Wall clock time and date at job start Wed Apr 1 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48503 * 109.46741 * 274.99282 * 3 2 1 5 5 H 1.48502 * 109.47087 * 34.98941 * 3 2 1 6 6 H 1.48500 * 109.47372 * 154.99614 * 3 2 1 7 7 C 1.37877 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00189 * 171.48972 * 7 2 1 9 9 C 1.50706 * 119.99851 * 351.49453 * 7 2 1 10 10 C 1.52992 * 115.55195 * 324.26768 * 9 7 2 11 11 N 1.46905 * 109.47037 * 306.00595 * 10 9 7 12 12 C 1.46954 * 111.00031 * 182.50964 * 11 10 9 13 13 C 1.53057 * 109.36279 * 183.18721 * 12 11 10 14 14 N 1.46955 * 109.36246 * 301.59430 * 13 12 11 15 15 C 1.46899 * 111.00099 * 183.19127 * 14 13 12 16 16 H 1.09006 * 109.54781 * 300.38602 * 15 14 13 17 17 C 1.55101 * 109.65432 * 60.76228 * 15 14 13 18 18 S 1.83844 * 101.18795 * 161.71629 * 17 15 14 19 19 O 1.42107 * 109.61160 * 211.05225 * 18 17 15 20 20 O 1.42095 * 109.61317 * 77.09814 * 18 17 15 21 21 C 1.83239 * 95.32342 * 324.07512 * 18 17 15 22 22 C 1.52971 * 109.65673 * 180.02562 * 15 14 13 23 23 H 1.09002 * 108.82546 * 89.55980 * 22 15 14 24 24 O 1.42908 * 108.92830 * 330.96408 * 22 15 14 25 25 C 1.46959 * 110.88190 * 59.32074 * 14 13 12 26 26 C 1.46965 * 110.99606 * 306.30430 * 11 10 9 27 27 C 1.53007 * 117.49670 * 109.93335 * 9 7 2 28 28 C 1.52998 * 117.49987 * 178.59088 * 9 7 2 29 29 H 0.96991 * 120.00529 * 5.00839 * 1 2 3 30 30 H 1.08998 * 109.47305 * 186.00343 * 10 9 7 31 31 H 1.08998 * 109.47562 * 65.99940 * 10 9 7 32 32 H 1.09001 * 109.49053 * 63.21793 * 12 11 10 33 33 H 1.09004 * 109.50536 * 303.16067 * 12 11 10 34 34 H 1.08998 * 109.48648 * 181.62813 * 13 12 11 35 35 H 1.08995 * 109.50619 * 61.57205 * 13 12 11 36 36 H 1.09004 * 111.07248 * 43.73787 * 17 15 14 37 37 H 1.09000 * 111.11419 * 279.71529 * 17 15 14 38 38 H 1.09000 * 110.26833 * 261.34327 * 21 18 17 39 39 H 1.08993 * 110.26898 * 139.27189 * 21 18 17 40 40 H 0.96702 * 113.99821 * 175.78172 * 24 22 15 41 41 H 1.09001 * 109.48540 * 60.64525 * 25 14 13 42 42 H 1.08994 * 109.48851 * 180.70990 * 25 14 13 43 43 H 1.08998 * 109.49001 * 296.77834 * 26 11 10 44 44 H 1.08995 * 109.48534 * 56.84727 * 26 11 10 45 45 H 1.08994 * 117.49740 * 215.00582 * 27 9 7 46 46 H 1.09000 * 117.49877 * 0.02562 * 27 9 7 47 47 H 1.09002 * 117.49631 * 359.97438 * 28 9 7 48 48 H 1.08998 * 117.50168 * 144.97214 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5032 2.6199 0.8028 6 1 3.5955 1.4121 0.5918 7 6 2.0046 -1.1940 0.0005 8 1 3.0756 -1.1992 -0.1379 9 6 1.2635 -2.4919 0.1942 10 6 0.0773 -2.4369 1.1587 11 7 0.5196 -1.8894 2.4482 12 6 -0.5820 -1.8770 3.4208 13 6 -0.1031 -1.2281 4.7216 14 7 1.0486 -1.9765 5.2442 15 6 1.4910 -1.4291 6.5337 16 1 1.7748 -0.3841 6.4082 17 6 0.3404 -1.5364 7.5683 18 16 1.2629 -1.3530 9.1479 19 8 0.6099 -2.0932 10.1703 20 8 1.5904 0.0144 9.3531 21 6 2.7495 -2.2635 8.5833 22 6 2.6890 -2.2289 7.0484 23 1 3.6043 -1.7753 6.6681 24 8 2.5977 -3.5680 6.5578 25 6 2.1502 -1.9891 4.2716 26 6 1.6713 -2.6379 2.9708 27 6 1.1513 -3.4279 -1.0110 28 6 2.0804 -3.7849 0.1519 29 1 -0.4850 0.8367 -0.0733 30 1 -0.3174 -3.4421 1.3070 31 1 -0.7014 -1.7988 0.7411 32 1 -0.9021 -2.8995 3.6208 33 1 -1.4182 -1.3066 3.0163 34 1 -0.9099 -1.2438 5.4543 35 1 0.1914 -0.1968 4.5270 36 1 -0.1491 -2.5086 7.5106 37 1 -0.3803 -0.7289 7.4391 38 1 2.7195 -3.2933 8.9394 39 1 3.6532 -1.7671 8.9366 40 1 3.3554 -4.1234 6.7872 41 1 2.4703 -0.9665 4.0716 42 1 2.9861 -2.5596 4.6763 43 1 1.3768 -3.6691 3.1658 44 1 2.4781 -2.6221 2.2381 45 1 0.2323 -4.0044 -1.1166 46 1 1.6137 -3.1051 -1.9438 47 1 3.1537 -3.6968 -0.0164 48 1 1.7730 -4.5963 0.8117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364375418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:06 Heat of formation + Delta-G solvation = -49.936177 kcal Electronic energy + Delta-G solvation = -30264.387471 eV Core-core repulsion = 26255.723543 eV Total energy + Delta-G solvation = -4008.663929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.69062 -37.93921 -37.35194 -36.42196 -36.30740 -34.47864 -32.35802 -31.99025 -30.51872 -29.53413 -27.11366 -25.55490 -24.90148 -23.10397 -22.67377 -21.07681 -20.67238 -19.34829 -19.19907 -18.83950 -17.98087 -17.26345 -16.20916 -16.15249 -16.08987 -15.45183 -15.15695 -14.77581 -14.62998 -14.26803 -14.16052 -14.02300 -13.87135 -13.52149 -13.34143 -12.85246 -12.84562 -12.59342 -12.44424 -12.34391 -12.06871 -11.74076 -11.47225 -11.46299 -11.25737 -11.11472 -10.93432 -10.83002 -10.73752 -10.55142 -10.42576 -10.31678 -10.24028 -10.07475 -9.92043 -9.23806 -8.94866 -8.58254 -8.14703 -7.97338 -7.12615 -5.88475 -3.92882 -0.29216 2.12754 3.22540 3.31990 3.40234 3.43151 3.53070 3.72136 3.85833 4.13325 4.27746 4.42171 4.46020 4.62497 4.78368 4.82049 5.08525 5.18218 5.20850 5.24354 5.36848 5.58996 5.61849 5.65199 5.77891 5.85826 5.97217 6.07134 6.19465 6.25728 6.36626 6.43437 6.58539 6.62993 6.69403 6.76488 6.84878 6.97078 7.10125 7.16631 7.30859 7.37395 7.40537 7.65146 8.05567 8.21101 8.27540 8.56609 9.00863 9.67537 11.12498 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.003287 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.486739 B = 8515.119259 C = 9108.884776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.092 3.908 3 Si 0.888 3.112 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.480 4.480 8 H 0.053 0.947 9 C 0.066 3.934 10 C 0.106 3.894 11 N -0.499 5.499 12 C 0.062 3.938 13 C 0.055 3.945 14 N -0.503 5.503 15 C 0.086 3.914 16 H 0.076 0.924 17 C -0.568 4.568 18 S 2.388 3.612 19 O -0.937 6.937 20 O -0.932 6.932 21 C -0.626 4.626 22 C 0.123 3.877 23 H 0.077 0.923 24 O -0.527 6.527 25 C 0.057 3.943 26 C 0.065 3.935 27 C -0.207 4.207 28 C -0.219 4.219 29 H 0.257 0.743 30 H -0.017 1.017 31 H 0.116 0.884 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.374 0.626 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.021 0.979 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 -4.758 15.872 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.112 4.112 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.065 3.935 10 C -0.021 4.021 11 N -0.223 5.223 12 C -0.067 4.067 13 C -0.073 4.073 14 N -0.228 5.228 15 C -0.025 4.025 16 H 0.093 0.907 17 C -0.698 4.698 18 S 2.570 3.430 19 O -0.934 6.934 20 O -0.929 6.929 21 C -0.756 4.756 22 C 0.062 3.938 23 H 0.095 0.905 24 O -0.331 6.331 25 C -0.070 4.070 26 C -0.063 4.063 27 C -0.246 4.246 28 C -0.256 4.256 29 H 0.067 0.933 30 H 0.001 0.999 31 H 0.134 0.866 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.220 0.780 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.039 0.961 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.245 -3.942 16.592 17.201 hybrid contribution 1.276 0.197 -0.548 1.403 sum 3.522 -3.745 16.044 16.848 Atomic orbital electron populations 1.69766 1.05949 1.26062 1.48957 1.24712 0.94501 0.98306 0.93647 0.86671 0.80065 0.84089 0.77534 1.21265 1.21302 1.20085 1.20268 0.92810 0.88909 1.49736 0.92887 1.18955 0.93538 0.88484 0.92506 1.21749 0.98945 0.93974 0.87455 1.61958 1.04763 1.53475 1.02079 1.22011 0.94978 0.98352 0.91330 1.22273 0.92735 0.96010 0.96279 1.62200 1.07661 1.52089 1.00877 1.22098 0.90596 0.97143 0.92664 0.90663 1.30734 1.09225 1.12762 1.17084 1.09095 0.79431 0.76170 0.78264 1.93621 1.72703 1.73275 1.53756 1.93646 1.83177 1.31025 1.85095 1.31173 1.21369 1.16250 1.06765 1.21752 0.98649 0.86117 0.87320 0.90513 1.86851 1.47443 1.20623 1.78168 1.22332 0.92816 0.99892 0.91990 1.22112 0.96177 0.93785 0.94261 1.22984 0.99376 1.07694 0.94508 1.22980 0.96803 1.02393 1.03441 0.93312 0.99882 0.86622 0.95699 0.90712 0.91045 0.93918 0.83061 0.84399 0.83400 0.84311 0.77963 0.94392 0.90207 0.96107 0.88659 0.92044 0.90528 0.90919 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.10 10.69 55.43 0.59 -22.51 16 2 C 0.09 2.40 5.19 -17.82 -0.09 2.31 16 3 Si 0.89 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.48 -12.49 8.30 -34.44 -0.29 -12.77 16 8 H 0.05 1.40 7.83 -52.49 -0.41 0.99 16 9 C 0.07 1.56 1.08 -155.66 -0.17 1.39 16 10 C 0.11 2.40 4.18 -3.83 -0.02 2.38 16 11 N -0.50 -10.30 4.39 -234.46 -1.03 -11.33 16 12 C 0.06 1.11 5.62 -3.77 -0.02 1.09 16 13 C 0.05 0.82 5.40 -3.76 -0.02 0.80 16 14 N -0.50 -7.00 4.00 -225.18 -0.90 -7.90 16 15 C 0.09 0.91 2.21 -66.62 -0.15 0.77 16 16 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.57 -4.96 5.86 38.27 0.22 -4.73 16 18 S 2.39 20.58 6.05 -107.50 -0.65 19.93 16 19 O -0.94 -11.16 18.16 -57.67 -1.05 -12.21 16 20 O -0.93 -11.11 18.16 -57.67 -1.05 -12.16 16 21 C -0.63 -3.74 7.08 37.49 0.27 -3.48 16 22 C 0.12 1.01 2.82 -26.41 -0.07 0.94 16 23 H 0.08 0.56 7.99 -51.93 -0.41 0.15 16 24 O -0.53 -4.81 10.76 -35.23 -0.38 -5.18 16 25 C 0.06 0.89 5.10 -3.77 -0.02 0.87 16 26 C 0.07 1.22 4.88 -3.76 -0.02 1.21 16 27 C -0.21 -4.62 9.96 -26.69 -0.27 -4.89 16 28 C -0.22 -4.62 8.22 -26.69 -0.22 -4.84 16 29 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 30 H -0.02 -0.37 8.09 -51.93 -0.42 -0.79 16 31 H 0.12 2.92 6.00 -51.93 -0.31 2.61 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.07 0.89 6.69 -51.93 -0.35 0.54 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.15 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.14 1.04 7.61 -51.93 -0.40 0.64 16 38 H 0.15 0.68 7.92 -51.93 -0.41 0.27 16 39 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.37 1.82 9.09 45.56 0.41 2.23 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.08 5.77 -51.93 -0.30 0.78 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 1.97 5.55 -51.93 -0.29 1.68 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 47 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -33.52 377.53 -11.75 -45.27 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.09 Total: 3.62 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.86 Total: -18.95 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -1.34 Total: -41.74 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -2.47 Total: -29.55 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 20.58 SS G_CDS: -0.65 Total: 19.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.52 -11.75 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364375418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.667 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds