Wall clock time and date at job start Wed Apr 1 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48503 * 109.46741 * 274.99282 * 3 2 1 5 5 H 1.48502 * 109.47087 * 34.98941 * 3 2 1 6 6 H 1.48500 * 109.47372 * 154.99614 * 3 2 1 7 7 C 1.37877 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00189 * 171.48972 * 7 2 1 9 9 C 1.50706 * 119.99851 * 351.49453 * 7 2 1 10 10 C 1.52992 * 115.55195 * 324.26768 * 9 7 2 11 11 N 1.46905 * 109.47037 * 306.00595 * 10 9 7 12 12 C 1.46954 * 111.00031 * 182.50964 * 11 10 9 13 13 C 1.53057 * 109.36279 * 183.18721 * 12 11 10 14 14 N 1.46955 * 109.36246 * 301.59430 * 13 12 11 15 15 C 1.46899 * 111.00099 * 183.19127 * 14 13 12 16 16 H 1.09006 * 109.54781 * 300.38602 * 15 14 13 17 17 C 1.55101 * 109.65432 * 60.76228 * 15 14 13 18 18 S 1.83844 * 101.18795 * 161.71629 * 17 15 14 19 19 O 1.42107 * 109.61160 * 211.05225 * 18 17 15 20 20 O 1.42095 * 109.61317 * 77.09814 * 18 17 15 21 21 C 1.83239 * 95.32342 * 324.07512 * 18 17 15 22 22 C 1.52971 * 109.65673 * 180.02562 * 15 14 13 23 23 H 1.09002 * 108.82546 * 89.55980 * 22 15 14 24 24 O 1.42908 * 108.92830 * 330.96408 * 22 15 14 25 25 C 1.46959 * 110.88190 * 59.32074 * 14 13 12 26 26 C 1.46965 * 110.99606 * 306.30430 * 11 10 9 27 27 C 1.53007 * 117.49670 * 109.93335 * 9 7 2 28 28 C 1.52998 * 117.49987 * 178.59088 * 9 7 2 29 29 H 0.96991 * 120.00529 * 5.00839 * 1 2 3 30 30 H 1.08998 * 109.47305 * 186.00343 * 10 9 7 31 31 H 1.08998 * 109.47562 * 65.99940 * 10 9 7 32 32 H 1.09001 * 109.49053 * 63.21793 * 12 11 10 33 33 H 1.09004 * 109.50536 * 303.16067 * 12 11 10 34 34 H 1.08998 * 109.48648 * 181.62813 * 13 12 11 35 35 H 1.08995 * 109.50619 * 61.57205 * 13 12 11 36 36 H 1.09004 * 111.07248 * 43.73787 * 17 15 14 37 37 H 1.09000 * 111.11419 * 279.71529 * 17 15 14 38 38 H 1.09000 * 110.26833 * 261.34327 * 21 18 17 39 39 H 1.08993 * 110.26898 * 139.27189 * 21 18 17 40 40 H 0.96702 * 113.99821 * 175.78172 * 24 22 15 41 41 H 1.09001 * 109.48540 * 60.64525 * 25 14 13 42 42 H 1.08994 * 109.48851 * 180.70990 * 25 14 13 43 43 H 1.08998 * 109.49001 * 296.77834 * 26 11 10 44 44 H 1.08995 * 109.48534 * 56.84727 * 26 11 10 45 45 H 1.08994 * 117.49740 * 215.00582 * 27 9 7 46 46 H 1.09000 * 117.49877 * 0.02562 * 27 9 7 47 47 H 1.09002 * 117.49631 * 359.97438 * 28 9 7 48 48 H 1.08998 * 117.50168 * 144.97214 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5032 2.6199 0.8028 6 1 3.5955 1.4121 0.5918 7 6 2.0046 -1.1940 0.0005 8 1 3.0756 -1.1992 -0.1379 9 6 1.2635 -2.4919 0.1942 10 6 0.0773 -2.4369 1.1587 11 7 0.5196 -1.8894 2.4482 12 6 -0.5820 -1.8770 3.4208 13 6 -0.1031 -1.2281 4.7216 14 7 1.0486 -1.9765 5.2442 15 6 1.4910 -1.4291 6.5337 16 1 1.7748 -0.3841 6.4082 17 6 0.3404 -1.5364 7.5683 18 16 1.2629 -1.3530 9.1479 19 8 0.6099 -2.0932 10.1703 20 8 1.5904 0.0144 9.3531 21 6 2.7495 -2.2635 8.5833 22 6 2.6890 -2.2289 7.0484 23 1 3.6043 -1.7753 6.6681 24 8 2.5977 -3.5680 6.5578 25 6 2.1502 -1.9891 4.2716 26 6 1.6713 -2.6379 2.9708 27 6 1.1513 -3.4279 -1.0110 28 6 2.0804 -3.7849 0.1519 29 1 -0.4850 0.8367 -0.0733 30 1 -0.3174 -3.4421 1.3070 31 1 -0.7014 -1.7988 0.7411 32 1 -0.9021 -2.8995 3.6208 33 1 -1.4182 -1.3066 3.0163 34 1 -0.9099 -1.2438 5.4543 35 1 0.1914 -0.1968 4.5270 36 1 -0.1491 -2.5086 7.5106 37 1 -0.3803 -0.7289 7.4391 38 1 2.7195 -3.2933 8.9394 39 1 3.6532 -1.7671 8.9366 40 1 3.3554 -4.1234 6.7872 41 1 2.4703 -0.9665 4.0716 42 1 2.9861 -2.5596 4.6763 43 1 1.3768 -3.6691 3.1658 44 1 2.4781 -2.6221 2.2381 45 1 0.2323 -4.0044 -1.1166 46 1 1.6137 -3.1051 -1.9438 47 1 3.1537 -3.6968 -0.0164 48 1 1.7730 -4.5963 0.8117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364375418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:06 Heat of formation + Delta-G solvation = -77.758261 kcal Electronic energy + Delta-G solvation = -30265.593928 eV Core-core repulsion = 26255.723543 eV Total energy + Delta-G solvation = -4009.870385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.75128 -39.24320 -38.15512 -37.73435 -37.10867 -35.63411 -34.00347 -33.31234 -31.77743 -30.34371 -28.44180 -27.41785 -25.97643 -24.50390 -23.96043 -22.79105 -21.53185 -20.77051 -20.57442 -19.89840 -18.72333 -18.20575 -17.82911 -16.95000 -16.81471 -16.60967 -16.49553 -16.04954 -15.74729 -15.66460 -15.53118 -15.35229 -15.07719 -14.75782 -14.58835 -14.16807 -13.90852 -13.59651 -13.39784 -13.31662 -13.16381 -13.11898 -12.83739 -12.78462 -12.69301 -12.38865 -12.26165 -12.24253 -12.12114 -12.05076 -11.90149 -11.76318 -11.47833 -11.33285 -11.03918 -10.86560 -10.79367 -10.39907 -9.87060 -9.27078 -8.72203 -7.86278 -5.96241 -0.96311 1.43762 1.48376 1.48436 1.55124 2.51663 2.55898 2.73243 2.98099 3.12916 3.21393 3.40513 3.42051 3.62375 3.76985 3.78481 3.99186 4.08109 4.21611 4.26716 4.33752 4.46085 4.50903 4.53317 4.58466 4.59199 4.64861 4.74345 4.79780 4.85217 4.88427 4.90541 4.97136 5.00114 5.08173 5.16490 5.24677 5.30380 5.47117 5.57626 5.71411 6.03582 6.09457 6.11930 6.46496 6.66921 6.74540 6.98725 7.02795 7.65319 9.11859 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.003287 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.486739 B = 8515.119259 C = 9108.884776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.057 3.943 3 Si 0.936 3.064 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.491 4.491 8 H 0.042 0.958 9 C 0.041 3.959 10 C 0.118 3.882 11 N -0.516 5.516 12 C 0.063 3.937 13 C 0.060 3.940 14 N -0.502 5.502 15 C 0.073 3.927 16 H 0.077 0.923 17 C -0.567 4.567 18 S 2.403 3.597 19 O -0.972 6.972 20 O -0.969 6.969 21 C -0.597 4.597 22 C 0.122 3.878 23 H 0.092 0.908 24 O -0.547 6.547 25 C 0.066 3.934 26 C 0.071 3.929 27 C -0.211 4.211 28 C -0.192 4.192 29 H 0.254 0.746 30 H -0.017 1.017 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.027 0.973 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.393 0.607 41 H 0.020 0.980 42 H 0.105 0.895 43 H 0.018 0.982 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 -5.618 17.522 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.145 4.145 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.041 3.959 10 C -0.010 4.010 11 N -0.240 5.240 12 C -0.066 4.066 13 C -0.068 4.068 14 N -0.227 5.227 15 C -0.038 4.038 16 H 0.095 0.905 17 C -0.697 4.697 18 S 2.589 3.411 19 O -0.969 6.969 20 O -0.966 6.966 21 C -0.729 4.729 22 C 0.061 3.939 23 H 0.110 0.890 24 O -0.354 6.354 25 C -0.062 4.062 26 C -0.057 4.057 27 C -0.250 4.250 28 C -0.229 4.229 29 H 0.064 0.936 30 H 0.001 0.999 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.045 0.955 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.188 0.812 39 H 0.184 0.816 40 H 0.243 0.757 41 H 0.038 0.962 42 H 0.123 0.877 43 H 0.036 0.964 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.651 -4.800 18.267 19.237 hybrid contribution 0.863 0.396 -1.106 1.458 sum 4.515 -4.404 17.162 18.284 Atomic orbital electron populations 1.69900 1.06684 1.26239 1.49662 1.25206 0.95093 1.00444 0.93714 0.85915 0.79102 0.81311 0.77315 1.21131 1.21539 1.19868 1.20419 0.92394 0.90300 1.49748 0.94025 1.19010 0.94637 0.88649 0.93638 1.21447 0.97798 0.93225 0.88499 1.61887 1.06144 1.53935 1.02063 1.22027 0.94056 0.98468 0.92037 1.22213 0.94226 0.94786 0.95591 1.62151 1.06763 1.52208 1.01602 1.22336 0.92416 0.97815 0.91207 0.90494 1.30727 1.09147 1.13412 1.16409 1.08463 0.79920 0.75216 0.77487 1.93574 1.74311 1.73650 1.55401 1.93599 1.83850 1.33486 1.85665 1.31012 1.19912 1.17138 1.04811 1.21742 0.97865 0.85850 0.88479 0.88973 1.86798 1.49048 1.21029 1.78562 1.22217 0.93960 0.98845 0.91176 1.22009 0.94708 0.93746 0.95249 1.22990 1.00237 1.07519 0.94214 1.22907 0.96630 1.01104 1.02282 0.93609 0.99871 0.89552 0.95586 0.91909 0.88330 0.95513 0.82622 0.83583 0.81180 0.81565 0.75674 0.96194 0.87680 0.96414 0.90821 0.91085 0.91252 0.90558 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.97 10.69 21.45 0.23 -47.74 16 2 C 0.06 3.01 5.19 84.65 0.44 3.45 16 3 Si 0.94 42.88 29.55 68.60 2.03 44.90 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.49 -25.80 8.30 25.60 0.21 -25.59 16 8 H 0.04 2.22 7.83 -2.91 -0.02 2.20 16 9 C 0.04 1.96 1.08 -52.93 -0.06 1.90 16 10 C 0.12 5.44 4.18 86.30 0.36 5.80 16 11 N -0.52 -21.46 4.39 -895.71 -3.94 -25.40 16 12 C 0.06 2.23 5.62 86.31 0.49 2.72 16 13 C 0.06 1.74 5.40 86.31 0.47 2.21 16 14 N -0.50 -13.05 4.00 -866.33 -3.47 -16.51 16 15 C 0.07 1.37 2.21 45.63 0.10 1.47 16 16 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 17 C -0.57 -8.74 5.86 72.70 0.43 -8.31 16 18 S 2.40 36.71 6.05 -56.49 -0.34 36.36 16 19 O -0.97 -21.83 18.16 -127.52 -2.32 -24.14 16 20 O -0.97 -21.84 18.16 -127.52 -2.32 -24.15 16 21 C -0.60 -4.71 7.08 72.20 0.51 -4.20 16 22 C 0.12 1.56 2.82 30.80 0.09 1.65 16 23 H 0.09 0.96 7.99 -2.39 -0.02 0.94 16 24 O -0.55 -7.90 10.76 -148.98 -1.60 -9.50 16 25 C 0.07 1.96 5.10 86.31 0.44 2.40 16 26 C 0.07 2.63 4.88 86.31 0.42 3.05 16 27 C -0.21 -9.36 9.96 30.62 0.30 -9.06 16 28 C -0.19 -7.92 8.22 30.62 0.25 -7.66 16 29 H 0.25 13.36 8.32 -92.71 -0.77 12.59 16 30 H -0.02 -0.74 8.09 -2.39 -0.02 -0.76 16 31 H 0.09 4.50 6.00 -2.39 -0.01 4.49 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.10 2.30 6.69 -2.39 -0.02 2.28 16 35 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.16 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.15 1.96 7.61 -2.39 -0.02 1.94 16 38 H 0.17 0.73 7.92 -2.39 -0.02 0.71 16 39 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.39 2.14 9.09 -74.06 -0.67 1.47 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.11 2.58 5.77 -2.39 -0.01 2.56 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 3.02 5.55 -2.39 -0.01 3.01 16 45 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 46 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 48 H 0.08 2.98 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -72.65 377.53 -6.98 -79.63 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.29 Total: 16.71 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 4.45 Total: -30.17 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -7.17 Total: -89.65 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -6.23 Total: -57.79 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 36.71 SS G_CDS: -0.34 Total: 36.36 kcal Total: -72.65 -6.98 -79.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364375418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.876 kcal (2) G-P(sol) polarization free energy of solvation -72.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds