Wall clock time and date at job start Wed Apr 1 2020 02:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48502 * 109.47250 * 270.00163 * 3 2 1 5 5 H 1.48501 * 109.47514 * 149.99988 * 3 2 1 6 6 H 1.48508 * 109.47225 * 29.99846 * 3 2 1 7 7 C 1.37875 * 120.00731 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00535 * 175.65418 * 7 2 1 9 9 C 1.50700 * 119.99434 * 355.64715 * 7 2 1 10 10 C 1.53009 * 115.55362 * 275.29893 * 9 7 2 11 11 N 1.46897 * 109.46619 * 305.16390 * 10 9 7 12 12 C 1.46962 * 111.00113 * 296.82871 * 11 10 9 13 13 C 1.53053 * 109.36597 * 176.81397 * 12 11 10 14 14 N 1.46958 * 109.36403 * 58.40019 * 13 12 11 15 15 C 1.46901 * 111.00092 * 176.81144 * 14 13 12 16 16 H 1.08994 * 109.64385 * 181.41088 * 15 14 13 17 17 C 1.54161 * 109.64237 * 60.97673 * 15 14 13 18 18 S 1.82920 * 105.08410 * 212.23893 * 17 15 14 19 19 O 1.42099 * 109.35390 * 115.52652 * 18 17 15 20 20 O 1.42103 * 109.35526 * 248.59575 * 18 17 15 21 21 C 1.83289 * 97.01849 * 2.12550 * 18 17 15 22 22 C 1.53882 * 109.64393 * 301.70298 * 15 14 13 23 23 H 1.09000 * 110.02652 * 47.74427 * 22 15 14 24 24 O 1.42903 * 110.02883 * 286.32332 * 22 15 14 25 25 C 1.46952 * 110.88404 * 300.68346 * 14 13 12 26 26 C 1.46953 * 110.99826 * 173.03323 * 11 10 9 27 27 C 1.52998 * 117.49823 * 129.62877 * 9 7 2 28 28 C 1.52998 * 117.50050 * 60.96653 * 9 7 2 29 29 H 0.96994 * 119.99375 * 185.31754 * 1 2 3 30 30 H 1.08999 * 109.47072 * 65.15703 * 10 9 7 31 31 H 1.08998 * 109.47275 * 185.16331 * 10 9 7 32 32 H 1.08997 * 109.48869 * 296.78575 * 12 11 10 33 33 H 1.09001 * 109.48513 * 56.85026 * 12 11 10 34 34 H 1.09002 * 109.48730 * 298.43571 * 13 12 11 35 35 H 1.09000 * 109.48794 * 178.37245 * 13 12 11 36 36 H 1.08991 * 110.32668 * 331.14242 * 17 15 14 37 37 H 1.09005 * 110.31924 * 93.34116 * 17 15 14 38 38 H 1.09001 * 110.78945 * 141.47858 * 21 18 17 39 39 H 1.09000 * 110.79001 * 264.75305 * 21 18 17 40 40 H 0.96694 * 113.99586 * 179.97438 * 24 22 15 41 41 H 1.09003 * 109.48457 * 299.35245 * 25 14 13 42 42 H 1.08996 * 109.49489 * 179.28657 * 25 14 13 43 43 H 1.09000 * 109.49066 * 303.15355 * 26 11 10 44 44 H 1.09002 * 109.49065 * 63.22053 * 26 11 10 45 45 H 1.09000 * 117.50003 * 0.02562 * 27 9 7 46 46 H 1.09002 * 117.50123 * 145.02109 * 27 9 7 47 47 H 1.09003 * 117.50526 * 214.97855 * 28 9 7 48 48 H 1.08999 * 117.50021 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 3.5467 1.4403 0.7000 6 1 1.4465 2.6528 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 3.0823 -1.1952 -0.0714 9 6 1.2545 -2.4972 0.0979 10 6 0.9060 -2.9526 1.5165 11 7 2.1297 -3.0078 2.3274 12 6 3.0684 -4.0064 1.7970 13 6 4.3589 -3.9770 2.6195 14 7 4.0447 -4.2500 4.0289 15 6 5.2684 -4.3052 4.8399 16 1 5.0123 -4.5332 5.8745 17 6 5.9961 -2.9478 4.7730 18 16 7.7750 -3.3546 4.8997 19 8 8.4283 -2.9917 3.6911 20 8 8.2776 -2.8870 6.1439 21 6 7.5841 -5.1764 4.9637 22 6 6.2050 -5.3950 4.2895 23 1 6.2983 -5.2958 3.2080 24 8 5.6979 -6.6893 4.6208 25 6 3.1060 -3.2515 4.5593 26 6 1.8155 -3.2809 3.7368 27 6 1.5827 -3.5808 -0.9312 28 6 0.2552 -2.8230 -1.0139 29 1 -0.4849 -0.8364 0.0779 30 1 0.2058 -2.2466 1.9630 31 1 0.4502 -3.9420 1.4788 32 1 2.6192 -4.9975 1.8604 33 1 3.2952 -3.7754 0.7562 34 1 4.8222 -2.9941 2.5340 35 1 5.0454 -4.7368 2.2461 36 1 5.7877 -2.4529 3.8246 37 1 5.6925 -2.3141 5.6063 38 1 8.3742 -5.6684 4.3965 39 1 7.5738 -5.5284 5.9952 40 1 6.2448 -7.4197 4.3007 41 1 3.5552 -2.2604 4.4958 42 1 2.8791 -3.4824 5.6001 43 1 1.1290 -2.5211 4.1102 44 1 1.3522 -4.2638 3.8222 45 1 2.3415 -3.3511 -1.6792 46 1 1.5500 -4.6180 -0.5978 47 1 -0.6502 -3.3620 -0.7350 48 1 0.1401 -2.0944 -1.8164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364375413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:00 Heat of formation + Delta-G solvation = -61.169916 kcal Electronic energy + Delta-G solvation = -30075.243942 eV Core-core repulsion = 26066.092881 eV Total energy + Delta-G solvation = -4009.151060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.03214 -38.12436 -37.38130 -36.80263 -36.36351 -35.00108 -32.46745 -31.73484 -30.75425 -29.61619 -27.48719 -25.32251 -24.64849 -23.85554 -23.01199 -21.25328 -21.00261 -19.54873 -19.24485 -19.01199 -18.09928 -17.33366 -16.67410 -16.53334 -16.08256 -15.94282 -15.32112 -14.75878 -14.60866 -14.55731 -14.18782 -13.96498 -13.79452 -13.68230 -13.55920 -13.35776 -12.98266 -12.57042 -12.54444 -12.45544 -12.36353 -12.20330 -11.95223 -11.58649 -11.47953 -11.22211 -11.07079 -10.90871 -10.81857 -10.70281 -10.65864 -10.47344 -10.41182 -10.27568 -10.07162 -9.35663 -8.59968 -8.45304 -8.37994 -8.12795 -7.56426 -6.22501 -3.93992 -0.39328 2.11693 3.11794 3.37918 3.47353 3.51593 3.52308 3.66577 3.79043 3.99796 4.24650 4.32692 4.41144 4.49199 4.52001 4.59371 4.86995 5.03079 5.09975 5.17343 5.23385 5.30701 5.33050 5.44429 5.50754 5.55263 5.71882 5.72494 5.91351 6.00105 6.07877 6.14115 6.23963 6.31217 6.34193 6.40012 6.54897 6.69764 6.84297 6.88259 6.95211 7.16579 7.26735 7.29127 7.72018 7.83791 8.37807 8.53344 8.99281 9.77461 11.16549 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.003481 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.505017 B = 8042.428532 C = 9087.017492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 1.067 2.933 4 H -0.291 1.291 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.031 3.969 10 C 0.102 3.898 11 N -0.510 5.510 12 C 0.065 3.935 13 C 0.041 3.959 14 N -0.512 5.512 15 C 0.100 3.900 16 H 0.111 0.889 17 C -0.636 4.636 18 S 2.399 3.601 19 O -0.929 6.929 20 O -0.935 6.935 21 C -0.635 4.635 22 C 0.118 3.882 23 H 0.087 0.913 24 O -0.533 6.533 25 C 0.057 3.943 26 C 0.056 3.944 27 C -0.202 4.202 28 C -0.181 4.181 29 H 0.273 0.727 30 H 0.068 0.932 31 H 0.003 0.997 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.382 0.618 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.031 0.969 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.892 -12.728 11.209 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.896 3.104 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.030 3.970 10 C -0.026 4.026 11 N -0.234 5.234 12 C -0.064 4.064 13 C -0.086 4.086 14 N -0.236 5.236 15 C -0.011 4.011 16 H 0.129 0.871 17 C -0.767 4.767 18 S 2.580 3.420 19 O -0.926 6.926 20 O -0.932 6.932 21 C -0.764 4.764 22 C 0.057 3.943 23 H 0.105 0.895 24 O -0.337 6.337 25 C -0.071 4.071 26 C -0.073 4.073 27 C -0.239 4.239 28 C -0.219 4.219 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.021 0.979 32 H 0.046 0.954 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.229 0.771 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.004 -10.137 11.452 19.442 hybrid contribution -0.077 -2.534 -0.191 2.542 sum 11.926 -12.671 11.261 20.727 Atomic orbital electron populations 1.70706 1.06786 1.31382 1.46371 1.25619 0.96543 1.01972 0.93776 0.83583 0.74811 0.75508 0.76493 1.21845 1.21557 1.21313 1.21070 0.93496 0.89238 1.54030 0.93176 1.19107 0.97746 0.94584 0.85524 1.21698 0.89517 0.96250 0.95131 1.61939 1.14350 1.46851 1.00284 1.22102 0.91766 0.93063 0.99452 1.22477 0.98620 1.00129 0.87389 1.62333 1.10255 1.48700 1.02292 1.22042 0.90419 0.87818 1.00808 0.87055 1.31273 1.23786 1.07848 1.13797 1.08755 0.78754 0.79013 0.75456 1.93654 1.71904 1.80839 1.46183 1.93624 1.77581 1.78288 1.43658 1.31462 1.06744 1.26705 1.11520 1.22438 0.87304 0.86082 0.98522 0.89498 1.86585 1.52655 1.13741 1.80757 1.22222 0.93000 0.93733 0.98104 1.22123 0.95673 0.99500 0.90006 1.22940 0.99697 0.95412 1.05875 1.22789 0.91490 1.02858 1.04739 0.91532 0.91392 0.97931 0.95424 0.88754 0.92943 0.90550 0.83062 0.83344 0.84069 0.83451 0.77080 0.93080 0.90593 0.90477 0.95036 0.90294 0.91926 0.91883 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 13.50 55.43 0.75 -25.81 16 2 C 0.03 0.69 5.43 -17.82 -0.10 0.59 16 3 Si 1.07 25.06 29.91 -169.99 -5.08 19.98 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.54 -14.31 8.52 -34.44 -0.29 -14.60 16 8 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 9 C 0.03 0.73 0.56 -155.66 -0.09 0.64 16 10 C 0.10 2.15 4.88 -3.82 -0.02 2.13 16 11 N -0.51 -9.57 4.42 -234.46 -1.04 -10.61 16 12 C 0.06 1.08 5.21 -3.76 -0.02 1.06 16 13 C 0.04 0.56 4.97 -3.76 -0.02 0.54 16 14 N -0.51 -6.24 4.73 -225.21 -1.06 -7.30 16 15 C 0.10 0.92 2.36 -66.65 -0.16 0.76 16 16 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.64 -5.45 5.46 37.76 0.21 -5.25 16 18 S 2.40 20.80 6.10 -107.50 -0.66 20.14 16 19 O -0.93 -11.55 18.15 -57.73 -1.05 -12.60 16 20 O -0.93 -11.04 18.15 -57.73 -1.05 -12.09 16 21 C -0.63 -3.58 7.00 38.24 0.27 -3.31 16 22 C 0.12 0.90 3.24 -25.19 -0.08 0.82 16 23 H 0.09 0.64 5.80 -51.93 -0.30 0.34 16 24 O -0.53 -4.29 13.38 -35.23 -0.47 -4.76 16 25 C 0.06 0.74 5.31 -3.77 -0.02 0.72 16 26 C 0.06 0.87 5.62 -3.77 -0.02 0.85 16 27 C -0.20 -4.21 8.16 -26.69 -0.22 -4.43 16 28 C -0.18 -4.08 8.29 -26.69 -0.22 -4.30 16 29 H 0.27 7.81 6.23 -40.82 -0.25 7.56 16 30 H 0.07 1.56 8.08 -51.93 -0.42 1.14 16 31 H 0.00 0.05 8.09 -51.93 -0.42 -0.37 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 1.75 5.89 -51.93 -0.31 1.44 16 34 H 0.05 0.75 6.07 -51.93 -0.32 0.44 16 35 H 0.08 0.87 5.88 -51.93 -0.31 0.57 16 36 H 0.15 1.49 5.69 -51.93 -0.30 1.20 16 37 H 0.15 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.15 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.38 1.42 9.11 45.56 0.42 1.84 16 41 H 0.05 0.68 7.27 -51.93 -0.38 0.31 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -35.61 378.25 -11.60 -47.20 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.86 Total: 3.93 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -0.78 Total: -23.78 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -1.35 Total: -43.72 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -2.57 Total: -29.45 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.98 kcal Atomic # 16 Polarization: 20.80 SS G_CDS: -0.66 Total: 20.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.61 -11.60 -47.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364375413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.967 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds