Wall clock time and date at job start Wed Apr 1 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99998 * 2 1 4 4 H 1.48496 * 109.47285 * 269.99949 * 3 2 1 5 5 H 1.48504 * 109.47065 * 30.00086 * 3 2 1 6 6 H 1.48498 * 109.47203 * 149.99749 * 3 2 1 7 7 C 1.37879 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47213 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47036 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99695 * 180.02562 * 11 10 9 13 13 O 1.21351 * 120.00508 * 359.97438 * 12 11 10 14 14 C 1.49456 * 119.99780 * 179.97438 * 12 11 10 15 15 O 1.21344 * 120.00066 * 0.02562 * 14 12 11 16 16 N 1.34778 * 119.99780 * 179.97438 * 14 12 11 17 17 C 1.46498 * 120.00066 * 180.02562 * 16 14 12 18 18 C 1.52998 * 109.47407 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47326 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47121 * 179.97438 * 19 18 17 21 21 N 1.30110 * 124.95422 * 304.97979 * 20 19 18 22 22 C 1.35787 * 109.64483 * 180.02562 * 21 20 19 23 23 C 1.39735 * 133.60090 * 179.97438 * 22 21 20 24 24 C 1.36603 * 119.88474 * 179.72469 * 23 22 21 25 25 C 1.38783 * 120.66827 * 0.28758 * 24 23 22 26 26 C 1.37847 * 120.45027 * 359.96769 * 25 24 23 27 27 C 1.38834 * 119.69200 * 0.03175 * 26 25 24 28 28 N 1.36051 * 124.94724 * 125.59800 * 20 19 18 29 29 H 0.97004 * 126.34652 * 359.39556 * 28 20 19 30 30 H 0.96997 * 119.99884 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.46963 * 60.00212 * 9 7 2 32 32 H 1.08999 * 109.47133 * 300.00707 * 9 7 2 33 33 H 1.09009 * 109.46599 * 60.00303 * 10 9 7 34 34 H 1.08999 * 109.47319 * 300.00190 * 10 9 7 35 35 H 0.96998 * 120.00238 * 359.97438 * 11 10 9 36 36 H 0.96998 * 120.00066 * 359.97438 * 16 14 12 37 37 H 1.09008 * 109.47228 * 59.99493 * 17 16 14 38 38 H 1.08999 * 109.46947 * 300.00082 * 17 16 14 39 39 H 1.08996 * 109.46814 * 59.99928 * 18 17 16 40 40 H 1.08999 * 109.47319 * 300.00080 * 18 17 16 41 41 H 1.09003 * 109.46475 * 60.00111 * 19 18 17 42 42 H 1.08999 * 109.47127 * 300.00368 * 19 18 17 43 43 H 1.08002 * 120.06112 * 0.02562 * 23 22 21 44 44 H 1.07994 * 119.66831 * 180.30197 * 24 23 22 45 45 H 1.08003 * 119.77014 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.15211 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1604 -3.8037 -0.0003 13 8 5.5537 -4.8547 -0.0002 14 6 7.6549 -3.8037 -0.0008 15 8 8.2617 -2.7528 -0.0004 16 7 8.3288 -4.9709 -0.0007 17 6 9.7938 -4.9709 -0.0007 18 6 10.3038 -6.4134 0.0001 19 6 11.8338 -6.4134 -0.0005 20 6 12.3361 -7.8342 0.0009 21 7 12.0085 -8.7398 0.8758 22 6 12.6392 -9.9063 0.5834 23 6 12.6488 -11.1715 1.1765 24 6 13.4009 -12.1731 0.6313 25 6 14.1635 -11.9468 -0.5060 26 6 14.1735 -10.7052 -1.1048 27 6 13.4153 -9.6752 -0.5648 28 7 13.2076 -8.3536 -0.9056 29 1 13.6015 -7.8852 -1.6582 30 1 -0.4850 0.8400 0.0004 31 1 3.8752 -0.6797 0.8895 32 1 3.8745 -0.6807 -0.8904 33 1 3.6579 -3.1505 -0.8898 34 1 3.6586 -3.1502 0.8903 35 1 5.9715 -1.7965 -0.0003 36 1 7.8438 -5.8109 0.0001 37 1 10.1571 -4.4570 0.8893 38 1 10.1571 -4.4572 -0.8907 39 1 9.9405 -6.9277 -0.8896 40 1 9.9405 -6.9268 0.8903 41 1 12.1974 -5.8990 0.8891 42 1 12.1968 -5.9002 -0.8909 43 1 12.0589 -11.3587 2.0616 44 1 13.4020 -13.1509 1.0896 45 1 14.7525 -12.7492 -0.9251 46 1 14.7684 -10.5346 -1.9899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340575641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:41 Heat of formation + Delta-G solvation = -16.300397 kcal Electronic energy + Delta-G solvation = -27081.224064 eV Core-core repulsion = 22970.867492 eV Total energy + Delta-G solvation = -4110.356572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62089 -40.49314 -38.47593 -37.95036 -36.32265 -35.20565 -33.70119 -33.41142 -32.78116 -30.47396 -30.29739 -29.80864 -27.43500 -25.67752 -23.72465 -22.88038 -22.50372 -22.21768 -21.14820 -20.87896 -20.13949 -18.36080 -18.28758 -17.70097 -17.07903 -16.63464 -16.37028 -16.04033 -15.82124 -15.36549 -15.30520 -14.84746 -14.77538 -14.42078 -14.27986 -14.18111 -13.85716 -13.50743 -13.34060 -13.04533 -12.83312 -12.61679 -12.42244 -12.12413 -12.00777 -11.97925 -11.60563 -11.49773 -11.46221 -11.24990 -11.14499 -10.44578 -10.41677 -10.30853 -9.96224 -9.47850 -9.44226 -9.31489 -8.85973 -8.77587 -8.61385 -8.59255 -6.12480 -4.13224 0.46992 1.04653 1.53200 2.21246 2.32633 2.51444 3.26351 3.34443 3.34992 3.36295 3.41890 3.55581 3.78437 4.01545 4.32804 4.37646 4.43370 4.53210 4.56301 4.63663 4.72423 4.82796 4.89047 4.98075 5.01559 5.06407 5.20704 5.21970 5.29125 5.55147 5.60819 5.68441 5.91381 5.96780 6.02254 6.05178 6.05774 6.10394 6.40041 6.47110 6.51030 6.79932 6.92564 7.08953 7.18375 7.40973 7.54942 7.62477 7.83783 8.20707 8.41750 8.90905 9.47510 11.00321 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.034041 B = 0.001306 C = 0.001273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.335351 B =21441.796620 C =21984.823180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.691 5.691 12 C 0.498 3.502 13 O -0.528 6.528 14 C 0.509 3.491 15 O -0.522 6.522 16 N -0.705 5.705 17 C 0.118 3.882 18 C -0.125 4.125 19 C -0.037 4.037 20 C 0.288 3.712 21 N -0.486 5.486 22 C 0.048 3.952 23 C -0.064 4.064 24 C -0.128 4.128 25 C -0.102 4.102 26 C -0.113 4.113 27 C 0.044 3.956 28 N -0.599 5.599 29 H 0.423 0.577 30 H 0.265 0.735 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.005 -20.701 -2.300 39.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.342 5.342 12 C 0.277 3.723 13 O -0.406 6.406 14 C 0.290 3.710 15 O -0.397 6.397 16 N -0.359 5.359 17 C -0.005 4.005 18 C -0.164 4.164 19 C -0.077 4.077 20 C 0.021 3.979 21 N -0.206 5.206 22 C -0.071 4.071 23 C -0.083 4.083 24 C -0.149 4.149 25 C -0.122 4.122 26 C -0.134 4.134 27 C -0.065 4.065 28 N -0.210 5.210 29 H 0.262 0.738 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.244 0.756 36 H 0.251 0.749 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 33.260 -20.493 -1.557 39.097 hybrid contribution 1.139 1.019 -1.148 1.911 sum 34.398 -19.474 -2.704 39.620 Atomic orbital electron populations 1.69899 1.06297 1.27122 1.50238 1.24979 0.94752 0.99147 0.94238 0.86769 0.80352 0.83507 0.78601 1.20174 1.21213 1.18951 1.20882 0.88450 0.94968 1.51995 0.90531 1.19824 0.98102 0.90984 0.97232 1.21719 0.74721 1.00839 1.02198 1.46204 1.09519 1.08017 1.70440 1.19958 0.87687 0.85253 0.79357 1.90753 1.69661 1.30997 1.49170 1.20421 0.89034 0.84211 0.77344 1.90751 1.70087 1.31066 1.47829 1.45706 1.07245 1.09224 1.73756 1.21416 0.79228 0.96747 1.03146 1.21715 0.93551 0.96297 1.04833 1.20071 0.95963 0.86747 1.04923 1.23525 0.90638 0.96977 0.86728 1.70408 1.25644 0.99057 1.25507 1.19115 0.98495 0.94105 0.95346 1.20082 0.98976 0.89550 0.99711 1.20687 0.98046 0.99188 0.96952 1.20916 0.99346 0.95951 0.95979 1.19974 1.00764 0.91441 1.01173 1.18905 1.02817 0.85525 0.99281 1.43092 1.40616 1.09585 1.27733 0.73847 0.92502 0.95698 0.96169 0.91253 0.91208 0.75575 0.74915 0.90555 0.90855 0.90680 0.89159 0.87820 0.89292 0.85206 0.85241 0.85213 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.54 4.16 -27.88 -0.12 -0.65 16 10 C 0.13 2.53 5.61 -4.05 -0.02 2.50 16 11 N -0.69 -11.76 5.55 -60.73 -0.34 -12.10 16 12 C 0.50 8.11 7.89 -11.58 -0.09 8.02 16 13 O -0.53 -9.66 16.48 5.50 0.09 -9.57 16 14 C 0.51 7.03 7.89 -11.58 -0.09 6.94 16 15 O -0.52 -8.11 16.48 5.50 0.09 -8.02 16 16 N -0.71 -7.23 5.55 -60.73 -0.34 -7.57 16 17 C 0.12 0.85 5.67 -4.04 -0.02 0.83 16 18 C -0.13 -0.70 5.27 -26.73 -0.14 -0.84 16 19 C -0.04 -0.16 5.84 -27.88 -0.16 -0.32 16 20 C 0.29 2.09 7.37 -154.81 -1.14 0.95 16 21 N -0.49 -4.98 11.21 -8.23 -0.09 -5.07 16 22 C 0.05 0.47 7.23 -84.70 -0.61 -0.14 16 23 C -0.06 -0.52 10.05 -39.61 -0.40 -0.92 16 24 C -0.13 -0.78 9.96 -39.97 -0.40 -1.18 16 25 C -0.10 -0.56 10.03 -39.52 -0.40 -0.96 16 26 C -0.11 -0.69 10.07 -39.50 -0.40 -1.09 16 27 C 0.04 0.36 7.30 -83.99 -0.61 -0.26 16 28 N -0.60 -3.55 6.23 -8.00 -0.05 -3.60 16 29 H 0.42 1.07 8.96 -40.82 -0.37 0.70 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 32 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 33 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.41 6.43 7.94 -40.82 -0.32 6.11 16 36 H 0.41 3.93 7.94 -40.82 -0.32 3.61 16 37 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 45 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 46 H 0.12 0.47 8.06 -52.49 -0.42 0.04 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -35.78 396.44 -10.03 -45.82 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.44 Total: 4.17 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -5.04 Total: -0.06 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.04 Total: -54.72 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.78 -10.03 -45.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340575641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.516 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds