Wall clock time and date at job start Wed Apr 1 2020 02:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99924 * 2 1 4 4 H 1.48498 * 109.47558 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47041 * 300.00505 * 3 2 1 6 6 H 1.48501 * 109.46932 * 59.99790 * 3 2 1 7 7 C 1.37871 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00233 * 359.72776 * 7 2 1 10 10 H 1.09003 * 109.49630 * 60.26604 * 9 7 2 11 11 C 1.53032 * 109.50160 * 180.33801 * 9 7 2 12 12 C 1.53041 * 109.53992 * 181.31272 * 11 9 7 13 13 C 1.53193 * 109.31046 * 298.63540 * 12 11 9 14 14 N 1.46924 * 108.77598 * 54.63755 * 13 12 11 15 15 C 1.34777 * 120.63152 * 126.43352 * 14 13 12 16 16 O 1.21352 * 119.99444 * 174.94935 * 15 14 13 17 17 C 1.49447 * 120.00080 * 354.94593 * 15 14 13 18 18 O 1.21354 * 119.99581 * 274.84247 * 17 15 14 19 19 N 1.34779 * 120.00124 * 94.84429 * 17 15 14 20 20 C 1.47222 * 121.30085 * 184.73459 * 19 17 15 21 21 C 1.53398 * 107.74959 * 115.79524 * 20 19 17 22 22 C 1.50411 * 110.70213 * 47.45472 * 21 20 19 23 23 N 1.32960 * 118.38111 * 160.44631 * 22 21 20 24 24 C 1.31581 * 121.10428 * 179.38669 * 23 22 21 25 25 N 1.31819 * 121.72934 * 0.02562 * 24 23 22 26 26 C 1.32217 * 120.57980 * 0.20816 * 25 24 23 27 27 C 1.37776 * 122.90444 * 340.20963 * 22 21 20 28 28 C 1.46793 * 121.30199 * 5.01628 * 19 17 15 29 29 C 1.46938 * 118.76245 * 306.40522 * 14 13 12 30 30 H 0.97002 * 120.00290 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46285 * 301.33405 * 11 9 7 32 32 H 1.09008 * 109.45891 * 61.30794 * 11 9 7 33 33 H 1.08997 * 109.49647 * 58.58378 * 12 11 9 34 34 H 1.09005 * 109.49823 * 178.68212 * 12 11 9 35 35 H 1.09002 * 109.58564 * 174.41957 * 13 12 11 36 36 H 1.08997 * 109.58725 * 294.84188 * 13 12 11 37 37 H 1.08997 * 109.74941 * 235.42240 * 20 19 17 38 38 H 1.08996 * 109.75088 * 356.15748 * 20 19 17 39 39 H 1.09001 * 109.34480 * 287.07592 * 21 20 19 40 40 H 1.08999 * 109.10865 * 167.67686 * 21 20 19 41 41 H 1.07995 * 119.13398 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.37669 * 179.97438 * 26 25 24 43 43 H 1.09001 * 109.46978 * 344.18438 * 28 19 17 44 44 H 1.08995 * 109.47024 * 104.17581 * 28 19 17 45 45 H 1.09000 * 109.55994 * 293.79219 * 29 14 13 46 46 H 1.08998 * 109.61638 * 173.36036 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 0.0051 10 1 0.6243 -2.5612 -0.8845 11 6 2.2452 -3.6627 0.0117 12 6 1.4813 -4.9886 -0.0156 13 6 0.6049 -5.0942 1.2364 14 7 -0.2539 -3.9046 1.3142 15 6 -1.5903 -4.0292 1.4365 16 8 -2.2799 -3.0428 1.5919 17 6 -2.2229 -5.3820 1.3806 18 8 -2.5033 -5.8769 0.3086 19 7 -2.4820 -6.0524 2.5208 20 6 -3.0086 -7.4270 2.4970 21 6 -1.9523 -8.3434 3.1276 22 6 -1.4474 -7.7624 4.4198 23 7 -0.8449 -8.5730 5.2845 24 6 -0.3722 -8.1194 6.4256 25 7 -0.4740 -6.8489 6.7621 26 6 -1.0646 -5.9845 5.9546 27 6 -1.5779 -6.4294 4.7426 28 6 -2.2559 -5.4383 3.8348 29 6 0.3715 -2.5762 1.2569 30 1 -0.4851 0.8400 -0.0004 31 1 2.8883 -3.5960 -0.8658 32 1 2.8553 -3.6139 0.9137 33 1 0.8519 -5.0275 -0.9046 34 1 2.1901 -5.8165 -0.0345 35 1 -0.0149 -5.9887 1.1742 36 1 1.2378 -5.1466 2.1222 37 1 -3.9334 -7.4771 3.0716 38 1 -3.1968 -7.7316 1.4676 39 1 -1.1176 -8.4611 2.4366 40 1 -2.3971 -9.3193 3.3225 41 1 0.1118 -8.8059 7.1043 42 1 -1.1466 -4.9444 6.2337 43 1 -1.6229 -4.5583 3.7205 44 1 -3.2120 -5.1443 4.2677 45 1 0.9851 -2.4231 2.1447 46 1 -0.4018 -1.8095 1.2079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336473922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:02 Heat of formation + Delta-G solvation = -34.366997 kcal Electronic energy + Delta-G solvation = -31174.149794 eV Core-core repulsion = 27063.009795 eV Total energy + Delta-G solvation = -4111.139999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.59785 -41.80257 -40.07715 -38.49513 -37.98587 -35.39586 -35.30031 -33.61346 -33.40013 -32.36776 -31.68146 -28.35037 -27.36563 -26.89510 -26.00061 -24.47015 -24.30133 -23.56452 -22.38542 -21.02221 -19.96130 -19.30633 -18.44501 -18.35480 -18.17306 -17.59852 -17.39962 -16.97043 -16.54390 -16.07743 -15.91282 -15.79414 -15.34633 -15.24045 -15.09577 -14.80763 -14.70573 -14.53545 -14.44601 -14.30751 -13.92858 -13.67153 -13.52997 -13.37404 -12.92080 -12.78014 -12.73762 -12.56903 -12.33805 -12.24945 -12.07179 -11.91308 -11.72800 -11.52427 -11.14608 -11.00689 -10.63936 -10.53421 -10.43126 -10.29877 -10.07566 -9.66915 -8.12260 -6.28882 -0.18989 -0.02230 0.85898 1.02634 1.35377 1.42240 1.43900 1.55003 2.19656 2.42585 2.67482 2.94735 2.99879 3.17147 3.20939 3.36345 3.40716 3.71030 3.82895 3.93821 4.01788 4.12757 4.19364 4.20648 4.35855 4.41915 4.45166 4.57727 4.62283 4.66315 4.67466 4.74445 4.79111 4.91348 5.00580 5.08573 5.12642 5.18383 5.26409 5.35953 5.37964 5.57047 5.75525 5.84543 5.92196 5.93332 6.25157 6.30207 6.50164 6.77245 6.86231 7.03556 7.41726 8.91919 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.003265 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.436090 B = 8573.147469 C = 9025.978876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.035 3.965 10 H -0.015 1.015 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.108 3.892 14 N -0.584 5.584 15 C 0.498 3.502 16 O -0.556 6.556 17 C 0.535 3.465 18 O -0.536 6.536 19 N -0.593 5.593 20 C 0.109 3.891 21 C -0.081 4.081 22 C 0.184 3.816 23 N -0.532 5.532 24 C 0.291 3.709 25 N -0.536 5.536 26 C 0.162 3.838 27 C -0.203 4.203 28 C 0.159 3.841 29 C 0.125 3.875 30 H 0.261 0.739 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.223 0.777 42 H 0.190 0.810 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.055 0.945 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -19.615 12.756 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.016 3.984 10 H 0.003 0.997 11 C -0.141 4.141 12 C -0.165 4.165 13 C -0.013 4.013 14 N -0.317 5.317 15 C 0.280 3.720 16 O -0.434 6.434 17 C 0.318 3.682 18 O -0.412 6.412 19 N -0.327 5.327 20 C -0.012 4.012 21 C -0.120 4.120 22 C 0.040 3.960 23 N -0.246 5.246 24 C 0.004 3.996 25 N -0.249 5.249 26 C -0.006 4.006 27 C -0.208 4.208 28 C 0.035 3.965 29 C 0.004 3.996 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.146 0.854 41 H 0.239 0.761 42 H 0.207 0.793 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.074 0.926 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.547 -19.901 12.878 23.841 hybrid contribution -0.212 2.054 -0.827 2.225 sum -2.758 -17.847 12.050 21.710 Atomic orbital electron populations 1.70063 1.07412 1.27345 1.50622 1.25862 0.95524 1.02854 0.94494 0.85506 0.79279 0.79465 0.77410 1.18473 1.21190 1.20630 1.21496 0.93364 0.91129 1.51087 0.91729 1.18951 0.93161 0.94067 0.92262 0.99666 1.21512 0.97643 0.93444 1.01491 1.21910 0.98898 0.98996 0.96741 1.21948 0.93499 0.85841 1.00052 1.48600 1.04800 1.09891 1.68374 1.20575 0.83496 0.89802 0.78106 1.90803 1.62518 1.39402 1.50662 1.20026 0.78870 0.84592 0.84698 1.90772 1.53496 1.67502 1.29406 1.48111 1.63515 1.16328 1.04784 1.22132 0.96973 0.77609 1.04469 1.20901 0.99855 1.00356 0.90838 1.21411 0.90280 0.89109 0.95213 1.68502 1.11770 1.39688 1.04644 1.25530 0.91789 0.90820 0.91501 1.68579 1.16859 1.04813 1.34674 1.23548 0.87988 1.01041 0.87990 1.21223 1.04347 0.96389 0.98849 1.20474 1.01986 0.93650 0.80384 1.21945 0.97489 0.81334 0.98817 0.93003 0.92645 0.91689 0.93521 0.87665 0.89998 0.88917 0.87469 0.87445 0.88377 0.85373 0.76098 0.79312 0.89445 0.86589 0.92640 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.24 11.39 21.44 0.24 -54.00 16 2 C 0.01 0.67 5.30 84.65 0.45 1.12 16 3 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.53 -28.42 8.57 25.60 0.22 -28.20 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.71 2.25 -11.46 -0.03 1.69 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.10 -3.88 5.11 30.62 0.16 -3.73 16 12 C -0.13 -3.90 6.08 30.67 0.19 -3.71 16 13 C 0.11 3.19 6.36 86.36 0.55 3.74 16 14 N -0.58 -22.76 2.97 -820.45 -2.44 -25.20 16 15 C 0.50 20.07 5.58 87.27 0.49 20.56 16 16 O -0.56 -27.05 16.53 -3.25 -0.05 -27.10 16 17 C 0.54 17.48 5.49 87.27 0.48 17.96 16 18 O -0.54 -20.03 16.59 -3.26 -0.05 -20.08 16 19 N -0.59 -13.29 2.93 -824.69 -2.42 -15.70 16 20 C 0.11 1.64 6.47 86.37 0.56 2.20 16 21 C -0.08 -1.04 6.15 29.89 0.18 -0.86 16 22 C 0.18 3.06 6.65 42.19 0.28 3.34 16 23 N -0.53 -9.28 10.31 -188.72 -1.95 -11.23 16 24 C 0.29 4.64 12.28 180.94 2.22 6.86 16 25 N -0.54 -9.76 10.45 -199.99 -2.09 -11.84 16 26 C 0.16 2.67 10.94 84.80 0.93 3.60 16 27 C -0.20 -3.43 5.82 -19.86 -0.12 -3.55 16 28 C 0.16 3.00 6.16 85.52 0.53 3.53 16 29 C 0.13 5.93 5.38 86.36 0.46 6.39 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.08 2.16 6.31 -2.39 -0.02 2.14 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.11 1.77 7.07 -2.39 -0.02 1.76 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.22 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.09 2.00 6.50 -2.39 -0.02 1.99 16 44 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.08 4.71 5.15 -2.39 -0.01 4.70 16 Total: -1.00 -75.51 373.38 1.83 -73.68 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 1.01 Total: 15.34 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 7.55 Total: 30.94 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -8.65 Total: -117.97 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -0.11 Total: -47.18 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.51 1.83 -73.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336473922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.309 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds