 * 12 11 9 34 34 H 1.09005 * 109.49823 * 178.68212 * 12 11 9 35 35 H 1.09002 * 109.58564 * 174.41957 * 13 12 11 36 36 H 1.08997 * 109.58725 * 294.84188 * 13 12 11 37 37 H 1.08997 * 109.74941 * 235.42240 * 20 19 17 38 38 H 1.08996 * 109.75088 * 356.15748 * 20 19 17 39 39 H 1.09001 * 109.34480 * 287.07592 * 21 20 19 40 40 H 1.08999 * 109.10865 * 167.67686 * 21 20 19 41 41 H 1.07995 * 119.13398 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.37669 * 179.97438 * 26 25 24 43 43 H 1.09001 * 109.46978 * 344.18438 * 28 19 17 44 44 H 1.08995 * 109.47024 * 104.17581 * 28 19 17 45 45 H 1.09000 * 109.55994 * 293.79219 * 29 14 13 46 46 H 1.08998 * 109.61638 * 173.36036 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 0.0051 10 1 0.6243 -2.5612 -0.8845 11 6 2.2452 -3.6627 0.0117 12 6 1.4813 -4.9886 -0.0156 13 6 0.6049 -5.0942 1.2364 14 7 -0.2539 -3.9046 1.3142 15 6 -1.5903 -4.0292 1.4365 16 8 -2.2799 -3.0428 1.5919 17 6 -2.2229 -5.3820 1.3806 18 8 -2.5033 -5.8769 0.3086 19 7 -2.4820 -6.0524 2.5208 20 6 -3.0086 -7.4270 2.4970 21 6 -1.9523 -8.3434 3.1276 22 6 -1.4474 -7.7624 4.4198 23 7 -0.8449 -8.5730 5.2845 24 6 -0.3722 -8.1194 6.4256 25 7 -0.4740 -6.8489 6.7621 26 6 -1.0646 -5.9845 5.9546 27 6 -1.5779 -6.4294 4.7426 28 6 -2.2559 -5.4383 3.8348 29 6 0.3715 -2.5762 1.2569 30 1 -0.4851 0.8400 -0.0004 31 1 2.8883 -3.5960 -0.8658 32 1 2.8553 -3.6139 0.9137 33 1 0.8519 -5.0275 -0.9046 34 1 2.1901 -5.8165 -0.0345 35 1 -0.0149 -5.9887 1.1742 36 1 1.2378 -5.1466 2.1222 37 1 -3.9334 -7.4771 3.0716 38 1 -3.1968 -7.7316 1.4676 39 1 -1.1176 -8.4611 2.4366 40 1 -2.3971 -9.3193 3.3225 41 1 0.1118 -8.8059 7.1043 42 1 -1.1466 -4.9444 6.2337 43 1 -1.6229 -4.5583 3.7205 44 1 -3.2120 -5.1443 4.2677 45 1 0.9851 -2.4231 2.1447 46 1 -0.4018 -1.8095 1.2079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336473922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:03 Heat of formation + Delta-G solvation = -13.320245 kcal Electronic energy + Delta-G solvation = -31173.237138 eV Core-core repulsion = 27063.009795 eV Total energy + Delta-G solvation = -4110.227343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75555 -40.55579 -38.70239 -37.01043 -36.80969 -34.59183 -33.49140 -32.56709 -31.95714 -31.58156 -29.95254 -27.20096 -26.18700 -25.18473 -24.95900 -23.66426 -23.15042 -21.96189 -21.29548 -19.59326 -18.77701 -17.94593 -17.56778 -17.19902 -16.62424 -16.29584 -16.17061 -15.91921 -15.21216 -14.81388 -14.59972 -14.38735 -14.33310 -14.03524 -13.88192 -13.84383 -13.59931 -13.36283 -12.93509 -12.78620 -12.73726 -12.61512 -12.26994 -12.06195 -11.91615 -11.37603 -11.14958 -11.09985 -10.99218 -10.81224 -10.57045 -10.47103 -10.32457 -10.02934 -9.68240 -9.58397 -9.37333 -9.23566 -9.12050 -8.95404 -8.52249 -8.02156 -6.07088 -4.15900 0.51276 0.68434 2.16996 2.28286 2.83070 3.26341 3.35154 3.37381 3.37983 3.50632 3.62987 3.86508 4.01498 4.16133 4.28473 4.38158 4.49181 4.65106 4.78642 4.97359 4.99813 5.12826 5.16570 5.23425 5.23992 5.36148 5.36693 5.49605 5.51201 5.55492 5.84851 5.96647 6.02838 6.07294 6.21271 6.46557 6.54637 6.59969 6.72381 6.85929 6.88389 6.93513 7.02363 7.49262 7.72043 7.72935 7.76045 7.83337 7.98383 8.24253 8.39868 8.88421 9.50390 10.98541 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.003265 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.436090 B = 8573.147469 C = 9025.978876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.038 3.962 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.110 3.890 14 N -0.584 5.584 15 C 0.504 3.496 16 O -0.509 6.509 17 C 0.526 3.474 18 O -0.507 6.507 19 N -0.608 5.608 20 C 0.111 3.889 21 C -0.089 4.089 22 C 0.190 3.810 23 N -0.521 5.521 24 C 0.294 3.706 25 N -0.518 5.518 26 C 0.164 3.836 27 C -0.200 4.200 28 C 0.158 3.842 29 C 0.111 3.889 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.197 0.803 42 H 0.174 0.826 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.050 0.950 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 -17.302 11.210 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.079 0.921 9 C 0.019 3.981 10 H 0.050 0.950 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.014 4.014 14 N -0.317 5.317 15 C 0.285 3.715 16 O -0.384 6.384 17 C 0.310 3.690 18 O -0.380 6.380 19 N -0.345 5.345 20 C -0.012 4.012 21 C -0.127 4.127 22 C 0.045 3.955 23 N -0.235 5.235 24 C 0.006 3.994 25 N -0.232 5.232 26 C -0.004 4.004 27 C -0.205 4.205 28 C 0.034 3.966 29 C -0.008 4.008 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.213 0.787 42 H 0.191 0.809 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.702 -17.526 11.292 21.174 hybrid contribution 0.143 1.384 -0.403 1.448 sum -3.559 -16.142 10.889 19.794 Atomic orbital electron populations 1.69873 1.05781 1.26908 1.49310 1.25057 0.94892 0.99355 0.94708 0.86514 0.80042 0.83643 0.77690 1.19759 1.20963 1.20925 1.21097 0.93002 0.89912 1.51844 0.92150 1.19003 0.92676 0.92555 0.93862 0.95011 1.21634 0.98540 0.93786 1.00838 1.21946 0.98606 0.99360 0.97292 1.21687 0.93544 0.86943 0.99219 1.48633 1.04220 1.09976 1.68892 1.19918 0.83656 0.88626 0.79288 1.90840 1.61496 1.37359 1.48724 1.20798 0.78607 0.85865 0.83771 1.90778 1.51776 1.67254 1.28206 1.48117 1.65381 1.15434 1.05538 1.21831 0.95660 0.79797 1.03879 1.20907 1.00177 0.99836 0.91810 1.21143 0.90523 0.89074 0.94725 1.68431 1.11199 1.39589 1.04252 1.24950 0.92460 0.90629 0.91385 1.68505 1.16167 1.04252 1.34246 1.23236 0.88711 1.00253 0.88224 1.21360 1.03693 0.96567 0.98847 1.20386 1.01024 0.94016 0.81168 1.22515 0.98887 0.80206 0.99221 0.92579 0.92658 0.93070 0.91666 0.91951 0.91779 0.91476 0.90029 0.87183 0.88356 0.87671 0.78668 0.80917 0.87788 0.88593 0.93150 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.94 11.39 55.43 0.63 -24.31 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -13.62 8.57 -34.44 -0.30 -13.92 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.91 2.25 -91.65 -0.21 0.71 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 12 C -0.13 -2.17 6.08 -26.61 -0.16 -2.34 16 13 C 0.11 1.71 6.36 -3.71 -0.02 1.69 16 14 N -0.58 -11.22 2.97 -173.27 -0.52 -11.73 16 15 C 0.50 9.89 5.58 -11.59 -0.06 9.83 16 16 O -0.51 -11.75 16.53 5.49 0.09 -11.66 16 17 C 0.53 8.66 5.49 -11.59 -0.06 8.60 16 18 O -0.51 -9.51 16.59 5.49 0.09 -9.42 16 19 N -0.61 -7.29 2.93 -174.61 -0.51 -7.80 16 20 C 0.11 0.98 6.47 -3.44 -0.02 0.96 16 21 C -0.09 -0.71 6.15 -27.82 -0.17 -0.88 16 22 C 0.19 1.84 6.65 -82.41 -0.55 1.30 16 23 N -0.52 -5.28 10.31 -11.00 -0.11 -5.39 16 24 C 0.29 2.72 12.28 -92.32 -1.13 1.59 16 25 N -0.52 -5.28 10.45 -14.56 -0.15 -5.43 16 26 C 0.16 1.51 10.94 -17.13 -0.19 1.33 16 27 C -0.20 -1.91 5.82 -104.62 -0.61 -2.52 16 28 C 0.16 1.62 6.16 -5.12 -0.03 1.58 16 29 C 0.11 2.53 5.38 -3.70 -0.02 2.51 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.95 8.14 -51.92 -0.42 0.52 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.92 6.31 -51.93 -0.33 0.59 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 1.03 7.07 -51.93 -0.37 0.67 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.10 1.21 6.50 -51.93 -0.34 0.88 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.13 3.36 5.15 -51.93 -0.27 3.09 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -32.98 373.38 -9.98 -42.96 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.34 Total: 1.72 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -3.77 Total: 9.76 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.66 Total: -54.67 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.18 Total: -21.08 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.98 -9.98 -42.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336473922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.637 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds